Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016981

Physical Location & Seq

Genomic Coordinates Forward (+)

21044114 .. 21045191

Gene Structure 1078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTGGCCTCAAATGTTATACATGCCTTGATGTATGGAGAGGGATTCATTATTGAGTTTTTTGAGAAACCAAAAGACAGGAAACTTGAAGCTTTGATAGATGCTACTATCAATTCGAGAATTGATGATCTGAACACACAAGAGACACCTTACCTTGCCACTGTGGATATTTATGTTCTATATAGGAAAGTGATGGTTCATATGCTTCAAGTGAAGTTCTCAAAAGTTGCAGTTGTTCAGGGCACAGCCTATATAAGACCGAGAGTTAAAGCTTACATGGTTGGTGGCTGTTATAAAGACATTGCTCACACTTGGTTGTCAAAATTTCCAGCAGTTCAATTTTGCAATTTAAGTGATGATGCACATACACTAGGCCTGCTACTGATTGACCGAGCTAGTGCATTTCTTTTGCTTAAAGAACTTGAGTTAGTTATTCTAGAGAACGGAGGTGTAGAAAATGTGCACACATGGGGTTGGTACAAACTCCAGATTGTAGTAGATGCTACAATGGGAGCTGATTACTTTTTGCAAGCTGCAACTCTGCAAGAATTGGTACAAGTTTCCGGTGATCGGTTTTCTATATATAAGCTCTTAGTTGACATCCTGCTTAGTAGTCTTGCTTGTCTTATTAAGGCTTTGGCTTTGCTTCTTGGTGAATATTTTGATATGCTGCAGGCTGCACCCATTGCTTCCTTGACAATTGTACAATTTGTGAGGAGCACCCTAACAATGGTGATGATACAGTTAGTGATTACTGTCATGAACTCATCATTTCTATTTGTGAAGAGGATCATTGCTACGGCTGCATATTCAGCTCCGCTTGCGCCTTCCGGACTTTACATGACAACTATACTTCTATTGCGAAAGTTGGTGTTGACAATGCTCATGGAGAAGTTGGTAGTTCTCTCTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

305

Amino Acids

34.16

Weight (kDa)

6.96

Isoelectric Point (pI)

