RchiOBHm_Chr4g0417791

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016981
Physical Location & Seq
Forward (+)
43075936 .. 43080012
4077 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38785

Sequence Viewer

Length: 3819 bp
ATGTCGTTTTACGACTACGATCCCGGGGATCGTAACAACTGGTATCAGAGCCCGCAACTGGGCCTGTTTCCGGCGGGTTACGGCAGTGGGATATCCGACAACTATTACTGTGCTTGGGCAAATCATCTTCACGGTAACCCCTATAGCCAAGCTCAGATGGTGACCAACTTCACACAACCCAACCCTTACCCTCCTCCGCCACACAACCCTTCTGCAACCATCATCAATGGCCACCTACTCCCTCACCAATTTCCATGTGTTCCTCAGACTCACTCACATTTCACCCCACCTCCACACTTGCAACCGATTCATCCTATTGCTCCACCTTCACCTATCATTGCATTATCTGAAGGTCAGGTGTTCGATCCACCTTCACCGCAGCCACTCACTTTTGTGCCCCAACCTCAATTTCCAGATCCCAAACCTCCATCGTGTTTTCGTTTAGTGGGCAACTGTGAGCCCCTAGCTCTATTCACGGGTCGGATCCAAACCACACCATCTTCTTCTTCTTTATCATTCGACCCACACACCTACCTTGTAGAGGCTACAAATCTATCTTCTCCGCCACTAATTTTCGGTGTTCCGGAGCAAATAAAGGTTCTCCATTCCAAGCTTGCCGTCTCCGCCCTCATGGAAGAGCTCCAGAAGCCTCACCAGTCCCTCTGCGTCGCCGTCGCCGAGGAGGGCAACCTCGCCACTCAGGTCGACTTCGCTTCACCGAGCCGGAATCGCGATGAGAAACTCAAACGCGACGACGTCGTCTCCAAGGGCGTCGACCTTGCAGTCTTGGAAGCGTTAAAGAAGGGAGCCACACCGGAAACACTCGACCCTCGAACCGTAAAAAGGCTGGTCCTGGCCGTGGAGCCCGCTCAATCCTTCACTTCCCAGCCGCAGCAACCGTTAAATCAACACCACATGGACAAATTCGTGACTCCTCCGCCACTGGCACAGTTCACTGCCCGCTTGCCTCCTCTGCTGGACGACGCCGTTTCAGCTCAGCCGAACGACAACCTTGCATCCTTTTGCTGGGTAAGGGATACTAGCACTACAGTCTCTAATCCGTTCAATTTTCTGAATGATGATTGTAATGGTATGGGTTTTGTGTTTGATGCTGATGGTATTGATGAGCAATTGGATAATGGGAAGAGTGTCGAGAAGAGGGCTGAGGTGAATAGTGGAGATGGTAGAGAGTTCAGTGAGCCTGAGCGTGTCATTGGTAAGCAGGACGAGGGTGAAGATGAGGAACAGCTTAGCAATGGAATGTCAGAATTTCATGCCCTCCAACTGTTTGATAAAATGCCGAAGTTAGATGGGTTTGATGATATGGAAAATGATGTCAAGCAACTTATTTTTGAAGCTGCACTTGTTTCTGCAAGGATGTATAATGAATGGCACGAGCCACATAAAGAATTTGCAGTTGATTTGGAGCACAACCAATATCGACCCTTCCAAGGATTGACTTGTTTGATGCAAATTTCTACAAGTACTGAAGATTTTATAGTAGATACTTTGAAGCTTAGAATTCATATTGGTCCATATCTTAGGGAAGTTTTCAAGGACCCTCCTAAGAGAAAAGTGATGCATGGAGGTCGAGATATTGTGTGGTTTCAACGGGCTTTTGGCATTTATAGCTGCAATTTGTTTTACACGGGCCAGGCCTCAAGGGTATTGAAATTGGAGAGAAATAGTTTGGACTATCTTTTGCATCACTTTTGTGATGTTTCTGCCAACAAAGAATACCAGAATACTAATAGATCACCTGTTGGGAACTCAATTCTCTACTCTGAGGTTCATACTTCAACGGGTTTTGGCAACAGATTCTTGAATGATAATTTGGGTGAAGAAAATGTTTTTGTTGGAGACAGCTTTCGGAAAATGCAAATAAATTCTGAAAGGGTGCTGGAGTTAATATTAGGGAAGTGGAAATCAAGAGTTACGGCCAAAACACAATCTGAAGCAAAGTTAGTGCAATGGTTTATTCTTTGCTTGCAGCTTTGTCATTGTGAGACGAAAGAGATTATACTCTTTTGCAAGGAAGCATTTGACGGAATTGGTGAAATGACTCAAACATCTTTGTCTCAGGTATTCACTACTTTGAATTTAAATGATCAAGATGTTAGAAGAGCTTTTGAGAGTTTCTTGTCTGCTATGATTAAGCTCTATAATCATAGTTTCTTGAACTCTAAAGTTGAAGTAGAAATTTGGCCTCCTGATGGGGAATGGTTGGATTTGGATGGAGAAATGTATTGTCGAGTTGTTAGAGGATTTCTTGATAATAAAAATGTGAAAGAGTTGGCAGTTTTGATTATTAAAGCTCAGAAGCTAGAGTCTTCTACAATTGTGGTTGATAGATCATGCTGTTGCAGTCTTATTATTGTTTGTGCACATGAACTGCAAACTGCTAAAGGTACACGTGAAAGCCACTGCTTGGAATTGGAGGTAAATGCAAAAGAAGCTAAACTTGAATTACAAAGGAAGTTGAACAAACTTGAGTCCTTGCTAACAGGTTTAGAGAAGAATGAGAACGAACTAGAGGCATCTTTAGAATCTGTATCAGGGAAATGGAAACATAAACAAGGATCTTTCCAAAGTTTTGTAGACTATCAAGCTGGAGCTTTGACGGAACTAAATGCTGCTTTGCAATCTACAAGGCTTGAAATCTTGAGTGCAAAACAAAGTCACTCTGAAGAATTTAATTGCATGGGATCGAAGCCTGGAGGATTAGCAGATGCAGCAGAAAAGTACCGTGTAGTTCTTGCTGAGAAGGTTTTTGTTAGGATACCTGAAGTCAGTGTTGTTTCTTGGAATGTCATGATAACTGGGTATATCCTGATATTTCAGAGTCAGAAAGCTATAGAATATCTACCAAGAATACAAACTCGGGGCTTTGGACCTGATGAGGTCACATATATTAATCTGCCTGCAGCATGTGTCAAGGCTGGTGATATAAAAAGAAGCCACCAAATGTCCGATAACATCTCACGCCCAAATGTGATGTCAGTGAATGCCATTATTTCTGTCTATTTCCAGAATGAAGACCACATGGAGGTAATCAAGCTTCTCAGGGAAATGTTGTTTCGAGGTCTGCATCTTGATCAAAGTACATTGGCAATTGCCCTCAGCTCTAGTGCATTAATGGGGATATTTGCATGGAGGACCTTTCCACTTTCCACCTTTATGATTCTTGGTGCATTGCTGATATCAGTCTCACATGCAAAGATGCTTGAGAAGTGTTTGGGGGTTGATTATTTTTTGCAAGCTGCAACTCTGCAAGAATTGGTACAAGAGTTGGTGGGAGATGGTATTCCACTTGTCCTTCCACCTAATATACAAGACAATGAAGAAGATGGTGGACTTACTGTAAACAATGAAGATGTGAGAGTTGATGTTGTTGCTTCAAAATTAGTTTCCAGTGATCAGATTTCTCTATATAAGCTCTTGGTTTACATCATGCTTCTTGGTCTTGGGTGTCTTATGAAGGCTTTGGCTTTGCTGCTTGGTGAATATTTTGAAATGTGGCAGGCTGCACCCATTGCTTCCTTGAAAGTTGTTAAATTTGTGAGGAGCACCATAACAAAAGTGATGGCACAATTGGTGATTAATGTCATGAACCTATTGTTTCGAGTTGTGCAGAATATCATTGCTGTGATTACATATTCAGCTCCACTTGCTGCCGTTCAGACCTTACATGACAACCATACTTCTATGGAGAAATTTTGGGTGGACGTTGCTCATGCAGAAATTGGTAGCTCTCTCTATTTTTCTACCATTACTACAGGCATGAGGGCATGCCTTATTTTAGGGGGGCAGAATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

1272

Amino Acids

142.28

Weight (kDa)

5.45

