RLG00000013441

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016981
Physical Location & Seq
Reverse (-)
31575434 .. 31576735
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013441

Sequence Viewer

Length: 702 bp
ATGTATAATGAACGGCATGAGCCACATAAAGAATTTGCAGTTGATTTGGAGCACAACCAATATCGACCCTTCCAAGGATTGACTTGTTTGATGCAAAATTCTACAAGCACTGAAGATTTTATAGTAGATACTTTGAAGCTTAGAATTCATATTGGTCCATATCTTAGGGAAGTTTTCAAGGACCCTCCTAAGAGAAAAGTGATGCATGGAGTTGAAGTAGAAATTTGGCCTCCTGATGATGGGGAATGGCTGGATTTGGATGGAGAAATGTATTGTCGAGTTGTTAGAGGATTTCTTGATAATAAAAATGTACAAGAGTTGGCAGTTTTGATTATTAAAGCTCAGAAGCTAGAGTCTTCTACAATTGTGGTTGATAGATCATACTGTTGCAGTCTTATTATTGTTTGTGCACATGAACTGCAAACTGCTAAAGGTACACGTGAAAGCCACTGCTTGGAATTGGAGGTAAATGCAAAAGAAGCTAAACTTGAATTGCAAAGGAAGTTGAACGAACTTGAGTCCTTGCTAACAGGTTTAGAGAAGAATGAGAACGAACTAGAGGCATCTTTAGAATCTGTATCAGGGAAATGGAAACATAAACAAGGATCTTTCCAAAGTTTTGTAGACTATCAAGCTGGAGCTTTGACGGAACTAAATGCTGCTTTGCAATCTACAAGGCGTGAAATCTTGAGTGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

234

Amino Acids

26.73

Weight (kDa)

5.45

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_A_exo1 PF01612 4 - 72 6.7e-11 3'-5' exonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 454
AccI GTMKAC 1 cut(s) 624
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 4 cut(s) 32, 97, 144, 222
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 1 cut(s) 440
AfaI GTAC 2 cut(s) 312, 436
AfiI CCNNNNNNNGG 3 cut(s) 74, 239, 454
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 5 cut(s) 136, 178, 215, 491, 508
AluBI AGCT 6 cut(s) 139, 341, 349, 482, 635, 641
AluI AGCT 6 cut(s) 139, 341, 349, 482, 635, 641
Alw21I GWGCWC 2 cut(s) 54, 412
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 1 cut(s) 613
AoxI GGCC 1 cut(s) 227
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 4 cut(s) 32, 97, 144, 222
AspS9I GGNCC 2 cut(s) 155, 181
AvaII GGWCC 2 cut(s) 155, 181
BaeGI GKGCMC 1 cut(s) 412
BbrPI CACGTG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 54, 412
BbvI GCAGC 1 cut(s) 646
BccI CCATC 2 cut(s) 233, 254
BceAI ACGGC 1 cut(s) 29
BfaI CTAG 2 cut(s) 350, 557
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
Bme18I GGWCC 2 cut(s) 155, 181
BmgT120I GGNCC 2 cut(s) 155, 181
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 3 cut(s) 81, 192, 572
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 239, 454
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 74, 239, 454
BseMII CTCAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 1 cut(s) 646
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 54, 412
BslI CCNNNNNNNGG 3 cut(s) 74, 239, 454
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 54, 412
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 377, 605
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 1 cut(s) 613
BsrGI TGTACA 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 377, 605
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 440
BstDEI CTNAG 4 cut(s) 140, 164, 189, 342
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 380, 608
BstMBI GATC 2 cut(s) 377, 605
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 108, 448
Cfr13I GGNCC 2 cut(s) 155, 181
Csp6I GTAC 2 cut(s) 311, 435
CviAII CATG 3 cut(s) 17, 206, 413
CviQI GTAC 2 cut(s) 311, 435
DdeI CTNAG 4 cut(s) 140, 164, 189, 342
DpnI GATC 2 cut(s) 379, 607
DpnII GATC 2 cut(s) 377, 605
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 155, 181
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 3 cut(s) 20, 209, 416
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FatI CATG 3 cut(s) 16, 205, 412
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 660
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 2 cut(s) 350, 557
GluI GCNGC 1 cut(s) 660
GsuI CTGGAG 1 cut(s) 657
HaeIII GGCC 1 cut(s) 229
Hin1II CATG 3 cut(s) 20, 209, 416
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 353, 518, 572
Hpy166II GTNNAC 3 cut(s) 410, 437, 625
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 3 cut(s) 233, 296, 688
Hpy8I GTNNAC 3 cut(s) 410, 437, 625
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 4 cut(s) 140, 164, 189, 342
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 3 cut(s) 20, 209, 416
Kzo9I GATC 2 cut(s) 377, 605
LmnI GCTCC 2 cut(s) 49, 638
LpnPI CCDG 5 cut(s) 236, 246, 516, 567, 621
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 3 cut(s) 81, 192, 572
MaeI CTAG 2 cut(s) 350, 557
MaeII ACGT 1 cut(s) 439
MalI GATC 2 cut(s) 379, 607
MboI GATC 2 cut(s) 377, 605
MboII GAAGA 3 cut(s) 125, 348, 553
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 2 cut(s) 54, 412
MluCI AATT 7 cut(s) 32, 97, 144, 222, 363, 458, 491
MlyI GAGTC 2 cut(s) 362, 527
MnlI CCTC 5 cut(s) 195, 240, 281, 457, 553
Mph1103I ATGCAT 1 cut(s) 207
MseI TTAA 1 cut(s) 336
MunI CAATTG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeII GATC 2 cut(s) 377, 605
NlaIII CATG 3 cut(s) 20, 209, 416
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 207
PfeI GAWTC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 1 cut(s) 661
PleI GAGTC 2 cut(s) 361, 526
PmaCI CACGTG 1 cut(s) 440
PmlI CACGTG 1 cut(s) 440
PpsI GAGTC 2 cut(s) 361, 526
Ppu21I YACGTR 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
PspCI CACGTG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 155, 181
PspPPI RGGWCCY 1 cut(s) 181
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 2 cut(s) 312, 436
RsaNI GTAC 2 cut(s) 311, 435
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 2 cut(s) 377, 605
Sau96I GGNCC 2 cut(s) 155, 181
SchI GAGTC 2 cut(s) 362, 527
SduI GDGCHC 2 cut(s) 54, 412
SfaNI GCATC 3 cut(s) 81, 192, 572
SinI GGWCC 2 cut(s) 155, 181
SmlI CTYRAG 2 cut(s) 515, 688
SmoI CTYRAG 2 cut(s) 515, 688
Sse9I AATT 7 cut(s) 32, 97, 144, 222, 363, 458, 491
SspMI CTAG 2 cut(s) 350, 557
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 442
TaqI TCGA 2 cut(s) 64, 277
TasI AATT 7 cut(s) 32, 97, 144, 222, 363, 458, 491
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 115, 455
TseI GCWGC 1 cut(s) 659
TspDTI ATGAA 3 cut(s) 24, 137, 429
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 115, 455
Van91I CCANNNNNTGG 1 cut(s) 454
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 2 cut(s) 155, 181
XapI RAATTY 4 cut(s) 32, 97, 144, 222
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 2 cut(s) 350, 557
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.