Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000795.1

Orthogroup ID

OG0016981

Physical Location & Seq

Genomic Coordinates Reverse (-)

477384 .. 478565

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000795.1_g000109.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggagctatttggaaagtgcttgggatatgtgaagtctaccttagatgctcttcatatgatgcagaacttgggattcaaacccaattatcagaattgccttcagttattctcaccttatgttaatatgttttttgtgagagaagcatttatgtgtttggagttgctgcaaaatgagtatcagattgatcaagtctatgtcaaggccattgttgcaagtgcaattattcaattgcacttaattgtcaaggctattgttgcaggtgcaattattcaattgcccttaattgaagctactgagttgtacgagggaatggataaaaatactaaagttgctggtgacattattaagagtatgaaaaaaatttcagaaaaggtaattgatagagtgctctataaattggatgaattggtatgtccttatgtgcataagattcttgttttgattgaacctctattgattgatgaagactattatgcacgtgttgaggggagagaaattacctccaatcttagtaaagcttctgcaattgcattttatatcttctttgagaatccaaatgcagaagttgttgctgcaattatggagaacaagcaagatgctgtggattaccttcattggaccttcttgtacaggaggctcactcaaaatcccagctattataatcttcagggtattcagaggcgtctttctgattatctctcagagcttcttgaaaatacattgactgacttggagagaagtaaagaggatgttgaggaatcacaaatgaggactgctgcatttggagcgtcgaatgaagttgtaaagtgctgcatcaatgagattgctccaatggtgatgcacttagttccaattattatgaataaactccaccagactcttgaaggacagaggccttcaattgatgaaagagacaagcagaatgaactgcaaggccttctttgtggttgcttgcaggtcatcatacagaagcttagggtcacacagattgtccaaattaatagagctgcaaacatttgtcttgagtactgcacaggtttgagagttatcgatttgaatgttaacaagatttactctgaactattgattatgcctatgcttgtcattcttgcaattgtttctatccttgaggatcaatgttgttggaatgttggttcattaacgacagaacatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N

Protein Analysis

393

Amino Acids

44.98

Weight (kDa)