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_A_exo1 PF01612 465 - 595 5.5e-25 3'-5' exonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 758, 782
AatII GACGTC 1 cut(s) 759
AccB7I CCANNNNNTGG 1 cut(s) 2428
AccBSI CCGCTC 1 cut(s) 869
AccI GTMKAC 3 cut(s) 705, 774, 2598
AccII CGCG 2 cut(s) 732, 750
AccIII TCCGGA 1 cut(s) 583
AclWI GGATC 8 cut(s) 14, 36, 359, 410, 478, 491, 2587, 2713
AcoI YGGCCR 3 cut(s) 229, 855, 1938
AcuI CTGAAG 5 cut(s) 369, 1509, 1974, 2706, 2805
AcvI CACGTG 1 cut(s) 2414
AcyI GRCGYC 3 cut(s) 756, 771, 984
AfaI GTAC 5 cut(s) 1486, 2410, 2744, 3103, 3282
AflIII ACRYGT 1 cut(s) 2411
AjnI CCWGG 3 cut(s) 852, 1653, 2713
AjuI GAANNNNNNNTTGG 4 cut(s) 393, 425, 1817, 1849
AleI CACNNNNGTG 2 cut(s) 392, 1713
Alw21I GWGCWC 4 cut(s) 642, 1431, 2386, 3569
Alw26I GTCTC 7 cut(s) 625, 766, 1057, 1854, 2000, 2082, 3211
Alw44I GTGCAC 1 cut(s) 2382
AlwI GGATC 8 cut(s) 14, 36, 359, 410, 478, 491, 2587, 2713
Ama87I CYCGRG 2 cut(s) 23, 2880
Aor13HI TCCGGA 1 cut(s) 583
AoxI GGCC 7 cut(s) 61, 229, 855, 1651, 1656, 1938, 2204
ApaLI GTGCAC 1 cut(s) 2382
ArsI GACNNNNNNTTYG 2 cut(s) 2981, 3013
AseI ATTAAT 3 cut(s) 2913, 3134, 3600
AspS9I GGNCC 7 cut(s) 61, 850, 1532, 1558, 1651, 2891, 3156
AsuC2I CCSGG 2 cut(s) 24, 25
AvaI CYCGRG 2 cut(s) 23, 2880
AvaII GGWCC 5 cut(s) 850, 1532, 1558, 2891, 3156
BaeGI GKGCMC 2 cut(s) 399, 2386
BaeI ACNNNNGTAYC 2 cut(s) 3272, 3305
BalI TGGCCA 1 cut(s) 231
BamHI GGATCC 1 cut(s) 483
BanII GRGCYC 4 cut(s) 53, 462, 642, 867
BarI GAAGNNNNNNTAC 2 cut(s) 3042, 3074
BauI CACGAG 1 cut(s) 1394
BbrPI CACGTG 1 cut(s) 2414
BbsI GAAGAC 2 cut(s) 2322, 3042
Bbv12I GWGCWC 4 cut(s) 642, 1431, 2386, 3569
BbvCI CCTCAGC 2 cut(s) 1164, 3119
BceAI ACGGC 7 cut(s) 97, 602, 656, 842, 971, 1953, 3659
BcgI CGANNNNNNTGC 4 cut(s) 995, 1029, 1571, 1605
BciT130I CCWGG 3 cut(s) 854, 1655, 2715
BciVI GTATCC 2 cut(s) 1030, 2772
BclI TGATCA 3 cut(s) 2107, 3094, 3415
BcnI CCSGG 2 cut(s) 24, 25
BcoDI GTCTC 7 cut(s) 625, 766, 1057, 1854, 2000, 2082, 3211
BfaI CTAG 5 cut(s) 464, 1041, 2324, 2531, 3126
BfmI CTRYAG 5 cut(s) 142, 1047, 2853, 2922, 3774
BfuI GTATCC 2 cut(s) 1030, 2772
BlpI GCTNAGC 2 cut(s) 996, 1250
