Rh7CG218000

Polyamine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018995
Physical Location & Seq
Forward (+)
19956975 .. 19957328
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG218000.1

Sequence Viewer

Length: 201 bp
ATGGACTGTCCTCGTCGCTCCTCCGCGGTGAAGCTTTTGATCGAGAACGGCATAGAGAACGTAGTGATTCTCGAAGCTTCGGACCGCATCTGCAGTAGGATCCGAAAACAAGAATTCGGAGGCGTGTCGGTGGAGCTCAGCGCGGGTTGGATGGTCGGAGTCAGTGGAGAACAGCTTAATCTGGTTTGGGGAGCTCGCTGA

Protein Analysis

66

Amino Acids

7.23

Weight (kDa)

6.17

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 11 - 55 5.2e-06 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018995)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0457801 RchiOBHm_Chr4g0413091
rosa_multiflora Rmu_sc0007827.1_g000001
rosa_roxburghii Rroxscaffold_2G00138640
rosa_samantha Rh2AG469900 Rh2CG456000 Rh4AG177800 Rh7CG218000 Rh7DG212000

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 143
AciI CCGC 4 cut(s) 24, 26, 85, 143
AclWI GGATC 2 cut(s) 94, 107
AcsI RAATTY 1 cut(s) 113
AluBI AGCT 5 cut(s) 34, 77, 136, 175, 194
AluI AGCT 5 cut(s) 34, 77, 136, 175, 194
Alw21I GWGCWC 2 cut(s) 138, 196
AlwI GGATC 2 cut(s) 94, 107
ApoI RAATTY 1 cut(s) 113
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 82
BamHI GGATCC 1 cut(s) 99
BanII GRGCYC 2 cut(s) 138, 196
Bbv12I GWGCWC 2 cut(s) 138, 196
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 91
BlpI GCTNAGC 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 10
Bsh1236I CGCG 2 cut(s) 26, 143
BsiHKAI GWGCWC 2 cut(s) 138, 196
Bsp1286I GDGCHC 2 cut(s) 138, 196
Bsp143I GATC 2 cut(s) 39, 99
Bsp1720I GCTNAGC 1 cut(s) 137
BspACI CCGC 4 cut(s) 24, 26, 85, 143
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 2 cut(s) 26, 143
BspLI GGNNCC 1 cut(s) 101
BspMAI CTGCAG 1 cut(s) 95
BspPI GGATC 2 cut(s) 94, 107
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 39, 99
Bst4CI ACNGT 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 2 cut(s) 26, 143
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 42, 102
BstMBI GATC 2 cut(s) 39, 99
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 2 cut(s) 26, 143
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 82
Cfr42I CCGCGG 1 cut(s) 27
CpoI CGGWCCG 1 cut(s) 82
CspI CGGWCCG 1 cut(s) 82
CviJI RGCY 5 cut(s) 34, 77, 136, 175, 194
CviKI_1 RGCY 5 cut(s) 34, 77, 136, 175, 194
DdeI CTNAG 1 cut(s) 137
DpnI GATC 2 cut(s) 41, 101
DpnII GATC 2 cut(s) 39, 99
Ecl136II GAGCTC 2 cut(s) 136, 194
Eco24I GRGCYC 2 cut(s) 138, 196
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 2 cut(s) 136, 194
EcoICRI GAGCTC 2 cut(s) 136, 194
EcoRI GAATTC 1 cut(s) 113
EcoT38I GRGCYC 2 cut(s) 138, 196
FaiI YATR 1 cut(s) 53
FauI CCCGC 1 cut(s) 136
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 2 cut(s) 138, 196
GlaI GCGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 32, 75
HinfI GANTC 2 cut(s) 67, 159
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 82, 104, 119, 158
Hpy188III TCNNGA 2 cut(s) 43, 71
Hpy99I CGWCG 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 1 cut(s) 141
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 2 cut(s) 39, 99
LmnI GCTCC 3 cut(s) 23, 133, 191
LpnPI CCDG 1 cut(s) 167
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 60
MalI GATC 2 cut(s) 41, 101
MboI GATC 2 cut(s) 39, 99
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 138, 196
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 2 cut(s) 128, 136
MnlI CCTC 3 cut(s) 21, 31, 113
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 26
MvnI CGCG 2 cut(s) 26, 143
NdeII GATC 2 cut(s) 39, 99
NlaIV GGNNCC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 67
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 2 cut(s) 138, 196
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 82
PstI CTGCAG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 99
Rsr2I CGGWCCG 1 cut(s) 82
RsrII CGGWCCG 1 cut(s) 82
SacI GAGCTC 2 cut(s) 138, 196
SacII CCGCGG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 2 cut(s) 39, 99
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 168
SduI GDGCHC 2 cut(s) 138, 196
SetI ASST 6 cut(s) 36, 63, 79, 138, 177, 196
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 91
Sfr303I CCGCGG 1 cut(s) 27
SgeI CNNG 9 cut(s) 24, 37, 55, 83, 122, 136, 154, 156, 194
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 1 cut(s) 82
Sse9I AATT 1 cut(s) 113
SsiI CCGC 4 cut(s) 24, 26, 85, 143
SstI GAGCTC 2 cut(s) 138, 196
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 42, 72
TasI AATT 1 cut(s) 113
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 169
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.