24.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106841 RchiOBHm_Chr4g0417791
rosa_laevigata	RLG00000013441
rosa_multiflora	Rmu_sc0000751.1_g000031 Rmu_sc0000795.1_g000109 Rmu_sc0006098.1_g000003
rosa_roxburghii	Rroxscaffold_2G00109800 Rroxscaffold_3G00250690 Rroxscaffold_6G00399130
rosa_rugosa	Rorug03G0363900.1
rosa_samantha	Rh2AG190200 Rh2CG336800 Rh7DG426300
rosa_wichuraiana	Rw1G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	830
AciI	CCGC	1 cut(s)	818
AclWI	GGATC	1 cut(s)	797
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	3 cut(s)	479, 555, 705
AfiI	CCNNNNNNNGG	2 cut(s)	570, 730
AgsI	TTSAA	3 cut(s)	89, 209, 338
AluBI	AGCT	7 cut(s)	92, 272, 395, 515, 533, 589, 815
AluI	AGCT	7 cut(s)	92, 272, 395, 515, 533, 589, 815
Alw21I	GWGCWC	2 cut(s)	465, 722
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	797
Aor13HI	TCCGGA	1 cut(s)	830
AoxI	GGCC	2 cut(s)	6, 373
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	4 cut(s)	533, 670, 677, 803
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	826
AsuHPI	GGTGA	3 cut(s)	578, 665, 745
BaeGI	GKGCMC	2 cut(s)	245, 465
Bbv12I	GWGCWC	2 cut(s)	465, 722
BbvI	GCAGC	4 cut(s)	520, 657, 664, 790
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	816
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	4 cut(s)	371, 396, 437, 916
BfmI	CTRYAG	1 cut(s)	671
BisI	GCNGC	4 cut(s)	534, 671, 678, 804
BlsI	GCNGC	4 cut(s)	535, 672, 679, 805
BmsI	GCATC	3 cut(s)	91, 349, 490
BpmI	CTGGAG	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	443
BsaWI	WCCGGW	2 cut(s)	563, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	570, 730
Bse3DI	GCAATG	3 cut(s)	300, 684, 792
BseAI	TCCGGA	1 cut(s)	830
BseGI	GGATG	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	570, 730
BseMI	GCAATG	3 cut(s)	300, 684, 792
BseRI	GAGGAG	1 cut(s)	730
BseSI	GKGCMC	2 cut(s)	245, 465
BseXI	GCAGC	4 cut(s)	520, 657, 664, 790
BsgI	GTGCAG	1 cut(s)	663
BshFI	GGCC	2 cut(s)	8, 375
BsiHKAI	GWGCWC	2 cut(s)	465, 722
BsiSI	CCGG	2 cut(s)	564, 831
BslI	CCNNNNNNNGG	2 cut(s)	570, 730
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	8, 375
Bsp1286I	GDGCHC	3 cut(s)	245, 465, 722
Bsp13I	TCCGGA	1 cut(s)	830
Bsp1407I	TGTACA	1 cut(s)	703
Bsp143I	GATC	3 cut(s)	127, 568, 789
BspACI	CCGC	1 cut(s)	818
BspANI	GGCC	2 cut(s)	8, 375
BspEI	TCCGGA	1 cut(s)	830
BspHI	TCATGA	1 cut(s)	759
BspMAI	CTGCAG	1 cut(s)	675
BspPI	GGATC	1 cut(s)	797
BsrDI	GCAATG	3 cut(s)	300, 684, 792
BsrGI	TGTACA	1 cut(s)	703
BssMI	GATC	3 cut(s)	127, 568, 789
Bst4CI	ACNGT	3 cut(s)	163, 744, 757
Bst6I	CTCTTC	1 cut(s)	779
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	703
BstC8I	GCNNGC	5 cut(s)	6, 377, 531, 675, 822
BstDEI	CTNAG	2 cut(s)	592, 608
BstF5I	GGATG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	3 cut(s)	130, 571, 792
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	127, 568, 789
BstMWI	GCNNNNNNNGC	4 cut(s)	686, 803, 812, 821
BstNSI	RCATGY	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	671
BstSLI	GKGCMC	2 cut(s)	245, 465
BstV1I	GCAGC	4 cut(s)	520, 657, 664, 790
BsuRI	GGCC	2 cut(s)	8, 375
BtsCI	GGATG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	5 cut(s)	6, 377, 531, 675, 822
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	1 cut(s)	826
Csp6I	GTAC	3 cut(s)	478, 554, 704
CviAII	CATG	6 cut(s)	23, 277, 468, 760, 841, 886
CviQI	GTAC	3 cut(s)	478, 554, 704
DdeI	CTNAG	2 cut(s)	592, 608
DpnI	GATC	3 cut(s)	129, 570, 791
DpnII	GATC	3 cut(s)	127, 568, 789