BmcAI AGTACT 1 cut(s) 1486
Bme1390I CCNGG 5 cut(s) 24, 25, 854, 1655, 2715
Bme18I GGWCC 5 cut(s) 850, 1532, 1558, 2891, 3156
BmeT110I CYCGRG 2 cut(s) 23, 2880
BmgT120I GGNCC 7 cut(s) 61, 850, 1532, 1558, 1651, 2891, 3156
BmiI GGNNCC 4 cut(s) 485, 808, 864, 1560
BmrFI CCNGG 5 cut(s) 24, 25, 854, 1655, 2715
BmrI ACTGGG 2 cut(s) 68, 2829
BmsI GCATC 9 cut(s) 1025, 1099, 1458, 1569, 1714, 2546, 2719, 3097, 3210
BmuI ACTGGG 2 cut(s) 68, 2829
BpiI GAAGAC 2 cut(s) 2322, 3042
BpmI CTGGAG 4 cut(s) 626, 1922, 2631, 2736
Bpu10I CCTNAGC 3 cut(s) 1164, 1203, 3119
Bpu1102I GCTNAGC 2 cut(s) 996, 1250
BpuEI CTTGAG 4 cut(s) 1645, 2510, 2683, 3245
BpuMI CCSGG 2 cut(s) 24, 25
BsaAI YACGTR 1 cut(s) 2414
BsaHI GRCGYC 3 cut(s) 756, 771, 984
BsaJI CCNNGG 6 cut(s) 23, 24, 678, 765, 858, 1450
BsaWI WCCGGW 2 cut(s) 583, 814
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 746, 776
Bse1I ACTGG 6 cut(s) 44, 63, 655, 948, 2824, 3411
Bse3DI GCAATG 6 cut(s) 336, 1261, 1976, 3191, 3531, 3639
BseAI TCCGGA 1 cut(s) 583
BseBI CCWGG 3 cut(s) 854, 1655, 2715
BseDI CCNNGG 6 cut(s) 23, 24, 678, 765, 858, 1450
BseGI GGATG 4 cut(s) 310, 1016, 1383, 2239
BseMI GCAATG 6 cut(s) 336, 1261, 1976, 3191, 3531, 3639
BseNI ACTGG 6 cut(s) 44, 63, 655, 948, 2824, 3411
BseRI GAGGAG 5 cut(s) 183, 695, 924, 960, 3577
BseSI GKGCMC 2 cut(s) 399, 2386
BseYI CCCAGC 2 cut(s) 885, 1026
BsgI GTGCAG 3 cut(s) 1344, 3510, 3650
Bsh1236I CGCG 2 cut(s) 732, 750
BshFI GGCC 7 cut(s) 63, 231, 857, 1653, 1658, 1940, 2206
BsiHKAI GWGCWC 4 cut(s) 642, 1431, 2386, 3569
BsiHKCI CYCGRG 2 cut(s) 23, 2880
BsiSI CCGG 5 cut(s) 24, 71, 584, 724, 815
BslFI GGGAC 1 cut(s) 643
BsmAI GTCTC 7 cut(s) 625, 766, 1057, 1854, 2000, 2082, 3211
BsmBI CGTCTC 3 cut(s) 625, 766, 2000
BsmFI GGGAC 1 cut(s) 643
BsmI GAATGC 1 cut(s) 3010
BsnI GGCC 7 cut(s) 63, 231, 857, 1653, 1658, 1940, 2206
BsoBI CYCGRG 2 cut(s) 23, 2880
Bsp1286I GDGCHC 8 cut(s) 53, 399, 462, 642, 867, 1431, 2386, 3569
Bsp13I TCCGGA 1 cut(s) 583
Bsp1720I GCTNAGC 2 cut(s) 996, 1250
Bsp68I TCGCGA 1 cut(s) 732
BspANI GGCC 7 cut(s) 63, 231, 857, 1653, 1658, 1940, 2206
