Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000935.1

Orthogroup ID

OG0014907

Physical Location & Seq

Genomic Coordinates Forward (+)

241978 .. 246387

Gene Structure 4410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000935.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

atgcagcctgatcaaagaaaaaagtctgtggatgtggacttcttcactgaatatggtgaggggagtaggtataaaatagaggaagtaattggtaaaggaagctatggagttgtttgttctgcgtttgatacgcatactggagaaaaggttattaaagcaaatgatgatttgacaccagaacattatcagttctttctttatcagcttctccgaggaatgaagtacatacacacagcaaatgtttttcaccgagatctaaaacccaaaaacatcttggcaaatgccgactgcaaactgaagatctgcgactttggtctcgctagagtagctttcaatgatactcccacagctatattttggacggactatgttgccacaagatggtacagggctcctgagttgtgtggatcatttttctcaaagtatacacctgcaatagatatctggagcattgggtgcatctttgcagagcttttaactggaaagcctctttttccgggcaaaaatgttgtccatcagttggacctcatgactgatttattgggaacaccatctgctgaagcaattgctagggtacgcaatgagaaggctcgcagatacttaagcagtatgagaaagaagaggcagattcctttttcccagaaattcccaaatgcagacccacttgctctacgtttattagaaagaatgttagcttttgaaccgaaggatagacctactgctgaagaggctcttgctgatccctatttcaagggtttggcaaaagtggagagagaaccttcggctcaaccagttaccaagatggaatttgagtttgagaggcgaaggataaccaaagaagatgttagagagcttatttatcgtgagactctcgagtatcatcctaagatgttgaaggagtacttagacggatcagagccaacaggattcatgtatccaagtgctgttgatcatttcaagaagcaatttgcatatcttgaggagcactatggaaatggcacagttggtgctgcacctgagaggcaacatgcatcactacccagggcatgtgtttcgtataccaataactcagtgcagcaaccaacagaagtcacagaagaccttgcaaaatgctgcatcaaagaaattgagaagccagtggacaggaactgcggaatccctacaacaaagcctccaattcaagctcctcagaccatccaaggagctgcaaggcctggcaaagttgttggctcagtgttacgttttaataattgcggggcagcagctgcagcagagactcttgagcagcgaaggatggttaggaatccggttgttccaactcaatatacggctgccgcaggctcttcatatcctagaagaaatgcatcctgcaaaaatgagagggaagacaatgaagtagaaggttcaaatgggttgctgccaaagccccctcaatacattccaaggaaagttgctgctgcacaaggtggatctggaagtcaatggtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

496

Amino Acids

55.98

Weight (kDa)

