Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018995

Physical Location & Seq

Genomic Coordinates Reverse (-)

68964836 .. 68965447

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG469900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCAATCGGCGCCGTTAACCTATTGGCGGCGAAGCTTTTGATCGAGAACGGCGTAGAGAACGTAGTGATTCTCAAAGCTTCGGACCGCATCGGCAGTAGGATCTGGAAACATGAATTCGAAGGCGTGTCGGTGGAGCTTTGCGCCGGTTGGATTGTCGGAGTCGGTGGAGAGTTTGCTGAGAAAACAAACCTCCAAACTTGCTTCTCCGATTACAGTAATGCTCGCTTCAACATCTACGATCGCAGGTCCAGCCATATCCTGAAGCATTTTAATTTGAGGCTTGAATTATGTATTGTTACTGTTTTTGGAAAAGTGAATGATGCTCATGGATACAACAAAATGTTGATGGATTATGATGTGCAATACATACAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0036094 GO:0042402 GO:0043167 GO:0043168 GO:0044106 GO:0044237 GO:0046592 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 ko01100 map00330 map00410 map01100

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

6.4

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	8 - 54	3.4e-08	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018995)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457801 RchiOBHm_Chr4g0413091
rosa_multiflora	Rmu_sc0007827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138640
rosa_samantha	Rh2AG469900 Rh2CG456000 Rh4AG177800 Rh7CG218000 Rh7DG212000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	11
AciI	CCGC	2 cut(s)	29, 88
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	232, 287
AluBI	AGCT	3 cut(s)	37, 80, 139
AluI	AGCT	3 cut(s)	37, 80, 139
AlwI	GGATC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	14, 146
AspS9I	GGNCC	2 cut(s)	85, 249
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	85, 249
BanI	GGYRCC	1 cut(s)	11
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	85, 249
BmgT120I	GGNCC	2 cut(s)	85, 249
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	2 cut(s)	99, 313
Bpu14I	TTCGAA	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	42, 102, 241
BspACI	CCGC	2 cut(s)	29, 88
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	3 cut(s)	42, 102, 241
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	218, 304
BstACI	GRCGYC	1 cut(s)	12
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 146
BstKTI	GATC	3 cut(s)	45, 105, 244
BstMBI	GATC	3 cut(s)	42, 102, 241
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	326
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	2 cut(s)	14, 146
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	85, 249
CpoI	CGGWCCG	1 cut(s)	85
CspI	CGGWCCG	1 cut(s)	85
CviAII	CATG	2 cut(s)	113, 329
CviJI	RGCY	5 cut(s)	37, 80, 139, 255, 283
CviKI_1	RGCY	5 cut(s)	37, 80, 139, 255, 283
DdeI	CTNAG	1 cut(s)	180
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	3 cut(s)	44, 104, 243
DpnII	GATC	3 cut(s)	42, 102, 241
Eco47I	GGWCC	2 cut(s)	85, 249
Eco57I	CTGAAG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	116
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
FaeI	CATG	2 cut(s)	116, 332
FaiI	YATR	6 cut(s)	114, 258, 292, 330, 357, 371
FatI	CATG	2 cut(s)	112, 328
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	2 cut(s)	13, 145
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	15
HapII	CCGG	1 cut(s)	147
HhaI	GCGC	2 cut(s)	14, 146
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	116, 332
Hin6I	GCGC	2 cut(s)	12, 144
HinP1I	GCGC	2 cut(s)	12, 144
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	2 cut(s)	35, 78
HinfI	GANTC	2 cut(s)	70, 162
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	85, 161, 211
Hpy188III	TCNNGA	3 cut(s)	46, 106, 262
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	218, 304
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	116, 332
HspAI	GCGC	2 cut(s)	12, 144
KasI	GGCGCC	1 cut(s)	11
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	42, 102, 241
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	91, 160, 232, 265, 275
LweI	GCATC	2 cut(s)	99, 313
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	44, 104, 243
MboI	GATC	3 cut(s)	42, 102, 241
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	3 cut(s)	116, 274, 287
Mly113I	GGCGCC	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	131, 139
MnlI	CCTC	2 cut(s)	203, 273
MseI	TTAA	2 cut(s)	18, 273
MspI	CCGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	252
NarI	GGCGCC	1 cut(s)	12
NdeII	GATC	3 cut(s)	42, 102, 241
NlaIII	CATG	2 cut(s)	116, 332
NlaIV	GGNNCC	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	31
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	170
PluTI	GGCGCC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	85, 249
PsuI	RGATCY	1 cut(s)	102
PvuI	CGATCG	1 cut(s)	244
Rsr2I	CGGWCCG	1 cut(s)	85
RsrII	CGGWCCG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	18, 273
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	42, 102, 241
Sau96I	GGNCC	2 cut(s)	85, 249
SchI	GAGTC	1 cut(s)	171
SetI	ASST	7 cut(s)	24, 39, 66, 82, 141, 195, 251
SfaNI	GCATC	2 cut(s)	99, 313
SfoI	GGCGCC	1 cut(s)	13
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	2 cut(s)	85, 249
Sse9I	AATT	3 cut(s)	116, 274, 287
SsiI	CCGC	2 cut(s)	29, 88
SspDI	GGCGCC	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	218, 304
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	45, 120
TasI	AATT	3 cut(s)	116, 274, 287
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	18, 273
Tru9I	TTAA	2 cut(s)	18, 273
TspDTI	ATGAA	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	85, 249
XapI	RAATTY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.