BspEI TCCGGA 1 cut(s) 583
BspFNI CGCG 2 cut(s) 732, 750
BspHI TCATGA 2 cut(s) 2811, 3606
BspLI GGNNCC 4 cut(s) 485, 808, 864, 1560
BspMAI CTGCAG 1 cut(s) 2926
BspPI GGATC 8 cut(s) 14, 36, 359, 410, 478, 491, 2587, 2713
BspQI GCTCTTC 2 cut(s) 630, 2116
BsrBI CCGCTC 1 cut(s) 869
BsrDI GCAATG 6 cut(s) 336, 1261, 1976, 3191, 3531, 3639
BsrI ACTGG 6 cut(s) 44, 63, 655, 948, 2824, 3411
BssECI CCNNGG 6 cut(s) 23, 24, 678, 765, 858, 1450
BssNI GRCGYC 3 cut(s) 756, 771, 984
BssSI CACGAG 1 cut(s) 1394
BssT1I CCWWGG 2 cut(s) 765, 1450
Bst2BI CACGAG 1 cut(s) 1394
Bst2UI CCWGG 3 cut(s) 854, 1655, 2715
Bst6I CTCTTC 4 cut(s) 630, 1139, 1151, 2116
BstACI GRCGYC 3 cut(s) 756, 771, 984
BstAPI GCANNNNNTGC 1 cut(s) 3533
BstBAI YACGTR 1 cut(s) 2414
BstDSI CCRYGG 1 cut(s) 858
BstEII GGTNACC 2 cut(s) 134, 160
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 4 cut(s) 310, 1016, 1383, 2239
BstFNI CGCG 2 cut(s) 732, 750
BstMAI GTCTC 7 cut(s) 625, 766, 1057, 1854, 2000, 2082, 3211
BstNI CCWGG 3 cut(s) 854, 1655, 2715
BstNSI RCATGY 3 cut(s) 2931, 3215, 3792
BstPI GGTNACC 2 cut(s) 134, 160
BstSCI CCNGG 5 cut(s) 22, 23, 852, 1653, 2713
BstSFI CTRYAG 5 cut(s) 142, 1047, 2853, 2922, 3774
BstSLI GKGCMC 2 cut(s) 399, 2386
BstUI CGCG 2 cut(s) 732, 750
BstV2I GAAGAC 2 cut(s) 2322, 3042
BstX2I RGATCY 3 cut(s) 415, 483, 2579
BstYI RGATCY 3 cut(s) 415, 483, 2579
BsuI GTATCC 2 cut(s) 1030, 2772
BsuRI GGCC 7 cut(s) 63, 231, 857, 1653, 1658, 1940, 2206
BtgI CCRYGG 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 4 cut(s) 310, 1016, 1383, 2239
BtsI GCAGTG 3 cut(s) 91, 954, 2422
BtsIMutI CAGTG 8 cut(s) 91, 941, 954, 1201, 2422, 2797, 3006, 3418
BtuMI TCGCGA 1 cut(s) 732
CciI TCATGA 2 cut(s) 2811, 3606
Cfr13I GGNCC 7 cut(s) 61, 850, 1532, 1558, 1651, 2891, 3156
Cfr9I CCCGGG 1 cut(s) 23
CseI GACGC 3 cut(s) 655, 760, 992
Csp6I GTAC 5 cut(s) 1485, 2409, 2743, 3102, 3281
CviQI GTAC 5 cut(s) 1485, 2409, 2743, 3102, 3281
DraI TTTAAA 1 cut(s) 2103
DrdI GACNNNNNNGTC 2 cut(s) 758, 782
DseDI GACNNNNNNGTC 2 cut(s) 758, 782
EaeI YGGCCR 3 cut(s) 229, 855, 1938
Eam1104I CTCTTC 4 cut(s) 630, 1139, 1151, 2116