8.75

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19010
fragaria_vesca	FvH4_4g14280
malus_domestica	MD13G1181100.v1.1 MD16G1181800.v1.1
prunus_persica	Prupe.1G149300_v2.0.a1 Prupe.1G149300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0418931
rosa_laevigata	RLG00000007841
rosa_multiflora	Rmu_sc0000935.1_g000048
rosa_roxburghii	Rroxscaffold_5G00362010
rosa_rugosa	Rorug04G0155100
rosa_samantha	Rh4AG217000 Rh4BG213200 Rh4CG228800 Rh4DG215900
rosa_wichuraiana	Rw4G018560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccB7I	CCANNNNNTGG	2 cut(s)	381, 520
AccI	GTMKAC	2 cut(s)	425, 1058
AciI	CCGC	3 cut(s)	1152, 1254, 1335
AclWI	GGATC	4 cut(s)	415, 734, 919, 1477
AcsI	RAATTY	2 cut(s)	644, 806
AcuI	CTGAAG	3 cut(s)	317, 579, 744
AdeI	CACNNNGTG	1 cut(s)	1466
AfaI	GTAC	4 cut(s)	224, 386, 576, 902
AfiI	CCNNNNNNNGG	2 cut(s)	381, 520
AflII	CTTAAG	1 cut(s)	601
AgsI	TTSAA	7 cut(s)	334, 701, 751, 895, 958, 1181, 1407
AjnI	CCWGG	2 cut(s)	1040, 1213
Alw21I	GWGCWC	1 cut(s)	987
Alw26I	GTCTC	3 cut(s)	320, 860, 1268
AlwI	GGATC	4 cut(s)	415, 734, 919, 1477
AlwNI	CAGNNNCTG	2 cut(s)	1149, 1265
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	1 cut(s)	1211
ApoI	RAATTY	2 cut(s)	644, 806
ArsI	GACNNNNNNTTYG	2 cut(s)	495, 527
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	2 cut(s)	68, 239
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	394
BbsI	GAAGAC	2 cut(s)	1104, 1392
Bbv12I	GWGCWC	1 cut(s)	987
BccI	CCATC	6 cut(s)	375, 522, 559, 796, 1202, 1288
BceAI	ACGGC	1 cut(s)	1344
BcgI	CGANNNNNNTGC	2 cut(s)	1035, 1069
BciT130I	CCWGG	2 cut(s)	1042, 1215
BciVI	GTATCC	1 cut(s)	945
BclI	TGATCA	2 cut(s)	10, 949
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	3 cut(s)	320, 860, 1268
BfaI	CTAG	3 cut(s)	321, 570, 1353
BfmI	CTRYAG	1 cut(s)	1266
BfrI	CTTAAG	1 cut(s)	601
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	945
BglII	AGATCT	2 cut(s)	253, 300
BmcAI	AGTACT	1 cut(s)	902
Bme1390I	CCNGG	3 cut(s)	498, 1042, 1215
Bme18I	GGWCC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	3 cut(s)	498, 1042, 1215
BmsI	GCATC	4 cut(s)	468, 1040, 1125, 1373
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	2 cut(s)	1104, 1392
BpmI	CTGGAG	2 cut(s)	159, 466
BpuEI	CTTGAG	2 cut(s)	998, 1301
BpuMI	CCSGG	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	5 cut(s)	211, 1040, 1041, 1198, 1442
BsaWI	WCCGGW	1 cut(s)	1306
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 1156, 1186
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 520
Bse1I	ACTGG	4 cut(s)	142, 484, 791, 1136
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	1042, 1215
BseDI	CCNNGG	5 cut(s)	211, 1040, 1041, 1198, 1442
BseGI	GGATG	5 cut(s)	37, 880, 1194, 1299, 1364
BseLI	CCNNNNNNNGG	2 cut(s)	381, 520
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	5 cut(s)	387, 1008, 1083, 1202, 1245
BseNI	ACTGG	4 cut(s)	142, 484, 791, 1136
BseRI	GAGGAG	2 cut(s)	995, 1176
BsgI	GTGCAG	3 cut(s)	996, 1094, 1443
BshFI	GGCC	1 cut(s)	1213
BsiHKAI	GWGCWC	1 cut(s)	987
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	2 cut(s)	497, 1307
BslI	CCNNNNNNNGG	2 cut(s)	381, 520
BsmAI	GTCTC	3 cut(s)	320, 860, 1268
BsnI	GGCC	1 cut(s)	1213
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	2 cut(s)	394, 987
Bsp143I	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
BspACI	CCGC	3 cut(s)	1152, 1254, 1335
BspANI	GGCC	1 cut(s)	1213
BspCNI	CTCAG	5 cut(s)	388, 1009, 1082, 1201, 1244
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	1 cut(s)	1270
