Rh4AG177800

Polyamine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018995
Physical Location & Seq
Reverse (-)
44621867 .. 44622220
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG177800.1

Sequence Viewer

Length: 282 bp
ATGGACTGTCCTCGTCGCTCCTCGGTCATCATAATCGGTGCTGGACTCTCCGGTGAGAGCCTAAACCTCTCTTCAATCATGTCAATTCGCGCCGTTAACCTATTGGCGGCGAAGCTTTTGATCGAGAACAGCGTAGAGAACATGGTGATTCTCAAAGCTTCGGACCGCATCGGCAGTAGGATCTGGAAACATGAATTCGGAGGTGTGTCGGTGGAGCTCTGCACCGGTTGGATTGTCGGAGTCGGTGGAGAACAGCTTAATCTGGTTTGGGGAGTTCGCTGA

Protein Analysis

93

Amino Acids

9.99

Weight (kDa)

7.83

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018995)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0457801 RchiOBHm_Chr4g0413091
rosa_multiflora Rmu_sc0007827.1_g000001
rosa_roxburghii Rroxscaffold_2G00138640
rosa_samantha Rh2AG469900 Rh2CG456000 Rh4AG177800 Rh7CG218000 Rh7DG212000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 2 cut(s) 107, 166
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 106
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 1 cut(s) 75
AluBI AGCT 4 cut(s) 115, 158, 217, 256
AluI AGCT 4 cut(s) 115, 158, 217, 256
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 224
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 65, 157
AvaII GGWCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 2 cut(s) 50, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 90
BshTI ACCGGT 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 51, 225
BslI CCNNNNNNNGG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 120, 180
BspACI CCGC 2 cut(s) 107, 166
BspFNI CGCG 1 cut(s) 90
BspPI GGATC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 120, 180
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 76
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 123, 183
BstMBI GATC 2 cut(s) 120, 180
BstUI CGCG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 163
CpoI CGGWCCG 1 cut(s) 163
CspAI ACCGGT 1 cut(s) 224
CspI CGGWCCG 1 cut(s) 163
CviAII CATG 3 cut(s) 79, 142, 191
CviJI RGCY 5 cut(s) 60, 115, 158, 217, 256
CviKI_1 RGCY 5 cut(s) 60, 115, 158, 217, 256
DpnI GATC 2 cut(s) 122, 182
DpnII GATC 2 cut(s) 120, 180
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 3 cut(s) 82, 145, 194
FaiI YATR 4 cut(s) 32, 80, 143, 192
FatI CATG 3 cut(s) 78, 141, 190
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 108
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 108
HapII CCGG 2 cut(s) 51, 225
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 82, 145, 194
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 2 cut(s) 113, 156
HinfI GANTC 3 cut(s) 45, 148, 240
HpaI GTTAAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 51, 225
HphI GGTGA 2 cut(s) 65, 157
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 163, 200, 239
Hpy188III TCNNGA 2 cut(s) 124, 184
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 222
Hsp92II CATG 3 cut(s) 82, 145, 194
HspAI GCGC 1 cut(s) 90
KspAI GTTAAC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 120, 180
LmnI GCTCC 2 cut(s) 23, 214
LpnPI CCDG 5 cut(s) 27, 64, 169, 238, 248
LweI GCATC 1 cut(s) 177
MalI GATC 2 cut(s) 122, 182
MboI GATC 2 cut(s) 120, 180
MboII GAAGA 1 cut(s) 63
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 84, 194
MlyI GAGTC 2 cut(s) 39, 249
MmeI TCCRAC 2 cut(s) 209, 217
MnlI CCTC 4 cut(s) 21, 31, 77, 194
MseI TTAA 2 cut(s) 96, 258
MspI CCGG 2 cut(s) 51, 225
MvnI CGCG 1 cut(s) 90
NdeII GATC 2 cut(s) 120, 180
NlaIII CATG 3 cut(s) 82, 145, 194
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 39, 248
PpsI GAGTC 2 cut(s) 39, 248
Psp124BI GAGCTC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 180
Rsr2I CGGWCCG 1 cut(s) 163
RsrII CGGWCCG 1 cut(s) 163
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 96, 258
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 120, 180
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 2 cut(s) 39, 249
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 69, 102, 117, 160, 205, 219, 258
SfaNI GCATC 1 cut(s) 177
SinI GGWCC 1 cut(s) 163
Sse9I AATT 2 cut(s) 84, 194
SsiI CCGC 2 cut(s) 107, 166
SstI GAGCTC 1 cut(s) 219
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 13
TasI AATT 2 cut(s) 84, 194
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 96, 258
Tru9I TTAA 2 cut(s) 96, 258
TspDTI ATGAA 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.