RchiOBHm_Chr4g0418931

mitogen-activated protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
44422154 .. 44427731
5578 bp
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UTR
Exon/CDS
Intron
PRQ38887

Sequence Viewer

Length: 1686 bp
ATGCAGCCTGATCAAAGAAAAAAGTCTGTGGATGTGGACTTCTTCACTGAATATGGTGAGGGAAGTAGGTATAAAATAGAGGAAGTAATTGGCAAAGGAAGCTATGGAGTTGTTTGTTCTGCATTTGATACGCATACTGGAGAAAAGGTAGCTATCAAGAAAATAAATGATATTTTTGAACATGTCTCGGATGCCACCCGCATCCTTCGTGAGATTAAACTTCTTAGGCTCCTGCGTCATCCAGACATTGTGGAGATCAAGCACATTTTGTTACCTCCATCCAGAAGGGAATTCAAAGACATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTTATTAAAGCAAATGATGATTTGACACCAGAACATTATCAGTTCTTTCTTTATCAGCTTCTCCGAGGAATGAAGTACATACACACAGCAAATGTTTTTCACCGAGATCTAAAACCCAAAAACATCTTGGCAAATGCCGACTGCAAACTGAAGATCTGCGACTTTGGTCTTGCTAGAGTAGCTTTCAATGATACTCCCACAGCTATATTTTGGACGGACTATGTTGCCACAAGATGGTACAGGGCTCCTGAGTTGTGTGGATCATTTTTCTCAAAGTATACACCTGCAATAGATATCTGGAGCATTGGGTGCATCTTTGCAGAGCTTTTAACTGGAAAGCCTCTTTTTCCGGGCAAAAATGTTGTCCATCAGTTGGACCTCATGACTGATTTATTGGGAACACCATCTGCTGAAGCAATTGCTAGGGTACGCAATGAGAAGGCTCGCAGATACTTAAGCAGTATGAGAAAGAAGAGGCAGATTCCTTTTTCCCAGAAATTCCCAAATGCAGACCCACTTGCTCTACGTTTATTAGAAAGAATGTTAGCTTTTGAACCGAAGGATAGACCTACTGCTGAAGAGGCTCTTGCTGATCCCTATTTCAAGGGTTTGGCAAAAGTGGAGAGAGAACCTTCGGCTCAACCAGTTACCAAGATGGAATTTGAGTTTGAGAGGCGAAGGATAACCAAAGAAGATGTTAGAGAGCTTATTTATCGTGAGACTCTCGAGTATCATCCTAAGATGTTGAAAGAGTACTTAGACGGATCAGAGCCAACAGGATTCATGTATCCAAGTGCTGTTGACCATTTCAAGAAGCAATTTGCATATCTTGAGGAGCACTATGGAAATGGCACAGTTGGTGCTGCACCTGAGAGGCAACATGCATCACTACCCAGGGCATGTGTTTCGTATACCAATAACTCAGTGCAGCAACCAACAGAAGTCACAGAAGACCTTGCAAAATGCTGCATCAAAGAAATTGAGAAGCCAGTGGACAGGAACTGCGGAATCCCTACAACAAAGCCTCCAATTCAAGCTCCTCAGACCATCCAAGGAGCTGCAAGGCCTGGCAAAGTTGTTGGCTCAGTGTTACGTTTTAATAATTGCGGGGCAGCAGCTGCAGCAGAGACTCTTGAGCAGCGAAGGATGGTTAGGAATCCAGTTGTTCCAACTCAATATACGGCTGCCGCAGGCTCTTCATATCCTAGAAGAAATGCATCCTGCAAAAATGAGAGGGAAGACAATGAAGTGGAAGGTTCAAATGGGTTGCTGCCAAAGCCCCCTCAATACATTCCAAGGAAAGTTGCTGCTGCACAAGGTGGATCTGGAAGTCAATGGTATTGA

Protein Analysis

561

Amino Acids

63.76

Weight (kDa)

