Rh2CG456000

Polyamine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018995
Physical Location & Seq
Reverse (-)
61938574 .. 61939237
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG456000.1

Sequence Viewer

Length: 267 bp
ATGTCAATCGGCGCCGTTAACCTATTGGCGGCGAAGCTTTTGATCGAGAACGGCGTAGAGAACGTAGTGATTCTCAAAGCTTCGGACCGCATCGGCAGTAGGATCTGGAAACATGAATTCGAAGGCGTGTCGGTGGAGCTTTGCGCCGGTTGGATTGTCGGAGTCGGTGGAGAGTTTGCTGAGAAAACAAACCTCCAAACTTGCTTCTCCGATTACAGTAATGCTCGCTTCAACATCTACGATCGCAGTTGTTTTAATGTTTCATAG

Protein Analysis

88

Amino Acids

9.67

Weight (kDa)

5.24

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 8 - 54 2e-08 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018995)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0457801 RchiOBHm_Chr4g0413091
rosa_multiflora Rmu_sc0007827.1_g000001
rosa_roxburghii Rroxscaffold_2G00138640
rosa_samantha Rh2AG469900 Rh2CG456000 Rh4AG177800 Rh7CG218000 Rh7DG212000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AciI CCGC 2 cut(s) 29, 88
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 3 cut(s) 37, 80, 139
AluI AGCT 3 cut(s) 37, 80, 139
AlwI GGATC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 2 cut(s) 14, 146
AspS9I GGNCC 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 67
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 13
BmsI GCATC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 244
BshNI GGYRCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 3 cut(s) 42, 102, 241
BspACI CCGC 2 cut(s) 29, 88
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssMI GATC 3 cut(s) 42, 102, 241
BssNI GRCGYC 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 146
BstKTI GATC 3 cut(s) 45, 105, 244
BstMBI GATC 3 cut(s) 42, 102, 241
BstMCI CGRYCG 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 2 cut(s) 14, 146
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 85
CpoI CGGWCCG 1 cut(s) 85
CspI CGGWCCG 1 cut(s) 85
CviAII CATG 1 cut(s) 113
CviJI RGCY 3 cut(s) 37, 80, 139
CviKI_1 RGCY 3 cut(s) 37, 80, 139
DdeI CTNAG 1 cut(s) 180
DinI GGCGCC 1 cut(s) 13
DpnI GATC 3 cut(s) 44, 104, 243
DpnII GATC 3 cut(s) 42, 102, 241
Eco47I GGWCC 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 116
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 114, 265
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 2 cut(s) 13, 145
GluI GCNGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 15
HapII CCGG 1 cut(s) 147
HhaI GCGC 2 cut(s) 14, 146
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 2 cut(s) 12, 144
HinP1I GCGC 2 cut(s) 12, 144
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 2 cut(s) 35, 78
HinfI GANTC 2 cut(s) 70, 162
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 85, 161, 211
Hpy188III TCNNGA 2 cut(s) 46, 106
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 2 cut(s) 12, 144
KasI GGCGCC 1 cut(s) 11
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 42, 102, 241
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 2 cut(s) 91, 160
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 63
MalI GATC 3 cut(s) 44, 104, 243
MboI GATC 3 cut(s) 42, 102, 241
MflI RGATCY 1 cut(s) 102
MluCI AATT 1 cut(s) 116
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 131, 139
MnlI CCTC 1 cut(s) 203
MseI TTAA 2 cut(s) 18, 255
MspI CCGG 1 cut(s) 147
NarI GGCGCC 1 cut(s) 12
NdeII GATC 3 cut(s) 42, 102, 241
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 13
NspV TTCGAA 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 31
Ple19I CGATCG 1 cut(s) 244
PleI GAGTC 1 cut(s) 170
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 102
PvuI CGATCG 1 cut(s) 244
Rsr2I CGGWCCG 1 cut(s) 85
RsrII CGGWCCG 1 cut(s) 85
SaqAI TTAA 2 cut(s) 18, 255
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 3 cut(s) 42, 102, 241
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 171
SetI ASST 6 cut(s) 24, 39, 66, 82, 141, 195
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 120
SgeI CNNG 7 cut(s) 58, 118, 125, 139, 159, 213, 237
SinI GGWCC 1 cut(s) 85
Sse9I AATT 1 cut(s) 116
SsiI CCGC 2 cut(s) 29, 88
SspDI GGCGCC 1 cut(s) 11
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 45, 120
TasI AATT 1 cut(s) 116
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 18, 255
Tru9I TTAA 2 cut(s) 18, 255
TspDTI ATGAA 2 cut(s) 129, 252
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.