Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014907

Physical Location & Seq

Genomic Coordinates Forward (+)

41571803 .. 41574034

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG215900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGACTGATTTATTGGGAACACCATCTGCTGAAGCAATTGCTAGGGTACGCAATGAGAAGGCTCGCAGATACTTAAGCAGTATGAGAAAGAAGAGGCAGATTCCTTTTTCCCAGAAATTCCCAAATGCAGACCCACTTGCTCTACGTTTATTAGAAAGAATGTTAGCTTTTGAACCGAAGGATAGACCTACTGCTGAAGAGGCTCTTGCTGATCCCTATTTCAAGGGTTTGGCAAAAGTGGAGAGAGAACCTTCGGCTCAACCAGTTACCAAGATGGAATTTGAGTTTGAGAGGCGAAGGATAACCAAAGAAGATGTTAGAGAGCTTATTTATCGTGAGACTCTCGAGTATCATCCTAAGATGTTGAAGGAGTACTTAGACGGATCAGAGCCAACAGGATTCATGTATCCAAGTGCTGTTGACCATTTCAAGAAGCAATTTGCATATCTTGAGGAGCACTATGGAAATGGCACAGTTGGTGCTGCACCTGAGAGGCAACATGCATCACTACCCAGGGCATGTGTTTCGTATACCAATAACTCAGTGCAGCAACCAACAGAAGTCACTGAAGACCTTGCAAAATGCTGCATCAAAGAAATTGAGAAGCCAGTGGACAGGAACTGCGGAATCCCTACAACAAAGCCTCCAATTCAAGCTCCTCAGACCACCCAAGGAGCTGCAAGGCCTGGCAAAGTTGTTGGCTCAGTGTTACGTTTTAATAATTGCGGGGCAGCAGCTGCAGCAGAGACTCTTGAGCAGCGAAGGATGGTTAGGAATCCGGTTGTTCCAACTCAATATACGGCTGCCGCAGGCTCTTCATATCCTAGAAGAAATGCATCCTGCAAAAATGAGAGGGAAGACAATGAAGTAGAAGGTTCAAATGGGTTGCTGCCAAAGCCCCCTCAATACATTCCAAGGAAAGTTGCGGCTGCACAAGGTGGATCTGGAAGTCAATGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

320

Amino Acids

35.86

Weight (kDa)