5.15

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106841 RchiOBHm_Chr4g0417791
rosa_laevigata	RLG00000013441
rosa_multiflora	Rmu_sc0000751.1_g000031 Rmu_sc0000795.1_g000109 Rmu_sc0006098.1_g000003
rosa_roxburghii	Rroxscaffold_2G00109800 Rroxscaffold_3G00250690 Rroxscaffold_6G00399130
rosa_rugosa	Rorug03G0363900.1
rosa_samantha	Rh2AG190200 Rh2CG336800 Rh7DG426300
rosa_wichuraiana	Rw1G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AarI	CACCTGC	1 cut(s)	251
Acc36I	ACCTGC	2 cut(s)	251, 949
AccI	GTMKAC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	1143
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	86, 653
AcvI	CACGTG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	685
AfaI	GTAC	3 cut(s)	305, 632, 1031
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	9 cut(s)	79, 230, 275, 290, 449, 716, 887, 903, 1060
AloI	GAACNNNNNNTCC	2 cut(s)	1141, 1173
AluBI	AGCT	7 cut(s)	7, 293, 521, 657, 709, 976, 1010
AluI	AGCT	7 cut(s)	7, 293, 521, 657, 709, 976, 1010
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	909
AlwI	GGATC	1 cut(s)	1143
AoxI	GGCC	3 cut(s)	204, 896, 937
ApeKI	GCWGC	5 cut(s)	166, 575, 779, 813, 1010
ApoI	RAATTY	1 cut(s)	363
AseI	ATTAAT	1 cut(s)	1002
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	3 cut(s)	105, 350, 850
AvaII	GGWCC	1 cut(s)	621
BbrPI	CACGTG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	153, 562, 766, 800, 997
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	909
BfuAI	ACCTGC	2 cut(s)	251, 949
BisI	GCNGC	5 cut(s)	167, 576, 780, 814, 1011
BlsI	GCNGC	5 cut(s)	168, 577, 781, 815, 1012
BmcAI	AGTACT	1 cut(s)	1031
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmsI	GCATC	5 cut(s)	37, 51, 589, 825, 831
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
Bpu10I	CCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	2 cut(s)	1046, 1151
Bsa29I	ATCGAT	1 cut(s)	1053
BsaAI	YACGTR	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	685
BseCI	ATCGAT	1 cut(s)	1053
BseGI	GGATG	2 cut(s)	409, 757
BseMII	CTCAG	2 cut(s)	288, 717
BseXI	GCAGC	5 cut(s)	153, 562, 766, 800, 997
BseYI	CCCAGC	1 cut(s)	653
BsgI	GTGCAG	1 cut(s)	1018
BshFI	GGCC	3 cut(s)	206, 898, 939
BshVI	ATCGAT	1 cut(s)	1053
BsiHKAI	GWGCWC	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	909
BsnI	GGCC	3 cut(s)	206, 898, 939
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	187, 1135
BspANI	GGCC	3 cut(s)	206, 898, 939
BspCNI	CTCAG	2 cut(s)	289, 716
BspDI	ATCGAT	1 cut(s)	1053
BspMI	ACCTGC	2 cut(s)	251, 949
BspPI	GGATC	1 cut(s)	1143
BspQI	GCTCTTC	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	630
BssMI	GATC	2 cut(s)	187, 1135
BssNI	GRCGYC	1 cut(s)	685
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	685
BstAUI	TGTACA	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	956
BstDEI	CTNAG	6 cut(s)	43, 297, 512, 703, 847, 977
BstF5I	GGATG	2 cut(s)	409, 757
BstKTI	GATC	2 cut(s)	190, 1138
BstMAI	GTCTC	1 cut(s)	909
BstMBI	GATC	2 cut(s)	187, 1135
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 257, 788
BstV1I	GCAGC	5 cut(s)	153, 562, 766, 800, 997
BstV2I	GAAGAC	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	1053
BsuRI	GGCC	3 cut(s)	206, 898, 939
BsuTUI	ATCGAT	1 cut(s)	1053
BtsCI	GGATG	2 cut(s)	409, 757
BveI	ACCTGC	2 cut(s)	251, 949
Cac8I	GCNNGC	1 cut(s)	956
Cfr13I	GGNCC	1 cut(s)	621
ClaI	ATCGAT	1 cut(s)	1053
CseI	GACGC	2 cut(s)	674, 780
Csp6I	GTAC	3 cut(s)	304, 631, 1030
CviAII	CATG	1 cut(s)	1175
CviQI	GTAC	3 cut(s)	304, 631, 1030
DdeI	CTNAG	6 cut(s)	43, 297, 512, 703, 847, 977
DpnI	GATC	2 cut(s)	189, 1137
DpnII	GATC	2 cut(s)	187, 1135
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco147I	AGGCCT	2 cut(s)	898, 939
