Rh2AG190200

Splicing factor 3B subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016981
Physical Location & Seq
Reverse (-)
18765946 .. 18767988
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG190200.1

Sequence Viewer

Length: 444 bp
ATGGAAGCTACTAAGTTGTACAAGGGAATGGATAAAAATACTAAAGCTGCTAATGACATTATTAAGAGTACGAAAAAAATTGCAGAAAAGGTAATTGATGGAGTGATCTGTAAATTGGCTGAATTGGTACGTCCTTCTGTGCATAAGATTCTTGTTTTGATTGAACCTCTATTGATTGATGACGACTATTATGCACGTGTTGAGGGGAGACTCACTCAAAATCCCAGCTATTATAATCTTCAGGGTATTCAGAGGAGTCTTTCAGATTACCTCTCAGAGCTTATTGAAAATACATTGACTGACTTGGAGAGAAGCAAAGAAGATGTTGAGGAATCACAAATGAGGACTGCTGCATTTGGAGTGTCAAATGAAGTTGTAAAGTGCTGCATCAATGAGATTGCTCCAATGGTGATGCACTTAATTAGTTCCAATTATTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SF3b1

Protein Analysis

147

Amino Acids

16.69

Weight (kDa)

5.15

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_SNRNP200 PF23445 69 - 106 3.6e-10 Winged Helix-turn-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 224
AcvI CACGTG 1 cut(s) 197
AfaI GTAC 3 cut(s) 20, 70, 129
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 2 cut(s) 164, 287
AluBI AGCT 4 cut(s) 8, 47, 228, 280
AluI AGCT 4 cut(s) 8, 47, 228, 280
Alw26I GTCTC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 47, 350, 384
AsuHPI GGTGA 1 cut(s) 421
BbrPI CACGTG 1 cut(s) 197
BbvI GCAGC 3 cut(s) 34, 337, 371
BccI CCATC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BcoDI GTCTC 1 cut(s) 202
BisI GCNGC 3 cut(s) 48, 351, 385
BlsI GCNGC 3 cut(s) 49, 352, 386
BmsI GCATC 2 cut(s) 396, 402
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BsaAI YACGTR 1 cut(s) 197
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 268
BseXI GCAGC 3 cut(s) 34, 337, 371
BseYI CCCAGC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 18
BssMI GATC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 12, 274
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 34, 337, 371
Csp6I GTAC 3 cut(s) 19, 69, 128
CviJI RGCY 5 cut(s) 8, 47, 119, 228, 280
CviKI_1 RGCY 5 cut(s) 8, 47, 119, 228, 280
CviQI GTAC 3 cut(s) 19, 69, 128
DdeI CTNAG 2 cut(s) 12, 274
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 197
FaiI YATR 4 cut(s) 144, 192, 234, 438
Fnu4HI GCNGC 3 cut(s) 48, 351, 385
Fsp4HI GCNGC 3 cut(s) 48, 351, 385
GluI GCNGC 3 cut(s) 48, 351, 385
GsaI CCCAGC 1 cut(s) 228
HinfI GANTC 4 cut(s) 148, 210, 256, 332
HphI GGTGA 1 cut(s) 421
Hpy188I TCNGA 3 cut(s) 252, 265, 277
HpyAV CCTTC 1 cut(s) 144
HpyCH4IV ACGT 2 cut(s) 130, 196
HpyCH4V TGCA 6 cut(s) 83, 142, 194, 353, 387, 415
HpyF3I CTNAG 2 cut(s) 12, 274
HpySE526I ACGT 2 cut(s) 130, 196
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 2 cut(s) 227, 238
Lsp1109I GCAGC 3 cut(s) 34, 337, 371
LweI GCATC 2 cut(s) 396, 402
MaeII ACGT 2 cut(s) 130, 196
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 2 cut(s) 230, 332
MluCI AATT 6 cut(s) 78, 93, 113, 122, 420, 430
MlyI GAGTC 2 cut(s) 204, 265
MnlI CCTC 6 cut(s) 177, 196, 246, 281, 322, 336
MseI TTAA 2 cut(s) 63, 419
NdeII GATC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 148, 332
PkrI GCNGC 3 cut(s) 49, 352, 386
PleI GAGTC 2 cut(s) 204, 264
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 2 cut(s) 204, 264
Ppu21I YACGTR 1 cut(s) 197
PsiI TTATAA 1 cut(s) 234
PspCI CACGTG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 224
RsaI GTAC 3 cut(s) 20, 70, 129
RsaNI GTAC 3 cut(s) 19, 69, 128
SaqAI TTAA 2 cut(s) 63, 419
SatI GCNGC 3 cut(s) 48, 351, 385
Sau3AI GATC 1 cut(s) 105
SchI GAGTC 2 cut(s) 204, 265
SetI ASST 9 cut(s) 10, 49, 93, 133, 169, 199, 230, 273, 282
SfaNI GCATC 2 cut(s) 396, 402
SgeI CNNG 7 cut(s) 34, 164, 207, 209, 237, 254, 316
Sse9I AATT 6 cut(s) 78, 93, 113, 122, 420, 430
TaiI ACGT 2 cut(s) 133, 199
TasI AATT 6 cut(s) 78, 93, 113, 122, 420, 430
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 2 cut(s) 148, 332
Tru1I TTAA 2 cut(s) 63, 419
Tru9I TTAA 2 cut(s) 63, 419
TseI GCWGC 3 cut(s) 47, 350, 384
TspDTI ATGAA 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.