Rmu_sc0006098.1_g000003

importin subunit beta-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006098.1
OG0016981
Physical Location & Seq
Reverse (-)
1547 .. 2507
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006098.1_g000003.1.cds

Sequence Viewer

Length: 738 bp
atgaggactgctgcatttggagcattgaatgaagttgtaaagtgctgcatcaatgagattgctccaatggtgatgcacttagttccaattattatgaatgaactccaccagactcttgaaggacagaggccttcaattgatgaaagagacaagcaaaatgaactgcaaggccttctttgtggttgcttgcaggtcatcatacagaagcttagggtcacacagattgtccacattaatagggctgcaaacatttgtcgtgagcactgcacagtgggagttgattactttttgcaagctgcaactctacaagaattggtacaagtttccagtgatcagatttctttatataagctcttggttgacatcatgcttcttagtcttgggtgccttatgaaggctttggctttgcttcttggtgaatattttgaaatgctgcatgctgcacccattgcttccttgacagttgtaaaatttgtgaggagcaccacaacaatagtgatgatacagttggtgattaatgtcatgaacccatcgtttctacttgtgaagaggatcattgctacggctgcatattcagctccacttgctgctttccagactttagatgacaactatatttctattgcgaaagttggtgtttacaatgctcatgaagaagttggtagcgctctttgttttctagctaccattactacaggcatgaaggcatgccttattttaggggggcagaattgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

245

Amino Acids

26.86

Weight (kDa)

