No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0106841 RchiOBHm_Chr4g0417791 |
| rosa_laevigata | RLG00000013441 |
| rosa_multiflora | Rmu_sc0000751.1_g000031 Rmu_sc0000795.1_g000109 Rmu_sc0006098.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00109800 Rroxscaffold_3G00250690 Rroxscaffold_6G00399130 |
| rosa_rugosa | Rorug03G0363900.1 |
| rosa_samantha | Rh2AG190200 Rh2CG336800 Rh7DG426300 |
| rosa_wichuraiana | Rw1G023970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 462 |
| AcsI | RAATTY | 2 cut(s) | 344, 503 |
| AfaI | GTAC | 1 cut(s) | 71 |
| AgsI | TTSAA | 3 cut(s) | 189, 302, 334 |
| AluBI | AGCT | 4 cut(s) | 49, 226, 452, 540 |
| AluI | AGCT | 4 cut(s) | 49, 226, 452, 540 |
| Alw21I | GWGCWC | 1 cut(s) | 359 |
| ApeKI | GCWGC | 3 cut(s) | 49, 283, 314 |
| ApoI | RAATTY | 2 cut(s) | 344, 503 |
| AseI | ATTAAT | 1 cut(s) | 390 |
| AsuHPI | GGTGA | 2 cut(s) | 302, 397 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 61, 94 |
| Bbv12I | GWGCWC | 1 cut(s) | 359 |
| BbvI | GCAGC | 3 cut(s) | 36, 270, 301 |
| BccI | CCATC | 3 cut(s) | 82, 130, 367 |
| BceAI | ACGGC | 1 cut(s) | 449 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 506, 540 |
| BclI | TGATCA | 1 cut(s) | 205 |
| BfmI | CTRYAG | 1 cut(s) | 564 |
| BisI | GCNGC | 4 cut(s) | 50, 284, 315, 462 |
| BlsI | GCNGC | 4 cut(s) | 51, 285, 316, 463 |
| BmsI | GCATC | 1 cut(s) | 508 |
| BpuEI | CTTGAG | 1 cut(s) | 34 |
| Bse1I | ACTGG | 2 cut(s) | 153, 201 |
| Bse3DI | GCAATG | 2 cut(s) | 321, 429 |
| BseMI | GCAATG | 2 cut(s) | 321, 429 |
| BseNI | ACTGG | 2 cut(s) | 153, 201 |
| BseRI | GAGGAG | 1 cut(s) | 367 |
| BseXI | GCAGC | 3 cut(s) | 36, 270, 301 |
| BsgI | GTGCAG | 2 cut(s) | 300, 440 |
| BsiHKAI | GWGCWC | 1 cut(s) | 359 |
| BslFI | GGGAC | 1 cut(s) | 88 |
| BsmFI | GGGAC | 1 cut(s) | 88 |
| Bsp1286I | GDGCHC | 1 cut(s) | 359 |
| Bsp143I | GATC | 1 cut(s) | 205 |
| BspACI | CCGC | 1 cut(s) | 462 |
| BspHI | TCATGA | 1 cut(s) | 396 |
| BsrDI | GCAATG | 2 cut(s) | 321, 429 |
| BsrI | ACTGG | 2 cut(s) | 153, 201 |
| BssMI | GATC | 1 cut(s) | 205 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 323 |
| BstC8I | GCNNGC | 3 cut(s) | 47, 312, 580 |
| BstKTI | GATC | 1 cut(s) | 208 |
| BstMBI | GATC | 1 cut(s) | 205 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 323, 458 |
| BstNSI | RCATGY | 1 cut(s) | 582 |
| BstSFI | CTRYAG | 1 cut(s) | 564 |
| BstV1I | GCAGC | 3 cut(s) | 36, 270, 301 |
| BtsIMutI | CAGTG | 1 cut(s) | 208 |
| Cac8I | GCNNGC | 3 cut(s) | 47, 312, 580 |
| CciI | TCATGA | 1 cut(s) | 396 |
| Csp6I | GTAC | 1 cut(s) | 70 |
| CviAII | CATG | 6 cut(s) | 241, 397, 479, 524, 571, 579 |
| CviJI | RGCY | 6 cut(s) | 49, 226, 278, 314, 452, 540 |
| CviKI_1 | RGCY | 6 cut(s) | 49, 226, 278, 314, 452, 540 |
| CviQI | GTAC | 1 cut(s) | 70 |
| DpnI | GATC | 1 cut(s) | 207 |
| DpnII | GATC | 1 cut(s) | 205 |
| FaeI | CATG | 6 cut(s) | 244, 400, 482, 527, 574, 582 |
| FaqI | GGGAC | 1 cut(s) | 88 |