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
Eco147I	AGGCCT	1 cut(s)	375
FaeI	CATG	6 cut(s)	26, 280, 471, 763, 844, 889
FatI	CATG	6 cut(s)	22, 276, 467, 759, 840, 885
FauNDI	CATATG	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	534, 671, 678, 804
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	4 cut(s)	534, 671, 678, 804
FspBI	CTAG	4 cut(s)	371, 396, 437, 916
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	4 cut(s)	534, 671, 678, 804
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	8, 375
HapII	CCGG	2 cut(s)	564, 831
HhaI	GCGC	1 cut(s)	826
Hin1II	CATG	6 cut(s)	26, 280, 471, 763, 844, 889
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HincII	GTYRAC	2 cut(s)	598, 876
HindII	GTYRAC	2 cut(s)	598, 876
HindIII	AAGCTT	2 cut(s)	90, 270
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	564, 831
HphI	GGTGA	3 cut(s)	578, 665, 745
Hpy166II	GTNNAC	3 cut(s)	463, 598, 876
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	5 cut(s)	117, 437, 487, 760, 831
Hpy8I	GTNNAC	3 cut(s)	463, 598, 876
HpyAV	CCTTC	1 cut(s)	837
HpyCH4III	ACNGT	3 cut(s)	163, 744, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	686, 803, 812, 821
HpyF3I	CTNAG	2 cut(s)	592, 608
Hsp92II	CATG	6 cut(s)	26, 280, 471, 763, 844, 889
HspAI	GCGC	1 cut(s)	824
Kpn2I	TCCGGA	1 cut(s)	830
Kzo9I	GATC	3 cut(s)	127, 568, 789
LmnI	GCTCC	3 cut(s)	512, 717, 820
LpnPI	CCDG	9 cut(s)	64, 224, 342, 389, 500, 577, 617, 659, 844
Lsp1109I	GCAGC	4 cut(s)	520, 657, 664, 790
LweI	GCATC	3 cut(s)	91, 349, 490
MaeI	CTAG	4 cut(s)	371, 396, 437, 916
MalI	GATC	3 cut(s)	129, 570, 791
MboI	GATC	3 cut(s)	127, 568, 789
MboII	GAAGA	1 cut(s)	796
MfeI	CAATTG	1 cut(s)	699
MhlI	GDGCHC	3 cut(s)	245, 465, 722
MluCI	AATT	8 cut(s)	112, 120, 323, 338, 346, 548, 699, 707
MnlI	CCTC	5 cut(s)	19, 34, 440, 708, 780
MroI	TCCGGA	1 cut(s)	830
MseI	TTAA	4 cut(s)	267, 350, 414, 630
MspI	CCGG	2 cut(s)	564, 831
MunI	CAATTG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	686, 803, 812, 821
NdeI	CATATG	1 cut(s)	201
NdeII	GATC	3 cut(s)	127, 568, 789
NlaIII	CATG	6 cut(s)	26, 280, 471, 763, 844, 889
NspI	RCATGY	1 cut(s)	26
PagI	TCATGA	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	535, 672, 679, 805
PsiI	TTATAA	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	675
RsaI	GTAC	3 cut(s)	479, 555, 705
RsaNI	GTAC	3 cut(s)	478, 554, 704
SaqAI	TTAA	4 cut(s)	267, 350, 414, 630
SatI	GCNGC	4 cut(s)	534, 671, 678, 804
Sau3AI	GATC	3 cut(s)	127, 568, 789
SduI	GDGCHC	3 cut(s)	245, 465, 722
SfaNI	GCATC	3 cut(s)	91, 349, 490
SfcI	CTRYAG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	8 cut(s)	112, 120, 323, 338, 346, 548, 699, 707
SseBI	AGGCCT	1 cut(s)	375
SsiI	CCGC	1 cut(s)	818
SspI	AATATT	1 cut(s)	659
SspMI	CTAG	4 cut(s)	371, 396, 437, 916
StuI	AGGCCT	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	163, 744, 757
TaqI	TCGA	1 cut(s)	116
TaqII	GACCGA	2 cut(s)	274, 405
TasI	AATT	8 cut(s)	112, 120, 323, 338, 346, 548, 699, 707
TatI	WGTACW	1 cut(s)	703
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	4 cut(s)	267, 350, 414, 630
Tru9I	TTAA	4 cut(s)	267, 350, 414, 630
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	4 cut(s)	533, 670, 677, 803
TspDTI	ATGAA	3 cut(s)	37, 188, 776
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	323
XbaI	TCTAGA	1 cut(s)	436
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	4 cut(s)	371, 396, 437, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.