Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007827.1

Orthogroup ID

OG0018995

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 448

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 247 bp

atggactgtcctcgtcgctcctcggtcatcataatcggtgctggagtctccagtgatagtcgaaacctctcttcaatcatgtcaatcggcgccgttaagtccctatcggcggcgaagcttttgatcgagaacggcgtagaggacatggtgattctcaaagcttcggacctcatcggcagtaggatctggaaacatgaattccgaggcgtgtcggtggagctctacgccggttggattgtcagagtcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0036094 GO:0042402 GO:0043167 GO:0043168 GO:0044106 GO:0044237 GO:0046592 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 ko01100 map00330 map00410 map01100

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

82

Amino Acids

8.86

Weight (kDa)

9.03

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018995)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457801 RchiOBHm_Chr4g0413091
rosa_multiflora	Rmu_sc0007827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138640
rosa_samantha	Rh2AG469900 Rh2CG456000 Rh4AG177800 Rh7CG218000 Rh7DG212000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	3 cut(s)	118, 161, 220
AluI	AGCT	3 cut(s)	118, 161, 220
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BceAI	ACGGC	2 cut(s)	77, 148
BcoDI	GTCTC	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	91
BpmI	CTGGAG	2 cut(s)	34, 63
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	21, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	21, 202
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	123, 183
BspACI	CCGC	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	21, 202
BssMI	GATC	2 cut(s)	123, 183
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	126, 186
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	123, 183
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	58
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	3 cut(s)	79, 145, 194
CviJI	RGCY	3 cut(s)	118, 161, 220
CviKI_1	RGCY	3 cut(s)	118, 161, 220
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	2 cut(s)	125, 185
DpnII	GATC	2 cut(s)	123, 183
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	3 cut(s)	82, 148, 197
FaiI	YATR	4 cut(s)	32, 80, 146, 195
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	3 cut(s)	78, 144, 193
Fnu4HI	GCNGC	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	34, 63
HaeII	RGCGCY	1 cut(s)	93
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	82, 148, 197
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	2 cut(s)	116, 159
HinfI	GANTC	3 cut(s)	45, 151, 243
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	166, 203, 242
Hpy188III	TCNNGA	2 cut(s)	127, 187
Hpy99I	CGWCG	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	82, 148, 197
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	123, 183
LmnI	GCTCC	2 cut(s)	23, 217
LpnPI	CCDG	4 cut(s)	27, 64, 172, 241
MalI	GATC	2 cut(s)	125, 185
MboI	GATC	2 cut(s)	123, 183
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	197
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	21, 31, 77, 133, 179, 197
MseI	TTAA	1 cut(s)	96
MspI	CCGG	1 cut(s)	228
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	2 cut(s)	123, 183
NlaIII	CATG	3 cut(s)	82, 148, 197
NlaIV	GGNNCC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	53
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	123, 183
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	69, 120, 163, 171, 222
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	110
SspDI	GGCGCC	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	61, 126
TaqII	GACCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	197
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.