Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018995

Physical Location & Seq

Genomic Coordinates Reverse (-)

76803962 .. 76809374

Gene Structure 5413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGACTTCGTCGTCAACCTCATGATCGATGGAATGTTAGGTGGTGTTCAAGAATGCCTATCGGCGGCTAAGCTTCTCATCGAGAACGGCGTAGAGAACGTGGTGATTCTTGAAGCTTCGGATCGCATCTGCGGTAGGATCCATAAACATGAATTCGGAGGCGTGTCGGTGGAGCTCTGCGCTGGTTGGATCGTCGAGTCGGTGGAGAACAACTTAATCTGGTTTGGGGAGTTTGCTGAGAAAACAAACCTCCGGACTTGCTTCACCGATTACGTAATGCTCGCTTCAACATCTAAGATCGCAGGTCCAGCCATATCCCGAAGTATTTTAACATCATGGCACGATGATATCCAGAATGGCATGGAGGTTGTACCACCAGCTGCTCCACCGAGAGCGGCTGCCGGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0036094 GO:0042402 GO:0043167 GO:0043168 GO:0044106 GO:0044237 GO:0046592 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 ko01100 map00330 map00410 map01100

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

136

Amino Acids

14.71

Weight (kDa)

4.7

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	20 - 70	1.1e-09	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018995)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457801 RchiOBHm_Chr4g0413091
rosa_multiflora	Rmu_sc0007827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138640
rosa_samantha	Rh2AG469900 Rh2CG456000 Rh4AG177800 Rh7CG218000 Rh7DG212000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	3 cut(s)	65, 132, 395
AclWI	GGATC	4 cut(s)	129, 133, 146, 197
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	50, 113, 288
AluBI	AGCT	4 cut(s)	73, 116, 175, 380
AluI	AGCT	4 cut(s)	73, 116, 175, 380
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	4 cut(s)	129, 133, 146, 197
Aor13HI	TCCGGA	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	380, 398
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	115, 256
AvaII	GGWCC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	367, 385
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	4 cut(s)	66, 381, 396, 399
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	4 cut(s)	67, 382, 397, 400
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseAI	TCCGGA	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	27
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	367, 385
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	253, 402
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	24, 121, 138, 189, 297
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	65, 132, 395
BspCNI	CTCAG	1 cut(s)	229
BspDI	ATCGAT	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	4 cut(s)	129, 133, 146, 197
BsrBI	CCGCTC	1 cut(s)	395
BssMI	GATC	5 cut(s)	24, 121, 138, 189, 297
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	69, 237, 294
BstF5I	GGATG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	5 cut(s)	27, 124, 141, 192, 300
BstMBI	GATC	5 cut(s)	24, 121, 138, 189, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	401
BstSNI	TACGTA	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	367, 385
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	4 cut(s)	22, 149, 336, 361
CviJI	RGCY	7 cut(s)	68, 73, 116, 175, 311, 380, 398
CviKI_1	RGCY	7 cut(s)	68, 73, 116, 175, 311, 380, 398
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	69, 237, 294
DpnI	GATC	5 cut(s)	26, 123, 140, 191, 299
DpnII	GATC	5 cut(s)	24, 121, 138, 189, 297
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	4 cut(s)	25, 152, 339, 364
FaiI	YATR	6 cut(s)	23, 144, 150, 314, 337, 362
FatI	CATG	4 cut(s)	21, 148, 335, 360
Fnu4HI	GCNGC	4 cut(s)	66, 381, 396, 399
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	66, 381, 396, 399
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	4 cut(s)	66, 381, 396, 399
HapII	CCGG	2 cut(s)	253, 402
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	4 cut(s)	25, 152, 339, 364
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	71, 114
HinfI	GANTC	2 cut(s)	106, 197
HpaII	CCGG	2 cut(s)	253, 402
HphI	GGTGA	2 cut(s)	115, 256
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	121, 158
Hpy188III	TCNNGA	7 cut(s)	22, 50, 82, 110, 253, 318, 352
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	14, 197
HpyCH4IV	ACGT	2 cut(s)	99, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	69, 237, 294
HpySE526I	ACGT	2 cut(s)	99, 273
Hsp92II	CATG	4 cut(s)	25, 152, 339, 364
HspAI	GCGC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	252
Kzo9I	GATC	5 cut(s)	24, 121, 138, 189, 297
LmnI	GCTCC	2 cut(s)	172, 388
LpnPI	CCDG	7 cut(s)	168, 205, 266, 288, 321, 365, 390
Lsp1109I	GCAGC	2 cut(s)	367, 385
LweI	GCATC	1 cut(s)	135
MaeII	ACGT	2 cut(s)	99, 273
MalI	GATC	5 cut(s)	26, 123, 140, 191, 299
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	5 cut(s)	24, 121, 138, 189, 297
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	29, 152, 260, 358
MroI	TCCGGA	1 cut(s)	252
MseI	TTAA	2 cut(s)	215, 329
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	253, 402
MspR9I	CCNGG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	5 cut(s)	24, 121, 138, 189, 297
NlaIII	CATG	4 cut(s)	25, 152, 339, 364
NlaIV	GGNNCC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	106
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	67, 382, 397, 400
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	215, 329
SatI	GCNGC	4 cut(s)	66, 381, 396, 399
Sau3AI	GATC	5 cut(s)	24, 121, 138, 189, 297
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	1 cut(s)	135
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	147
SnaBI	TACGTA	1 cut(s)	274
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	3 cut(s)	65, 132, 395
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	401
TaiI	ACGT	2 cut(s)	102, 276
TaqI	TCGA	3 cut(s)	27, 81, 195
TasI	AATT	1 cut(s)	152
TauI	GCSGC	2 cut(s)	68, 398
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	215, 329
Tru9I	TTAA	2 cut(s)	215, 329
TseI	GCWGC	2 cut(s)	380, 398
TspDTI	ATGAA	1 cut(s)	165
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.