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	4 cut(s)	415, 734, 919, 1477
BspQI	GCTCTTC	1 cut(s)	1348
BspTI	CTTAAG	1 cut(s)	601
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	4 cut(s)	142, 484, 791, 1136
BssECI	CCNNGG	5 cut(s)	211, 1040, 1041, 1198, 1442
BssMI	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
BssNAI	GTATAC	2 cut(s)	426, 1059
BssT1I	CCWWGG	2 cut(s)	1198, 1442
Bst1107I	GTATAC	2 cut(s)	426, 1059
Bst2UI	CCWGG	2 cut(s)	1042, 1215
Bst4CI	ACNGT	1 cut(s)	1003
Bst6I	CTCTTC	3 cut(s)	614, 720, 1348
BstAFI	CTTAAG	1 cut(s)	601
BstAPI	GCANNNNNTGC	2 cut(s)	456, 1265
BstC8I	GCNNGC	2 cut(s)	592, 1339
BstDEI	CTNAG	7 cut(s)	396, 885, 904, 1017, 1069, 1188, 1231
BstF5I	GGATG	5 cut(s)	37, 880, 1194, 1299, 1364
BstKTI	GATC	8 cut(s)	13, 256, 303, 410, 742, 914, 952, 1472
BstMAI	GTCTC	3 cut(s)	320, 860, 1268
BstMBI	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
BstMWI	GCNNNNNNNGC	6 cut(s)	326, 456, 728, 1265, 1268, 1423
BstNI	CCWGG	2 cut(s)	1042, 1215
BstNSI	RCATGY	2 cut(s)	1031, 1050
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	3 cut(s)	496, 1040, 1213
BstSFI	CTRYAG	1 cut(s)	1266
BstV2I	GAAGAC	2 cut(s)	1104, 1392
BstX2I	RGATCY	3 cut(s)	253, 300, 1469
BstYI	RGATCY	3 cut(s)	253, 300, 1469
BstZ17I	GTATAC	2 cut(s)	426, 1059
BsuI	GTATCC	1 cut(s)	945
BsuRI	GGCC	1 cut(s)	1213
BtsCI	GGATG	5 cut(s)	37, 880, 1194, 1299, 1364
BtsIMutI	CAGTG	4 cut(s)	45, 1077, 1143, 1239
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	592, 1339
CaiI	CAGNNNCTG	2 cut(s)	1149, 1265
CciI	TCATGA	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	4 cut(s)	223, 385, 575, 901
CviAII	CATG	4 cut(s)	529, 931, 1028, 1047
CviQI	GTAC	4 cut(s)	223, 385, 575, 901
DdeI	CTNAG	7 cut(s)	396, 885, 904, 1017, 1069, 1188, 1231
DpnI	GATC	8 cut(s)	12, 255, 302, 409, 741, 913, 951, 1471
DpnII	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
DraIII	CACNNNGTG	1 cut(s)	1466
Eam1104I	CTCTTC	3 cut(s)	614, 720, 1348
EarI	CTCTTC	3 cut(s)	614, 720, 1348
Eco130I	CCWWGG	2 cut(s)	1198, 1442
Eco147I	AGGCCT	1 cut(s)	1213
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	3 cut(s)	317, 579, 744
Eco88I	CYCGRG	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	1040, 1213
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	1198, 1442
EcoT22I	ATGCAT	2 cut(s)	1033, 1366
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	1198, 1442
FaeI	CATG	4 cut(s)	532, 934, 1031, 1050
FalI	AAGNNNNNCTT	4 cut(s)	717, 749, 887, 919
FatI	CATG	4 cut(s)	528, 930, 1027, 1046
FauI	CCCGC	1 cut(s)	1247
FbaI	TGATCA	2 cut(s)	10, 949
FblI	GTMKAC	2 cut(s)	425, 1058
FokI	GGATG	5 cut(s)	44, 867, 1181, 1306, 1351
FriOI	GRGCYC	1 cut(s)	394
FspBI	CTAG	3 cut(s)	321, 570, 1353
GsuI	CTGGAG	2 cut(s)	159, 466
HaeIII	GGCC	1 cut(s)	1213
HapII	CCGG	2 cut(s)	497, 1307
Hin1II	CATG	4 cut(s)	532, 934, 1031, 1050
HinfI	GANTC	6 cut(s)	628, 868, 927, 1155, 1276, 1303
HpaII	CCGG	2 cut(s)	497, 1307
HphI	GGTGA	2 cut(s)	68, 239
Hpy166II	GTNNAC	4 cut(s)	37, 426, 1059, 1141
Hpy188I	TCNGA	3 cut(s)	212, 916, 1191
Hpy188III	TCNNGA	9 cut(s)	395, 445, 529, 863, 872, 958, 977, 1280, 1473
Hpy8I	GTNNAC	4 cut(s)	37, 426, 1059, 1141
HpyAV	CCTTC	7 cut(s)	580, 700, 789, 819, 889, 1284, 1394
HpyCH4III	ACNGT	1 cut(s)	1003
HpyCH4IV	ACGT	2 cut(s)	673, 1240
HpyF10VI	GCNNNNNNNGC	6 cut(s)	326, 456, 728, 1265, 1268, 1423
HpyF3I	CTNAG	7 cut(s)	396, 885, 904, 1017, 1069, 1188, 1231
HpySE526I	ACGT	2 cut(s)	673, 1240
Hsp92II	CATG	4 cut(s)	532, 934, 1031, 1050
Ksp22I	TGATCA	2 cut(s)	10, 949
Kzo9I	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