Eco47I	GGWCC	1 cut(s)	621
Eco57I	CTGAAG	2 cut(s)	86, 653
Eco72I	CACGTG	1 cut(s)	482
FaeI	CATG	1 cut(s)	1178
FalI	AAGNNNNNCTT	4 cut(s)	26, 58, 927, 959
FatI	CATG	1 cut(s)	1174
FauNDI	CATATG	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	167, 576, 780, 814, 1011
FokI	GGATG	2 cut(s)	416, 764
Fsp4HI	GCNGC	5 cut(s)	167, 576, 780, 814, 1011
GluI	GCNGC	5 cut(s)	167, 576, 780, 814, 1011
GsaI	CCCAGC	1 cut(s)	657
HaeIII	GGCC	3 cut(s)	206, 898, 939
HgaI	GACGC	2 cut(s)	674, 780
Hin1I	GRCGYC	1 cut(s)	685
Hin1II	CATG	1 cut(s)	1178
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HindIII	AAGCTT	2 cut(s)	519, 974
HinfI	GANTC	5 cut(s)	75, 433, 553, 761, 880
HpaI	GTTAAC	1 cut(s)	1066
HphI	GGTGA	3 cut(s)	105, 350, 850
Hpy166II	GTNNAC	2 cut(s)	39, 1066
Hpy188I	TCNGA	7 cut(s)	93, 183, 370, 681, 694, 706, 1081
Hpy188III	TCNNGA	3 cut(s)	713, 884, 1025
Hpy8I	GTNNAC	2 cut(s)	39, 1066
Hpy99I	CGWCG	1 cut(s)	796
HpyAV	CCTTC	6 cut(s)	110, 623, 634, 881, 909, 950
HpyCH4IV	ACGT	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 257, 788
HpyF3I	CTNAG	6 cut(s)	43, 297, 512, 703, 847, 977
HpySE526I	ACGT	1 cut(s)	481
Hsp92I	GRCGYC	1 cut(s)	685
Hsp92II	CATG	1 cut(s)	1178
Ksp22I	TGATCA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	1066
Kzo9I	GATC	2 cut(s)	187, 1135
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	4, 788, 835
LpnPI	CCDG	8 cut(s)	246, 321, 619, 656, 667, 890, 944, 1023
Lsp1109I	GCAGC	5 cut(s)	153, 562, 766, 800, 997
LweI	GCATC	5 cut(s)	37, 51, 589, 825, 831
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	2 cut(s)	338, 982
MalI	GATC	2 cut(s)	189, 1137
MboI	GATC	2 cut(s)	187, 1135
MboII	GAAGA	4 cut(s)	44, 479, 535, 659
MfeI	CAATTG	5 cut(s)	230, 275, 528, 903, 1116
MhlI	GDGCHC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	874
MmeI	TCCRAC	1 cut(s)	1127
MseI	TTAA	7 cut(s)	123, 239, 284, 348, 1002, 1065, 1163
MslI	CAYNNNNRTG	1 cut(s)	151
MunI	CAATTG	5 cut(s)	230, 275, 528, 903, 1116
MwoI	GCNNNNNNNGC	3 cut(s)	212, 257, 788
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	2 cut(s)	187, 1135
NlaIII	CATG	1 cut(s)	1178
NmuCI	GTSAC	2 cut(s)	338, 982
PaqCI	CACCTGC	1 cut(s)	251
PceI	AGGCCT	2 cut(s)	898, 939
PciSI	GCTCTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	75, 433, 553, 761
PkrI	GCNGC	5 cut(s)	168, 577, 781, 815, 1012
PleI	GAGTC	1 cut(s)	874
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	874
Ppu21I	YACGTR	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	1002
PsiI	TTATAA	1 cut(s)	663
PspCI	CACGTG	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	653
PspPI	GGNCC	1 cut(s)	621
RsaI	GTAC	3 cut(s)	305, 632, 1031
RsaNI	GTAC	3 cut(s)	304, 631, 1030
RseI	CAYNNNNRTG	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	7 cut(s)	123, 239, 284, 348, 1002, 1065, 1163
SatI	GCNGC	5 cut(s)	167, 576, 780, 814, 1011
Sau3AI	GATC	2 cut(s)	187, 1135
Sau96I	GGNCC	1 cut(s)	621
ScaI	AGTACT	1 cut(s)	1031
SchI	GAGTC	1 cut(s)	874
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	5 cut(s)	37, 51, 589, 825, 831
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	1025, 1130
SmoI	CTYRAG	2 cut(s)	1025, 1130
SseBI	AGGCCT	2 cut(s)	898, 939
StuI	AGGCCT	2 cut(s)	898, 939
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	2 cut(s)	794, 1053
TatI	WGTACW	2 cut(s)	630, 1029
TfiI	GAWTC	4 cut(s)	75, 433, 553, 761
Tru1I	TTAA	7 cut(s)	123, 239, 284, 348, 1002, 1065, 1163
Tru9I	TTAA	7 cut(s)	123, 239, 284, 348, 1002, 1065, 1163
TseFI	GTSAC	2 cut(s)	338, 982
TseI	GCWGC	5 cut(s)	166, 575, 779, 813, 1010
Tsp45I	GTSAC	2 cut(s)	338, 982
VpaK11BI	GGWCC	1 cut(s)	621
VspI	ATTAAT	1 cut(s)	1002
XapI	RAATTY	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.