9.09

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19010
fragaria_vesca	FvH4_4g14280
malus_domestica	MD13G1181100.v1.1 MD16G1181800.v1.1
prunus_persica	Prupe.1G149300_v2.0.a1 Prupe.1G149300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0418931
rosa_laevigata	RLG00000007841
rosa_multiflora	Rmu_sc0000935.1_g000048
rosa_roxburghii	Rroxscaffold_5G00362010
rosa_rugosa	Rorug04G0155100
rosa_samantha	Rh4AG217000 Rh4BG213200 Rh4CG228800 Rh4DG215900
rosa_wichuraiana	Rw4G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	530
AciI	CCGC	4 cut(s)	624, 726, 807, 926
AclWI	GGATC	3 cut(s)	206, 391, 949
AcsI	RAATTY	2 cut(s)	116, 278
AcuI	CTGAAG	3 cut(s)	51, 216, 588
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	2 cut(s)	48, 374
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	173, 223, 367, 430, 653, 879
AjnI	CCWGG	2 cut(s)	512, 685
AluBI	AGCT	5 cut(s)	167, 325, 656, 677, 737
AluI	AGCT	5 cut(s)	167, 325, 656, 677, 737
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	332, 740
AlwI	GGATC	3 cut(s)	206, 391, 949
AlwNI	CAGNNNCTG	2 cut(s)	621, 737
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	683
ApoI	RAATTY	2 cut(s)	116, 278
AvaI	CYCGRG	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	576, 864
Bbv12I	GWGCWC	1 cut(s)	459
BccI	CCATC	3 cut(s)	31, 268, 760
BceAI	ACGGC	1 cut(s)	816
BcgI	CGANNNNNNTGC	2 cut(s)	507, 541
BciT130I	CCWGG	2 cut(s)	514, 687
BciVI	GTATCC	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	332, 740
BfaI	CTAG	2 cut(s)	42, 825
BfmI	CTRYAG	1 cut(s)	738
BfrI	CTTAAG	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	417
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	2 cut(s)	514, 687
BmeT110I	CYCGRG	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	514, 687
BmsI	GCATC	3 cut(s)	512, 597, 845
BpiI	GAAGAC	2 cut(s)	576, 864
BpuEI	CTTGAG	2 cut(s)	470, 773
BsaJI	CCNNGG	4 cut(s)	512, 513, 670, 914
BsaWI	WCCGGW	1 cut(s)	778
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bse1I	ACTGG	2 cut(s)	263, 608
Bse3DI	GCAATG	1 cut(s)	58
BseBI	CCWGG	2 cut(s)	514, 687
BseDI	CCNNGG	4 cut(s)	512, 513, 670, 914
BseGI	GGATG	3 cut(s)	352, 771, 836
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	4 cut(s)	480, 555, 674, 717
BseNI	ACTGG	2 cut(s)	263, 608
BseRI	GAGGAG	2 cut(s)	467, 648
BsgI	GTGCAG	3 cut(s)	468, 566, 915
BshFI	GGCC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	779
BsmAI	GTCTC	2 cut(s)	332, 740
BsnI	GGCC	1 cut(s)	685
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	211, 383, 941
BspACI	CCGC	4 cut(s)	624, 726, 807, 926
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	4 cut(s)	481, 554, 673, 716
BspMAI	CTGCAG	1 cut(s)	742
BspPI	GGATC	3 cut(s)	206, 391, 949
BspQI	GCTCTTC	1 cut(s)	820
BspTI	CTTAAG	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	263, 608
BssECI	CCNNGG	4 cut(s)	512, 513, 670, 914
BssMI	GATC	3 cut(s)	211, 383, 941
BssNAI	GTATAC	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	670, 914
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	514, 687
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	3 cut(s)	86, 192, 820
BstAFI	CTTAAG	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	64, 811
BstDEI	CTNAG	6 cut(s)	357, 376, 489, 541, 660, 703
BstF5I	GGATG	3 cut(s)	352, 771, 836
BstKTI	GATC	3 cut(s)	214, 386, 944
BstMAI	GTCTC	2 cut(s)	332, 740
BstMBI	GATC	3 cut(s)	211, 383, 941
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 737, 740, 895
BstNI	CCWGG	2 cut(s)	514, 687
BstNSI	RCATGY	2 cut(s)	503, 522
BstSCI	CCNGG	2 cut(s)	512, 685
BstSFI	CTRYAG	1 cut(s)	738
BstV2I	GAAGAC	2 cut(s)	576, 864
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BstZ17I	GTATAC	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	685
BtsCI	GGATG	3 cut(s)	352, 771, 836
BtsIMutI	CAGTG	4 cut(s)	549, 564, 615, 711
Cac8I	GCNNGC	2 cut(s)	64, 811
CaiI	CAGNNNCTG	2 cut(s)	621, 737
Csp6I	GTAC	2 cut(s)	47, 373
CviAII	CATG	3 cut(s)	403, 500, 519
CviQI	GTAC	2 cut(s)	47, 373
DdeI	CTNAG	6 cut(s)	357, 376, 489, 541, 660, 703
DpnI	GATC	3 cut(s)	213, 385, 943
DpnII	GATC	3 cut(s)	211, 383, 941
DraIII	CACNNNGTG	1 cut(s)	938
Eam1104I	CTCTTC	3 cut(s)	86, 192, 820
EarI	CTCTTC	3 cut(s)	86, 192, 820
Eco130I	CCWWGG	2 cut(s)	670, 914