LguI	GCTCTTC	1 cut(s)	1348
LmnI	GCTCC	5 cut(s)	397, 447, 982, 1189, 1202
LweI	GCATC	4 cut(s)	468, 1040, 1125, 1373
MaeI	CTAG	3 cut(s)	321, 570, 1353
MaeII	ACGT	2 cut(s)	673, 1240
MaeIII	GTNAC	3 cut(s)	793, 1090, 1236
MalI	GATC	8 cut(s)	12, 255, 302, 409, 741, 913, 951, 1471
MboI	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
MboII	GAAGA	9 cut(s)	34, 310, 631, 737, 851, 1109, 1335, 1368, 1397
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	3 cut(s)	253, 300, 1469
MhlI	GDGCHC	2 cut(s)	394, 987
MluCI	AATT	8 cut(s)	87, 564, 644, 806, 965, 1125, 1176, 1249
MlyI	GAGTC	2 cut(s)	862, 1270
MmeI	TCCRAC	2 cut(s)	501, 1340
Mph1103I	ATGCAT	2 cut(s)	1033, 1366
MseI	TTAA	4 cut(s)	153, 476, 602, 1245
MspA1I	CMGCKG	1 cut(s)	1265
MspCI	CTTAAG	1 cut(s)	601
MspI	CCGG	2 cut(s)	497, 1307
MspR9I	CCNGG	3 cut(s)	498, 1042, 1215
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	2 cut(s)	1042, 1215
MwoI	GCNNNNNNNGC	6 cut(s)	326, 456, 728, 1265, 1268, 1423
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
NlaIII	CATG	4 cut(s)	532, 934, 1031, 1050
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	1090
NsiI	ATGCAT	2 cut(s)	1033, 1366
NspI	RCATGY	2 cut(s)	1031, 1050
PaeR7I	CTCGAG	1 cut(s)	872
PagI	TCATGA	1 cut(s)	528
PaqCI	CACCTGC	1 cut(s)	439
PasI	CCCWGGG	1 cut(s)	1041
PceI	AGGCCT	1 cut(s)	1213
PciSI	GCTCTTC	1 cut(s)	1348
PfeI	GAWTC	4 cut(s)	628, 927, 1155, 1303
PflMI	CCANNNNNTGG	2 cut(s)	381, 520
PleI	GAGTC	2 cut(s)	862, 1270
PpsI	GAGTC	2 cut(s)	862, 1270
PshAI	GACNNNNGTC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	1040, 1213
PspGI	CCWGG	2 cut(s)	1040, 1213
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	1270
PstNI	CAGNNNCTG	2 cut(s)	1149, 1265
PsuI	RGATCY	3 cut(s)	253, 300, 1469
PvuII	CAGCTG	1 cut(s)	1265
RsaI	GTAC	4 cut(s)	224, 386, 576, 902
RsaNI	GTAC	4 cut(s)	223, 385, 575, 901
SapI	GCTCTTC	1 cut(s)	1348
SaqAI	TTAA	4 cut(s)	153, 476, 602, 1245
Sau3AI	GATC	8 cut(s)	10, 253, 300, 407, 739, 911, 949, 1469
Sau96I	GGNCC	1 cut(s)	523
ScaI	AGTACT	1 cut(s)	902
SchI	GAGTC	2 cut(s)	862, 1270
ScrFI	CCNGG	3 cut(s)	498, 1042, 1215
SduI	GDGCHC	2 cut(s)	394, 987
SfaNI	GCATC	4 cut(s)	468, 1040, 1125, 1373
SfcI	CTRYAG	1 cut(s)	1266
Sfr274I	CTCGAG	1 cut(s)	872
SinI	GGWCC	1 cut(s)	523
SlaI	CTCGAG	1 cut(s)	872
SmlI	CTYRAG	4 cut(s)	601, 872, 977, 1280
SmoI	CTYRAG	4 cut(s)	601, 872, 977, 1280
Sse9I	AATT	8 cut(s)	87, 564, 644, 806, 965, 1125, 1176, 1249
SseBI	AGGCCT	1 cut(s)	1213
SsiI	CCGC	3 cut(s)	1152, 1254, 1335
SspMI	CTAG	3 cut(s)	321, 570, 1353
StuI	AGGCCT	1 cut(s)	1213
StyD4I	CCNGG	3 cut(s)	496, 1040, 1213
StyI	CCWWGG	2 cut(s)	1198, 1442
TaaI	ACNGT	1 cut(s)	1003
TaiI	ACGT	2 cut(s)	676, 1243
TaqI	TCGA	1 cut(s)	873
TasI	AATT	8 cut(s)	87, 564, 644, 806, 965, 1125, 1176, 1249
TatI	WGTACW	2 cut(s)	222, 900
TauI	GCSGC	1 cut(s)	1337
TfiI	GAWTC	4 cut(s)	628, 927, 1155, 1303
Tru1I	TTAA	4 cut(s)	153, 476, 602, 1245
Tru9I	TTAA	4 cut(s)	153, 476, 602, 1245
TscAI	CASTG	4 cut(s)	52, 1077, 1143, 1239
TseFI	GTSAC	1 cut(s)	1090
Tsp45I	GTSAC	1 cut(s)	1090
TspDTI	ATGAA	4 cut(s)	233, 919, 1335, 1407
TspGWI	ACGGA	2 cut(s)	377, 924
TspRI	CASTG	4 cut(s)	52, 1077, 1143, 1239
Van91I	CCANNNNNTGG	2 cut(s)	381, 520
Vha464I	CTTAAG	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	2 cut(s)	644, 806
XceI	RCATGY	2 cut(s)	1031, 1050
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	872
XmiI	GTMKAC	2 cut(s)	425, 1058
XspI	CTAG	3 cut(s)	321, 570, 1353
ZrmI	AGTACT	1 cut(s)	902
Zsp2I	ATGCAT	2 cut(s)	1033, 1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.