8.73

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 24 - 315 4.7e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 25 - 254 1.6e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014907)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 634
AccB7I CCANNNNNTGG 2 cut(s) 576, 715
AccI GTMKAC 2 cut(s) 620, 1253
AciI CCGC 4 cut(s) 199, 1347, 1449, 1530
AclWI GGATC 4 cut(s) 610, 929, 1114, 1672
AcsI RAATTY 3 cut(s) 290, 839, 1001
AcuI CTGAAG 3 cut(s) 512, 774, 939
AdeI CACNNNGTG 1 cut(s) 1661
AfaI GTAC 4 cut(s) 419, 581, 771, 1097
AfiI CCNNNNNNNGG 2 cut(s) 576, 715
AflII CTTAAG 1 cut(s) 796
AflIII ACRYGT 1 cut(s) 181
AjnI CCWGG 2 cut(s) 1235, 1408
Alw21I GWGCWC 1 cut(s) 1182
Alw26I GTCTC 3 cut(s) 190, 1055, 1463
AlwI GGATC 4 cut(s) 610, 929, 1114, 1672
AlwNI CAGNNNCTG 2 cut(s) 1344, 1460
Ama87I CYCGRG 1 cut(s) 1067
AoxI GGCC 1 cut(s) 1406
ApoI RAATTY 3 cut(s) 290, 839, 1001
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AspS9I GGNCC 1 cut(s) 718
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 68, 434
AvaI CYCGRG 1 cut(s) 1067
AvaII GGWCC 1 cut(s) 718
BanII GRGCYC 1 cut(s) 589
BbsI GAAGAC 2 cut(s) 1299, 1587
Bbv12I GWGCWC 1 cut(s) 1182
BccI CCATC 7 cut(s) 286, 570, 717, 754, 991, 1397, 1483
BceAI ACGGC 1 cut(s) 1539
BcgI CGANNNNNNTGC 2 cut(s) 1230, 1264
BciT130I CCWGG 2 cut(s) 1237, 1410
BciVI GTATCC 1 cut(s) 1140
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 3 cut(s) 190, 1055, 1463
BfaI CTAG 3 cut(s) 516, 765, 1548
BfmI CTRYAG 1 cut(s) 1461
BfrI CTTAAG 1 cut(s) 796
BfuAI ACCTGC 1 cut(s) 634
BfuI GTATCC 1 cut(s) 1140
BglII AGATCT 2 cut(s) 448, 495
BmcAI AGTACT 1 cut(s) 1097
Bme1390I CCNGG 3 cut(s) 693, 1237, 1410
Bme18I GGWCC 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 1067
BmgT120I GGNCC 1 cut(s) 718
BmiI GGNNCC 2 cut(s) 230, 588
BmrFI CCNGG 3 cut(s) 693, 1237, 1410
BmsI GCATC 6 cut(s) 181, 210, 663, 1235, 1320, 1568
BoxI GACNNNNGTC 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 1299, 1587
BpmI CTGGAG 2 cut(s) 159, 661
BpuEI CTTGAG 2 cut(s) 1193, 1496
BpuMI CCSGG 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 5 cut(s) 406, 1235, 1236, 1393, 1637
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 1351, 1381
Bsc4I CCNNNNNNNGG 2 cut(s) 576, 715
Bse1I ACTGG 5 cut(s) 142, 679, 986, 1331, 1502
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 2 cut(s) 1237, 1410
BseDI CCNNGG 5 cut(s) 406, 1235, 1236, 1393, 1637
BseGI GGATG 9 cut(s) 37, 196, 201, 238, 278, 1075, 1389, 1494, 1559
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 576, 715
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 5 cut(s) 582, 1203, 1278, 1397, 1440
BseNI ACTGG 5 cut(s) 142, 679, 986, 1331, 1502
BseRI GAGGAG 2 cut(s) 1190, 1371