Eco147I	AGGCCT	1 cut(s)	685
Eco57I	CTGAAG	3 cut(s)	51, 216, 588
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	512, 685
EcoT14I	CCWWGG	2 cut(s)	670, 914
EcoT22I	ATGCAT	2 cut(s)	505, 838
ErhI	CCWWGG	2 cut(s)	670, 914
FaeI	CATG	3 cut(s)	406, 503, 522
FaiI	YATR	9 cut(s)	83, 404, 445, 462, 501, 520, 531, 798, 820
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 359, 391
FatI	CATG	3 cut(s)	402, 499, 518
FauI	CCCGC	1 cut(s)	719
FblI	GTMKAC	1 cut(s)	530
FokI	GGATG	3 cut(s)	339, 778, 823
FspBI	CTAG	2 cut(s)	42, 825
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	1 cut(s)	779
Hin1II	CATG	3 cut(s)	406, 503, 522
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	6 cut(s)	100, 340, 399, 627, 748, 775
HpaII	CCGG	1 cut(s)	779
Hpy166II	GTNNAC	3 cut(s)	421, 531, 613
Hpy188I	TCNGA	2 cut(s)	388, 663
Hpy188III	TCNNGA	6 cut(s)	335, 344, 430, 449, 752, 945
Hpy8I	GTNNAC	3 cut(s)	421, 531, 613
HpyAV	CCTTC	7 cut(s)	52, 172, 261, 291, 361, 756, 866
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	2 cut(s)	145, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 737, 740, 895
HpyF3I	CTNAG	6 cut(s)	357, 376, 489, 541, 660, 703
HpySE526I	ACGT	2 cut(s)	145, 712
Hsp92II	CATG	3 cut(s)	406, 503, 522
Kzo9I	GATC	3 cut(s)	211, 383, 941
LguI	GCTCTTC	1 cut(s)	820
LmnI	GCTCC	3 cut(s)	454, 661, 674
LweI	GCATC	3 cut(s)	512, 597, 845
MaeI	CTAG	2 cut(s)	42, 825
MaeII	ACGT	2 cut(s)	145, 712
MaeIII	GTNAC	3 cut(s)	265, 562, 708
MalI	GATC	3 cut(s)	213, 385, 943
MboI	GATC	3 cut(s)	211, 383, 941
MboII	GAAGA	7 cut(s)	103, 209, 323, 581, 807, 840, 869
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	7 cut(s)	36, 116, 278, 437, 597, 648, 721
MlyI	GAGTC	2 cut(s)	334, 742
MmeI	TCCRAC	1 cut(s)	812
MnlI	CCTC	9 cut(s)	87, 193, 285, 445, 486, 654, 669, 846, 912
Mph1103I	ATGCAT	2 cut(s)	505, 838
MseI	TTAA	2 cut(s)	74, 717
MspA1I	CMGCKG	1 cut(s)	737
MspCI	CTTAAG	1 cut(s)	73
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	2 cut(s)	514, 687
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	2 cut(s)	514, 687
MwoI	GCNNNNNNNGC	4 cut(s)	200, 737, 740, 895
NdeII	GATC	3 cut(s)	211, 383, 941
NlaIII	CATG	3 cut(s)	406, 503, 522
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	2 cut(s)	505, 838
NspI	RCATGY	2 cut(s)	503, 522
PaeR7I	CTCGAG	1 cut(s)	344
PasI	CCCWGGG	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	100, 399, 627, 775
PleI	GAGTC	2 cut(s)	334, 742
PpsI	GAGTC	2 cut(s)	334, 742
Psp6I	CCWGG	2 cut(s)	512, 685
PspGI	CCWGG	2 cut(s)	512, 685
PstI	CTGCAG	1 cut(s)	742
PstNI	CAGNNNCTG	2 cut(s)	621, 737
PsuI	RGATCY	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	2 cut(s)	48, 374
RsaNI	GTAC	2 cut(s)	47, 373
SapI	GCTCTTC	1 cut(s)	820
SaqAI	TTAA	2 cut(s)	74, 717
Sau3AI	GATC	3 cut(s)	211, 383, 941
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	2 cut(s)	334, 742
ScrFI	CCNGG	2 cut(s)	514, 687
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	3 cut(s)	512, 597, 845
SfcI	CTRYAG	1 cut(s)	738
Sfr274I	CTCGAG	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	4 cut(s)	73, 344, 449, 752
SmoI	CTYRAG	4 cut(s)	73, 344, 449, 752
Sse9I	AATT	7 cut(s)	36, 116, 278, 437, 597, 648, 721
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	4 cut(s)	624, 726, 807, 926
SspMI	CTAG	2 cut(s)	42, 825
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	2 cut(s)	512, 685
StyI	CCWWGG	2 cut(s)	670, 914
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	2 cut(s)	148, 715
TaqI	TCGA	1 cut(s)	345
TasI	AATT	7 cut(s)	36, 116, 278, 437, 597, 648, 721
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	2 cut(s)	809, 929
TfiI	GAWTC	4 cut(s)	100, 399, 627, 775
Tru1I	TTAA	2 cut(s)	74, 717
Tru9I	TTAA	2 cut(s)	74, 717
TscAI	CASTG	4 cut(s)	549, 571, 615, 711
TseFI	GTSAC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	391, 807, 879
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	4 cut(s)	549, 571, 615, 711
Vha464I	CTTAAG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	116, 278
XceI	RCATGY	2 cut(s)	503, 522
XhoI	CTCGAG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	530
XspI	CTAG	2 cut(s)	42, 825
ZrmI	AGTACT	1 cut(s)	374
Zsp2I	ATGCAT	2 cut(s)	505, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.