EarI CTCTTC 4 cut(s) 630, 1139, 1151, 2116
EciI GGCGGA 4 cut(s) 186, 552, 613, 927
Ecl136II GAGCTC 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 765, 1450
Eco147I AGGCCT 1 cut(s) 1658
Eco24I GRGCYC 4 cut(s) 53, 462, 642, 867
Eco32I GATATC 2 cut(s) 93, 3201
Eco47I GGWCC 5 cut(s) 850, 1532, 1558, 2891, 3156
Eco53kI GAGCTC 1 cut(s) 640
Eco57I CTGAAG 5 cut(s) 369, 1509, 1974, 2706, 2805
Eco72I CACGTG 1 cut(s) 2414
Eco88I CYCGRG 2 cut(s) 23, 2880
Eco91I GGTNACC 2 cut(s) 134, 160
EcoICRI GAGCTC 1 cut(s) 640
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoO109I RGGNCCY 2 cut(s) 1558, 3156
EcoO65I GGTNACC 2 cut(s) 134, 160
EcoRI GAATTC 1 cut(s) 1521
EcoRII CCWGG 3 cut(s) 852, 1653, 2713
EcoRV GATATC 2 cut(s) 93, 3201
EcoT14I CCWWGG 2 cut(s) 765, 1450
EcoT22I ATGCAT 1 cut(s) 1584
EcoT38I GRGCYC 4 cut(s) 53, 462, 642, 867
ErhI CCWWGG 2 cut(s) 765, 1450
Esp3I CGTCTC 3 cut(s) 625, 766, 2000
FalI AAGNNNNNCTT 4 cut(s) 1347, 1379, 2445, 2477
FaqI GGGAC 1 cut(s) 643
FauI CCCGC 4 cut(s) 60, 67, 874, 968
FbaI TGATCA 3 cut(s) 2107, 3094, 3415
FblI GTMKAC 3 cut(s) 705, 774, 2598
FokI GGATG 4 cut(s) 297, 1003, 1390, 2246
FriOI GRGCYC 4 cut(s) 53, 462, 642, 867
FspBI CTAG 5 cut(s) 464, 1041, 2324, 2531, 3126
GsaI CCCAGC 2 cut(s) 889, 1030
GsuI CTGGAG 4 cut(s) 626, 1922, 2631, 2736
HaeIII GGCC 7 cut(s) 63, 231, 857, 1653, 1658, 1940, 2206
HapII CCGG 5 cut(s) 24, 71, 584, 724, 815
HgaI GACGC 3 cut(s) 655, 760, 992
Hin1I GRCGYC 3 cut(s) 756, 771, 984
HincII GTYRAC 2 cut(s) 706, 775
HindII GTYRAC 2 cut(s) 706, 775
HindIII AAGCTT 3 cut(s) 611, 1514, 3056
HpaII CCGG 5 cut(s) 24, 71, 584, 724, 815
Hpy99I CGWCG 7 cut(s) 671, 677, 755, 758, 761, 776, 986
HpyCH4IV ACGT 3 cut(s) 756, 2413, 3726
HpySE526I ACGT 3 cut(s) 756, 2413, 3726
Hsp92I GRCGYC 3 cut(s) 756, 771, 984
Kpn2I TCCGGA 1 cut(s) 583
Ksp22I TGATCA 3 cut(s) 2107, 3094, 3415
LguI GCTCTTC 2 cut(s) 630, 2116
LmnI GCTCC 9 cut(s) 325, 586, 645, 806, 862, 1426, 2612, 3564, 3667
LweI GCATC 9 cut(s) 1025, 1099, 1458, 1569, 1714, 2546, 2719, 3097, 3210
MaeI CTAG 5 cut(s) 464, 1041, 2324, 2531, 3126
MaeII ACGT 3 cut(s) 756, 2413, 3726