BsgI GTGCAG 3 cut(s) 1191, 1289, 1638
BshFI GGCC 1 cut(s) 1408
BsiHKAI GWGCWC 1 cut(s) 1182
BsiHKCI CYCGRG 1 cut(s) 1067
BsiSI CCGG 1 cut(s) 692
BslI CCNNNNNNNGG 2 cut(s) 576, 715
BsmAI GTCTC 3 cut(s) 190, 1055, 1463
BsnI GGCC 1 cut(s) 1408
BsoBI CYCGRG 1 cut(s) 1067
Bsp1286I GDGCHC 2 cut(s) 589, 1182
Bsp143I GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
BspACI CCGC 4 cut(s) 199, 1347, 1449, 1530
BspANI GGCC 1 cut(s) 1408
BspCNI CTCAG 5 cut(s) 583, 1204, 1277, 1396, 1439
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 230, 588
BspMAI CTGCAG 1 cut(s) 1465
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 4 cut(s) 610, 929, 1114, 1672
BspQI GCTCTTC 1 cut(s) 1543
BspTI CTTAAG 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 5 cut(s) 142, 679, 986, 1331, 1502
BssECI CCNNGG 5 cut(s) 406, 1235, 1236, 1393, 1637
BssMI GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
BssNAI GTATAC 2 cut(s) 621, 1254
BssT1I CCWWGG 2 cut(s) 1393, 1637
Bst1107I GTATAC 2 cut(s) 621, 1254
Bst2UI CCWGG 2 cut(s) 1237, 1410
Bst4CI ACNGT 1 cut(s) 1198
Bst6I CTCTTC 3 cut(s) 809, 915, 1543
BstAFI CTTAAG 1 cut(s) 796
BstAPI GCANNNNNTGC 2 cut(s) 651, 1460
BstC8I GCNNGC 2 cut(s) 787, 1534
BstDEI CTNAG 8 cut(s) 224, 591, 1080, 1099, 1212, 1264, 1383, 1426
BstF5I GGATG 9 cut(s) 37, 196, 201, 238, 278, 1075, 1389, 1494, 1559
BstKTI GATC 8 cut(s) 13, 258, 451, 498, 605, 937, 1109, 1667
BstMAI GTCTC 3 cut(s) 190, 1055, 1463
BstMBI GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
BstMWI GCNNNNNNNGC 7 cut(s) 99, 521, 651, 923, 1460, 1463, 1618
BstNI CCWGG 2 cut(s) 1237, 1410
BstNSI RCATGY 3 cut(s) 185, 1226, 1245
BstPAI GACNNNNGTC 1 cut(s) 507
BstSCI CCNGG 3 cut(s) 691, 1235, 1408
BstSFI CTRYAG 1 cut(s) 1461
BstV2I GAAGAC 2 cut(s) 1299, 1587
BstX2I RGATCY 3 cut(s) 448, 495, 1664
BstYI RGATCY 3 cut(s) 448, 495, 1664
BstZ17I GTATAC 2 cut(s) 621, 1254
BsuI GTATCC 1 cut(s) 1140
BsuRI GGCC 1 cut(s) 1408
BtsCI GGATG 9 cut(s) 37, 196, 201, 238, 278, 1075, 1389, 1494, 1559
BtsIMutI CAGTG 4 cut(s) 45, 1272, 1338, 1434
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 2 cut(s) 787, 1534
CaiI CAGNNNCTG 2 cut(s) 1344, 1460
CciI TCATGA 1 cut(s) 723
Cfr13I GGNCC 1 cut(s) 718
CseI GACGC 1 cut(s) 224
Csp6I GTAC 4 cut(s) 418, 580, 770, 1096
CviAII CATG 6 cut(s) 182, 322, 724, 1126, 1223, 1242
CviQI GTAC 4 cut(s) 418, 580, 770, 1096
DdeI CTNAG 8 cut(s) 224, 591, 1080, 1099, 1212, 1264, 1383, 1426
DpnI GATC 8 cut(s) 12, 257, 450, 497, 604, 936, 1108, 1666
DpnII GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
DraIII CACNNNGTG 1 cut(s) 1661
Eam1104I CTCTTC 3 cut(s) 809, 915, 1543
EarI CTCTTC 3 cut(s) 809, 915, 1543
Eco130I CCWWGG 2 cut(s) 1393, 1637
Eco147I AGGCCT 1 cut(s) 1408