| FatI | CATG | 6 cut(s) | 240, 396, 478, 523, 570, 578 |
| FbaI | TGATCA | 1 cut(s) | 205 |
| Fnu4HI | GCNGC | 4 cut(s) | 50, 284, 315, 462 |
| Fsp4HI | GCNGC | 4 cut(s) | 50, 284, 315, 462 |
| GluI | GCNGC | 4 cut(s) | 50, 284, 315, 462 |
| Hin1II | CATG | 6 cut(s) | 244, 400, 482, 527, 574, 582 |
| HphI | GGTGA | 2 cut(s) | 302, 397 |
| Hpy166II | GTNNAC | 4 cut(s) | 142, 154, 235, 514 |
| Hpy188I | TCNGA | 2 cut(s) | 210, 471 |
| Hpy188III | TCNNGA | 1 cut(s) | 397 |
| Hpy8I | GTNNAC | 4 cut(s) | 142, 154, 235, 514 |
| HpyAV | CCTTC | 1 cut(s) | 262 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 45, 52, 60, 310, 317, 421, 527 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 323, 458 |
| Hsp92II | CATG | 6 cut(s) | 244, 400, 482, 527, 574, 582 |
| Ksp22I | TGATCA | 1 cut(s) | 205 |
| Kzo9I | GATC | 1 cut(s) | 205 |
| LmnI | GCTCC | 2 cut(s) | 354, 457 |
| LpnPI | CCDG | 4 cut(s) | 134, 214, 296, 552 |
| Lsp1109I | GCAGC | 3 cut(s) | 36, 270, 301 |
| LweI | GCATC | 1 cut(s) | 508 |
| MalI | GATC | 1 cut(s) | 207 |
| MboI | GATC | 1 cut(s) | 205 |
| MboII | GAAGA | 3 cut(s) | 142, 145, 173 |
| MfeI | CAATTG | 1 cut(s) | 380 |
| MhlI | GDGCHC | 1 cut(s) | 359 |
| MluCI | AATT | 7 cut(s) | 64, 191, 344, 380, 503, 531, 601 |
| MnlI | CCTC | 3 cut(s) | 116, 345, 567 |
| MseI | TTAA | 2 cut(s) | 342, 390 |
| MslI | CAYNNNNRTG | 1 cut(s) | 434 |
| MunI | CAATTG | 1 cut(s) | 380 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 323, 458 |
| NdeII | GATC | 1 cut(s) | 205 |
| NlaIII | CATG | 6 cut(s) | 244, 400, 482, 527, 574, 582 |
| NspI | RCATGY | 1 cut(s) | 582 |
| PaeI | GCATGC | 1 cut(s) | 582 |
| PagI | TCATGA | 1 cut(s) | 396 |
| PkrI | GCNGC | 4 cut(s) | 51, 285, 316, 463 |
| PshBI | ATTAAT | 1 cut(s) | 390 |
| RsaI | GTAC | 1 cut(s) | 71 |
| RsaNI | GTAC | 1 cut(s) | 70 |
| RseI | CAYNNNNRTG | 1 cut(s) | 434 |
| SaqAI | TTAA | 2 cut(s) | 342, 390 |
| SatI | GCNGC | 4 cut(s) | 50, 284, 315, 462 |
| Sau3AI | GATC | 1 cut(s) | 205 |
| SduI | GDGCHC | 1 cut(s) | 359 |
| SetI | ASST | 7 cut(s) | 51, 114, 228, 405, 454, 476, 542 |
| SfaNI | GCATC | 1 cut(s) | 508 |
| SfcI | CTRYAG | 1 cut(s) | 564 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 434 |
| SmlI | CTYRAG | 1 cut(s) | 13 |
| SmoI | CTYRAG | 1 cut(s) | 13 |
| SphI | GCATGC | 1 cut(s) | 582 |
| Sse9I | AATT | 7 cut(s) | 64, 191, 344, 380, 503, 531, 601 |
| SsiI | CCGC | 1 cut(s) | 462 |
| SspI | AATATT | 1 cut(s) | 296 |
| TaqI | TCGA | 1 cut(s) | 412 |
| TasI | AATT | 7 cut(s) | 64, 191, 344, 380, 503, 531, 601 |
| TauI | GCSGC | 1 cut(s) | 464 |
| Tru1I | TTAA | 2 cut(s) | 342, 390 |
| Tru9I | TTAA | 2 cut(s) | 342, 390 |
| TscAI | CASTG | 1 cut(s) | 208 |
| TseI | GCWGC | 3 cut(s) | 49, 283, 314 |
| TspDTI | ATGAA | 4 cut(s) | 143, 174, 281, 413 |
| TspRI | CASTG | 1 cut(s) | 208 |
| VspI | ATTAAT | 1 cut(s) | 390 |
| XapI | RAATTY | 2 cut(s) | 344, 503 |
| XceI | RCATGY | 1 cut(s) | 582 |