6.29

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 384
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 1 cut(s) 470
AfaI GTAC 1 cut(s) 318
AfeI AGCGCT 1 cut(s) 667
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 4 cut(s) 28, 119, 135, 428
AluBI AGCT 5 cut(s) 208, 296, 352, 578, 683
AluI AGCT 5 cut(s) 208, 296, 352, 578, 683
Alw21I GWGCWC 2 cut(s) 264, 485
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 560
Aor51HI AGCGCT 1 cut(s) 667
AoxI GGCC 2 cut(s) 128, 169
ApeKI GCWGC 8 cut(s) 11, 45, 242, 296, 433, 440, 566, 587
ApoI RAATTY 1 cut(s) 470
AseI ATTAAT 2 cut(s) 234, 516
AspLEI GCGC 1 cut(s) 668
AsuHPI GGTGA 3 cut(s) 82, 428, 523
BanI GGYRCC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 264, 485
BbvI GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
BccI CCATC 1 cut(s) 538
BceAI ACGGC 1 cut(s) 579
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 680
BfmI CTRYAG 1 cut(s) 693
BfoI RGCGCY 1 cut(s) 669
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
BlsI GCNGC 8 cut(s) 13, 47, 244, 298, 435, 442, 568, 589
BmiI GGNNCC 1 cut(s) 386
BmsI GCATC 2 cut(s) 57, 63
Bpu10I CCTNAGC 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 2 cut(s) 447, 555
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 2 cut(s) 447, 555
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 493
BseXI GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
BsgI GTGCAG 2 cut(s) 250, 426
BshFI GGCC 2 cut(s) 130, 171
BshNI GGYRCC 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 264, 485
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 2 cut(s) 130, 171
Bsp1286I GDGCHC 2 cut(s) 264, 485
Bsp143I GATC 2 cut(s) 331, 552
BspANI GGCC 2 cut(s) 130, 171
BspHI TCATGA 2 cut(s) 522, 649
BspLI GGNNCC 1 cut(s) 386
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 447, 555
BsrI ACTGG 1 cut(s) 327
BssMI GATC 2 cut(s) 331, 552
Bst4CI ACNGT 3 cut(s) 271, 463, 507
Bst6I CTCTTC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 188, 294, 438, 709
BstDEI CTNAG 3 cut(s) 79, 209, 374
BstENI CCTNNNNNAGG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 2 cut(s) 334, 555
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 331, 552
BstMWI GCNNNNNNNGC 5 cut(s) 20, 449, 566, 575, 584
BstNSI RCATGY 2 cut(s) 440, 711
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
BsuRI GGCC 2 cut(s) 130, 171
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 262, 276, 334
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 4 cut(s) 188, 294, 438, 709
CciI TCATGA 2 cut(s) 522, 649
CfoI GCGC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 317
CviAII CATG 6 cut(s) 367, 437, 523, 650, 700, 708
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 3 cut(s) 79, 209, 374
DpnI GATC 2 cut(s) 333, 554
DpnII GATC 2 cut(s) 331, 552
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco147I AGGCCT 2 cut(s) 130, 171
Eco47III AGCGCT 1 cut(s) 667
EcoNI CCTNNNNNAGG 1 cut(s) 392
FaeI CATG 6 cut(s) 370, 440, 526, 653, 703, 711
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 6 cut(s) 366, 436, 522, 649, 699, 707
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
Fsp4HI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
FspBI CTAG 1 cut(s) 680
GlaI GCGC 1 cut(s) 667
GluI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 2 cut(s) 130, 171
HhaI GCGC 1 cut(s) 668
Hin1II CATG 6 cut(s) 370, 440, 526, 653, 703, 711
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 1 cut(s) 112
HphI GGTGA 3 cut(s) 82, 428, 523
Hpy166II GTNNAC 3 cut(s) 229, 361, 640
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 5 cut(s) 116, 257, 523, 595, 650
Hpy8I GTNNAC 3 cut(s) 229, 361, 640
HpyAV CCTTC 5 cut(s) 113, 141, 182, 388, 697
HpyCH4III ACNGT 3 cut(s) 271, 463, 507
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 449, 566, 575, 584
HpyF3I CTNAG 3 cut(s) 79, 209, 374
Hsp92II CATG 6 cut(s) 370, 440, 526, 653, 703, 711
HspAI GCGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 331, 552
LmnI GCTCC 4 cut(s) 20, 67, 480, 583
LpnPI CCDG 5 cut(s) 122, 176, 340, 608, 681
Lsp1109I GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
LweI GCATC 2 cut(s) 57, 63
MaeI CTAG 1 cut(s) 680
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 333, 554
MboI GATC 2 cut(s) 331, 552
MboII GAAGA 2 cut(s) 559, 665
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 264, 485
MluCI AATT 5 cut(s) 87, 135, 311, 470, 730
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 3 cut(s) 120, 471, 543
MseI TTAA 2 cut(s) 234, 516
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 5 cut(s) 20, 449, 566, 575, 584
NdeII GATC 2 cut(s) 331, 552
NlaIII CATG 6 cut(s) 370, 440, 526, 653, 703, 711
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 2 cut(s) 440, 711
PaeI GCATGC 2 cut(s) 440, 711
PagI TCATGA 2 cut(s) 522, 649
PceI AGGCCT 2 cut(s) 130, 171
PkrI GCNGC 8 cut(s) 13, 47, 244, 298, 435, 442, 568, 589
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PshBI ATTAAT 2 cut(s) 234, 516
PspN4I GGNNCC 1 cut(s) 386
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 234, 516
SatI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
Sau3AI GATC 2 cut(s) 331, 552
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 2 cut(s) 264, 485
SetI ASST 6 cut(s) 195, 210, 298, 354, 580, 685
SfaNI GCATC 2 cut(s) 57, 63
SfcI CTRYAG 1 cut(s) 693
SphI GCATGC 2 cut(s) 440, 711
Sse9I AATT 5 cut(s) 87, 135, 311, 470, 730
SseBI AGGCCT 2 cut(s) 130, 171
SspI AATATT 1 cut(s) 422
SspMI CTAG 1 cut(s) 680
StuI AGGCCT 2 cut(s) 130, 171
TaaI ACNGT 3 cut(s) 271, 463, 507
TasI AATT 5 cut(s) 87, 135, 311, 470, 730
Tru1I TTAA 2 cut(s) 234, 516
Tru9I TTAA 2 cut(s) 234, 516
TscAI CASTG 3 cut(s) 269, 276, 334
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 8 cut(s) 11, 45, 242, 296, 433, 440, 566, 587
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 9 cut(s) 45, 110, 114, 156, 174, 407, 539, 666, 716
TspRI CASTG 3 cut(s) 269, 276, 334
VspI ATTAAT 2 cut(s) 234, 516
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 1 cut(s) 470
XceI RCATGY 2 cut(s) 440, 711
XspI CTAG 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.