Eco24I GRGCYC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 718
Eco57I CTGAAG 3 cut(s) 512, 774, 939
Eco88I CYCGRG 1 cut(s) 1067
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 1235, 1408
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 1393, 1637
EcoT22I ATGCAT 2 cut(s) 1228, 1561
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 2 cut(s) 1393, 1637
FaeI CATG 6 cut(s) 185, 325, 727, 1129, 1226, 1245
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 6 cut(s) 181, 321, 723, 1125, 1222, 1241
FauI CCCGC 2 cut(s) 206, 1442
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 2 cut(s) 620, 1253
FokI GGATG 9 cut(s) 44, 188, 203, 225, 265, 1062, 1376, 1501, 1546
FriOI GRGCYC 1 cut(s) 589
FspBI CTAG 3 cut(s) 516, 765, 1548
GsuI CTGGAG 2 cut(s) 159, 661
HaeIII GGCC 1 cut(s) 1408
HapII CCGG 1 cut(s) 692
HgaI GACGC 1 cut(s) 224
Hin1II CATG 6 cut(s) 185, 325, 727, 1129, 1226, 1245
HincII GTYRAC 1 cut(s) 1144
HindII GTYRAC 1 cut(s) 1144
HinfI GANTC 7 cut(s) 326, 823, 1063, 1122, 1350, 1471, 1498
HpaII CCGG 1 cut(s) 692
HphI GGTGA 2 cut(s) 68, 434
Hpy166II GTNNAC 5 cut(s) 37, 621, 1144, 1254, 1336
Hpy188I TCNGA 5 cut(s) 190, 331, 407, 1111, 1386
Hpy8I GTNNAC 5 cut(s) 37, 621, 1144, 1254, 1336
HpyAV CCTTC 8 cut(s) 215, 279, 775, 895, 984, 1014, 1479, 1589
HpyCH4III ACNGT 1 cut(s) 1198
HpyCH4IV ACGT 2 cut(s) 868, 1435
HpyF10VI GCNNNNNNNGC 7 cut(s) 99, 521, 651, 923, 1460, 1463, 1618
HpyF3I CTNAG 8 cut(s) 224, 591, 1080, 1099, 1212, 1264, 1383, 1426
HpySE526I ACGT 2 cut(s) 868, 1435
Hsp92II CATG 6 cut(s) 185, 325, 727, 1129, 1226, 1245
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
LguI GCTCTTC 1 cut(s) 1543
LmnI GCTCC 6 cut(s) 234, 592, 642, 1177, 1384, 1397
LweI GCATC 6 cut(s) 181, 210, 663, 1235, 1320, 1568
MaeI CTAG 3 cut(s) 516, 765, 1548
MaeII ACGT 2 cut(s) 868, 1435
MaeIII GTNAC 4 cut(s) 270, 988, 1285, 1431
MalI GATC 8 cut(s) 12, 257, 450, 497, 604, 936, 1108, 1666
MboI GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
MboII GAAGA 9 cut(s) 34, 505, 826, 932, 1046, 1304, 1530, 1563, 1592
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 3 cut(s) 448, 495, 1664
MhlI GDGCHC 2 cut(s) 589, 1182
MluCI AATT 9 cut(s) 87, 290, 759, 839, 1001, 1160, 1320, 1371, 1444
MlyI GAGTC 2 cut(s) 1057, 1465
MmeI TCCRAC 2 cut(s) 696, 1535
Mph1103I ATGCAT 2 cut(s) 1228, 1561
MseI TTAA 5 cut(s) 216, 348, 671, 797, 1440
MspA1I CMGCKG 1 cut(s) 1460
MspCI CTTAAG 1 cut(s) 796
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 3 cut(s) 693, 1237, 1410
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 2 cut(s) 1237, 1410
MwoI GCNNNNNNNGC 7 cut(s) 99, 521, 651, 923, 1460, 1463, 1618
NciI CCSGG 1 cut(s) 693
NdeII GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