MaeIII GTNAC 8 cut(s) 32, 77, 134, 160, 928, 1933, 2678, 2902
MbiI CCGCTC 1 cut(s) 869
MfeI CAATTG 4 cut(s) 1130, 2337, 3111, 3590
MflI RGATCY 3 cut(s) 415, 483, 2579
MhlI GDGCHC 8 cut(s) 53, 399, 462, 642, 867, 1431, 2386, 3569
MlsI TGGCCA 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 6 cut(s) 262, 925, 2056, 2336, 2501, 2851
MmeI TCCRAC 5 cut(s) 120, 461, 1306, 1837, 2205
Mox20I TGGCCA 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 1584
MroI TCCGGA 1 cut(s) 583
MscI TGGCCA 1 cut(s) 231
MslI CAYNNNNRTG 4 cut(s) 392, 1713, 3176, 3644
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 5 cut(s) 24, 71, 584, 724, 815
MspR9I CCNGG 5 cut(s) 24, 25, 854, 1655, 2715
MunI CAATTG 4 cut(s) 1130, 2337, 3111, 3590
Mva1269I GAATGC 1 cut(s) 3010
MvaI CCWGG 3 cut(s) 854, 1655, 2715
MvnI CGCG 2 cut(s) 732, 750
NciI CCSGG 2 cut(s) 24, 25
NlaIV GGNNCC 4 cut(s) 485, 808, 864, 1560
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 4 cut(s) 160, 928, 2678, 2902
NruI TCGCGA 1 cut(s) 732
NsiI ATGCAT 1 cut(s) 1584
NspI RCATGY 3 cut(s) 2931, 3215, 3792
OliI CACNNNNGTG 2 cut(s) 392, 1713
PaeI GCATGC 1 cut(s) 3792
PagI TCATGA 2 cut(s) 2811, 3606
PceI AGGCCT 1 cut(s) 1658
PciSI GCTCTTC 2 cut(s) 630, 2116
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PctI GAATGC 1 cut(s) 3010
PfeI GAWTC 5 cut(s) 307, 727, 1818, 2546, 3181
PflFI GACNNNGTC 2 cut(s) 755, 758
PflMI CCANNNNNTGG 1 cut(s) 2428
PleI GAGTC 6 cut(s) 262, 925, 2056, 2335, 2500, 2850
PmaCI CACGTG 1 cut(s) 2414
PmlI CACGTG 1 cut(s) 2414
PpsI GAGTC 6 cut(s) 262, 925, 2056, 2335, 2500, 2850
Ppu21I YACGTR 1 cut(s) 2414
PpuMI RGGWCCY 2 cut(s) 1558, 3156
PshBI ATTAAT 3 cut(s) 2913, 3134, 3600
Psp124BI GAGCTC 1 cut(s) 642
Psp5II RGGWCCY 2 cut(s) 1558, 3156
Psp6I CCWGG 3 cut(s) 852, 1653, 2713
PspCI CACGTG 1 cut(s) 2414
PspEI GGTNACC 2 cut(s) 134, 160
PspFI CCCAGC 2 cut(s) 885, 1026
PspGI CCWGG 3 cut(s) 852, 1653, 2713
PspN4I GGNNCC 4 cut(s) 485, 808, 864, 1560
PspPI GGNCC 7 cut(s) 61, 850, 1532, 1558, 1651, 2891, 3156
PspPPI RGGWCCY 2 cut(s) 1558, 3156
PstI CTGCAG 1 cut(s) 2926
PsuI RGATCY 3 cut(s) 415, 483, 2579
