Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018995

Physical Location & Seq

Genomic Coordinates Reverse (-)

37276783 .. 37277136

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGACTGTCCTCGTCGCTCCTCGGTCATCATAATCGGTGCTGGACTCTCCGGTGAGAGCCTAAACCTCTCTTCAATCATGTCAATTCGCGCCGTTAACCTATTGGCGGCGAAGCTTTTGATCGAGAACGGCGTAGAGAACATGGTGATTCTCAAAGCTTCGGACCGCATCGGCAGTAGGATCTGGAAACATGAATTCGGAGGTGTGTCGGTGGAGCTCTGCACCGGTTGGATTGTCGGAGTCGGTGGAGAACAGCTTAATCTGGTTTGGGGAGTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0036094 GO:0042402 GO:0043167 GO:0043168 GO:0044106 GO:0044237 GO:0046592 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 ko01100 map00330 map00410 map01100

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

93

Amino Acids

9.96

Weight (kDa)

7.83

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	34 - 80	4.3e-06	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018995)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457801 RchiOBHm_Chr4g0413091
rosa_multiflora	Rmu_sc0007827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138640
rosa_samantha	Rh2AG469900 Rh2CG456000 Rh4AG177800 Rh7CG218000 Rh7DG212000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	107, 166
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgeI	ACCGGT	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	4 cut(s)	115, 158, 217, 256
AluI	AGCT	4 cut(s)	115, 158, 217, 256
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	194
AsiGI	ACCGGT	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	65, 157
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BceAI	ACGGC	2 cut(s)	77, 145
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	2 cut(s)	50, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	90
BshTI	ACCGGT	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	51, 225
BslI	CCNNNNNNNGG	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	120, 180
BspACI	CCGC	2 cut(s)	107, 166
BspFNI	CGCG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	120, 180
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	123, 183
BstMBI	GATC	2 cut(s)	120, 180
BstUI	CGCG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	163
CpoI	CGGWCCG	1 cut(s)	163
CspAI	ACCGGT	1 cut(s)	224
CspI	CGGWCCG	1 cut(s)	163
CviAII	CATG	3 cut(s)	79, 142, 191
CviJI	RGCY	5 cut(s)	60, 115, 158, 217, 256
CviKI_1	RGCY	5 cut(s)	60, 115, 158, 217, 256
DpnI	GATC	2 cut(s)	122, 182
DpnII	GATC	2 cut(s)	120, 180
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	3 cut(s)	82, 145, 194
FaiI	YATR	4 cut(s)	32, 80, 143, 192
FatI	CATG	3 cut(s)	78, 141, 190
Fnu4HI	GCNGC	1 cut(s)	108
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	108
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	2 cut(s)	51, 225
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	82, 145, 194
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	113, 156
HinfI	GANTC	3 cut(s)	45, 148, 240
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	51, 225
HphI	GGTGA	2 cut(s)	65, 157
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	163, 200, 239
Hpy188III	TCNNGA	2 cut(s)	124, 184
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	82, 145, 194
HspAI	GCGC	1 cut(s)	90
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	120, 180
LmnI	GCTCC	2 cut(s)	23, 214
LpnPI	CCDG	5 cut(s)	27, 64, 169, 238, 248
LweI	GCATC	1 cut(s)	177
MalI	GATC	2 cut(s)	122, 182
MboI	GATC	2 cut(s)	120, 180
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	84, 194
MlyI	GAGTC	2 cut(s)	39, 249
MmeI	TCCRAC	2 cut(s)	209, 217
MnlI	CCTC	4 cut(s)	21, 31, 77, 194
MseI	TTAA	2 cut(s)	96, 258
MspI	CCGG	2 cut(s)	51, 225
MvnI	CGCG	1 cut(s)	90
NdeII	GATC	2 cut(s)	120, 180
NlaIII	CATG	3 cut(s)	82, 145, 194
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	148
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	39, 248
PpsI	GAGTC	2 cut(s)	39, 248
Psp124BI	GAGCTC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	180
Rsr2I	CGGWCCG	1 cut(s)	163
RsrII	CGGWCCG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	96, 258
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	120, 180
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	39, 249
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	7 cut(s)	69, 102, 117, 160, 205, 219, 258
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	84, 194
SsiI	CCGC	2 cut(s)	107, 166
SstI	GAGCTC	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	84, 194
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	96, 258
Tru9I	TTAA	2 cut(s)	96, 258
TspDTI	ATGAA	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.