NlaIII CATG 6 cut(s) 185, 325, 727, 1129, 1226, 1245
NlaIV GGNNCC 2 cut(s) 230, 588
NmuCI GTSAC 1 cut(s) 1285
NsiI ATGCAT 2 cut(s) 1228, 1561
NspI RCATGY 3 cut(s) 185, 1226, 1245
PaeR7I CTCGAG 1 cut(s) 1067
PagI TCATGA 1 cut(s) 723
PaqCI CACCTGC 1 cut(s) 634
PasI CCCWGGG 1 cut(s) 1236
PceI AGGCCT 1 cut(s) 1408
PciI ACATGT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 1543
PfeI GAWTC 5 cut(s) 326, 823, 1122, 1350, 1498
PflMI CCANNNNNTGG 2 cut(s) 576, 715
PleI GAGTC 2 cut(s) 1057, 1465
PpsI GAGTC 2 cut(s) 1057, 1465
PscI ACATGT 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 1235, 1408
PspGI CCWGG 2 cut(s) 1235, 1408
PspN4I GGNNCC 2 cut(s) 230, 588
PspPI GGNCC 1 cut(s) 718
PstI CTGCAG 1 cut(s) 1465
PstNI CAGNNNCTG 2 cut(s) 1344, 1460
PsuI RGATCY 3 cut(s) 448, 495, 1664
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 4 cut(s) 419, 581, 771, 1097
RsaNI GTAC 4 cut(s) 418, 580, 770, 1096
SapI GCTCTTC 1 cut(s) 1543
SaqAI TTAA 5 cut(s) 216, 348, 671, 797, 1440
Sau3AI GATC 8 cut(s) 10, 255, 448, 495, 602, 934, 1106, 1664
Sau96I GGNCC 1 cut(s) 718
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 2 cut(s) 1057, 1465
ScrFI CCNGG 3 cut(s) 693, 1237, 1410
SduI GDGCHC 2 cut(s) 589, 1182
SfaNI GCATC 6 cut(s) 181, 210, 663, 1235, 1320, 1568
SfcI CTRYAG 1 cut(s) 1461
Sfr274I CTCGAG 1 cut(s) 1067
SinI GGWCC 1 cut(s) 718
SlaI CTCGAG 1 cut(s) 1067
SmlI CTYRAG 4 cut(s) 796, 1067, 1172, 1475
SmoI CTYRAG 4 cut(s) 796, 1067, 1172, 1475
Sse9I AATT 9 cut(s) 87, 290, 759, 839, 1001, 1160, 1320, 1371, 1444
SseBI AGGCCT 1 cut(s) 1408
SsiI CCGC 4 cut(s) 199, 1347, 1449, 1530
SspMI CTAG 3 cut(s) 516, 765, 1548
StuI AGGCCT 1 cut(s) 1408
StyD4I CCNGG 3 cut(s) 691, 1235, 1408
StyI CCWWGG 2 cut(s) 1393, 1637
TaaI ACNGT 1 cut(s) 1198
TaiI ACGT 2 cut(s) 871, 1438
TaqI TCGA 1 cut(s) 1068
TasI AATT 9 cut(s) 87, 290, 759, 839, 1001, 1160, 1320, 1371, 1444
TatI WGTACW 2 cut(s) 417, 1095
TauI GCSGC 1 cut(s) 1532
TfiI GAWTC 5 cut(s) 326, 823, 1122, 1350, 1498
Tru1I TTAA 5 cut(s) 216, 348, 671, 797, 1440
Tru9I TTAA 5 cut(s) 216, 348, 671, 797, 1440
TscAI CASTG 4 cut(s) 52, 1272, 1338, 1434
TseFI GTSAC 1 cut(s) 1285
Tsp45I GTSAC 1 cut(s) 1285
TspDTI ATGAA 4 cut(s) 428, 1114, 1530, 1602
TspGWI ACGGA 2 cut(s) 572, 1119
TspRI CASTG 4 cut(s) 52, 1272, 1338, 1434
Van91I CCANNNNNTGG 2 cut(s) 576, 715
Vha464I CTTAAG 1 cut(s) 796
VpaK11BI GGWCC 1 cut(s) 718
XapI RAATTY 3 cut(s) 290, 839, 1001
XceI RCATGY 3 cut(s) 185, 1226, 1245
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 1067
XmiI GTMKAC 2 cut(s) 620, 1253
XspI CTAG 3 cut(s) 516, 765, 1548
ZrmI AGTACT 1 cut(s) 1097
Zsp2I ATGCAT 2 cut(s) 1228, 1561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.