PsyI GACNNNGTC 2 cut(s) 755, 758
RruI TCGCGA 1 cut(s) 732
RsaI GTAC 5 cut(s) 1486, 2410, 2744, 3103, 3282
RsaNI GTAC 5 cut(s) 1485, 2409, 2743, 3102, 3281
RseI CAYNNNNRTG 4 cut(s) 392, 1713, 3176, 3644
SacI GAGCTC 1 cut(s) 642
SalI GTCGAC 2 cut(s) 704, 773
SapI GCTCTTC 2 cut(s) 630, 2116
Sau96I GGNCC 7 cut(s) 61, 850, 1532, 1558, 1651, 2891, 3156
ScaI AGTACT 1 cut(s) 1486
SchI GAGTC 6 cut(s) 262, 925, 2056, 2336, 2501, 2851
ScrFI CCNGG 5 cut(s) 24, 25, 854, 1655, 2715
SduI GDGCHC 8 cut(s) 53, 399, 462, 642, 867, 1431, 2386, 3569
SfaNI GCATC 9 cut(s) 1025, 1099, 1458, 1569, 1714, 2546, 2719, 3097, 3210
SfcI CTRYAG 5 cut(s) 142, 1047, 2853, 2922, 3774
SinI GGWCC 5 cut(s) 850, 1532, 1558, 2891, 3156
SmaI CCCGGG 1 cut(s) 25
SmiI ATTTAAAT 1 cut(s) 2103
SmiMI CAYNNNNRTG 4 cut(s) 392, 1713, 3176, 3644
SmlI CTYRAG 4 cut(s) 1660, 2489, 2662, 3224
SmoI CTYRAG 4 cut(s) 1660, 2489, 2662, 3224
SphI GCATGC 1 cut(s) 3792
SseBI AGGCCT 1 cut(s) 1658
SspI AATATT 2 cut(s) 1911, 3506
SspMI CTAG 5 cut(s) 464, 1041, 2324, 2531, 3126
SstI GAGCTC 1 cut(s) 642
StuI AGGCCT 1 cut(s) 1658
StyD4I CCNGG 5 cut(s) 22, 23, 852, 1653, 2713
StyI CCWWGG 2 cut(s) 765, 1450
SwaI ATTTAAAT 1 cut(s) 2103
TaiI ACGT 3 cut(s) 759, 2416, 3729
TatI WGTACW 2 cut(s) 1484, 3101
TauI GCSGC 1 cut(s) 892
TfiI GAWTC 5 cut(s) 307, 727, 1818, 2546, 3181
TscAI CASTG 8 cut(s) 91, 948, 961, 1201, 2429, 2797, 3006, 3418
TseFI GTSAC 4 cut(s) 160, 928, 2678, 2902
Tsp45I GTSAC 4 cut(s) 160, 928, 2678, 2902
TspGWI ACGGA 3 cut(s) 1050, 2061, 2636
TspMI CCCGGG 1 cut(s) 23
TspRI CASTG 8 cut(s) 91, 948, 961, 1201, 2429, 2797, 3006, 3418
Tth111I GACNNNGTC 2 cut(s) 755, 758
Van91I CCANNNNNTGG 1 cut(s) 2428
VneI GTGCAC 1 cut(s) 2382
VpaK11BI GGWCC 5 cut(s) 850, 1532, 1558, 2891, 3156
VspI ATTAAT 3 cut(s) 2913, 3134, 3600
XagI CCTNNNNNAGG 1 cut(s) 539
XceI RCATGY 3 cut(s) 2931, 3215, 3792
XmaI CCCGGG 1 cut(s) 23
XmiI GTMKAC 3 cut(s) 705, 774, 2598
XspI CTAG 5 cut(s) 464, 1041, 2324, 2531, 3126
ZraI GACGTC 1 cut(s) 757
ZrmI AGTACT 1 cut(s) 1486
Zsp2I ATGCAT 1 cut(s) 1584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.