Rroxscaffold_5G00362010

mitogen-activated protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
42838619 .. 42843621
5003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362010.1

Sequence Viewer

Length: 1791 bp
ATGTTATTGAGCATCTGGGGTGTTAGATGCGCCTATTGGATTGTTGCTTTGAAAGTTTTTGGATGCTTTGTTACTGAGATGCAGCCTGATCAAAGAAAAAAGATTCTCCTGCTTGGTGTAGATTTTTATGTTCACAATTCGTTGTGGTTGTCTGGTATTGTGTGGTGCATAATCAGTGGTTGTATCATGTCTGTGGATGTGGACTTCTTCACTGAATATGGTGAGGGGAGTAGGTATAAAATAGAGGAAGTTATTGGTAAAGGAAGCTATGGAGTTGTTTGTTCTGCGTTTGATACGCATACTGGAGAAAAGGTAGCTATCAAGAAAATAAATGATATTTTTGAACATGTCTCGGATGCCACCCGCATCCTTCGTGAGATTAAACTTCTTAGGCTCCTGCGTCATCCGGACATTGTGGAGATCAAGCACATTTTGTTACCTCCATCCAGAAGGGAATTCAAAGACATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTTATTAAAGCAAATGATGATTTGACACCAGAACATTATCAGTTCTTTCTTTATCAGCTTCTCCGAGGAATGAAGTACATACACACAGCAAATGTTTTTCACCGAGATCTAAAACCCAAAAACATCTTGGCAAATGCTGACTGCAAACTGAAGATCTGCGACTTTGGTCTTGCTAGAGTGGCTTTCAATGATACTCCCACAGCTATATTTTGGACGTATACACCTGCAATAGATATCTGGAGCATTGGGTGCATCTTTGCAGAGCTTTTAACTGGAAAGCCTCTTTTTCCTGGCAAAAATGTTGTCCATCAGTTGGACCTCATGACTGATTTATTGGGAACACCATCTGCTGAAGCAATTGCTAGGGTACGCAATGAGAAGGCTCGCAGATACTTGAGCAGTATGAGAAAGAAGAGGCAGATTCCTTTTTCCCAGAAATTCCCAAATGCAGACCCACTTGCTCTACGTTTATTAGAAAGAATGTTAGCGTTTGAACCGAAGGATAGACCTACTGCTGAAGAGGCTCTTGCTGATCCCTATTTCAAGGGTTTGGCAAAAGTGGAGAGAGAACCTTCGGCTCAACCAGTTACCAAGATGGAATTTGAGTTTGAGAGGCGAAGGATAACCAAAGAAGATGTTAGAGAGCTTATTTATCGTGAGACTCTCGAGTATCATCCAAAGATGTTGAAGGAGTACTTAGACGGATCAGAGCCAACAGGATTCATGTATCCAAGTGCTGTTGACCATTTCAAGAAGCAATTTGCTTATCTTGAGGAGCACTATGGAAATGGCACAGTTGGTGCTGCACCTGAGAGGCAACATGCATCACTACCCAGGGCATGTGTTTCGTATACCAATAATTCAGTGCAGCAACCAACAGAAGTCACAGAAGACCTTGCAAAATGCTGCATCAAAGAAGTTGAGAAGCCAGTGGACAGGAACTGCGGAATCCCTATAACAAAGCTTCCAATTCAAGCTCCTCAGACCATCCAAGGAGCTGCAAGGCCTGGCAAAGTTGTTGGCTCAGTGTTACGTTTTAATAATTGCGGGGCAGCAGCTGCAGCAGAGACTCTTGAGCAGCGAAGGATGGTTAGGAATCCAGTTGTTCCAACTCAATATACGGCTGCCGCAGGCTCTTCATATCCTAGAAGAAATGCATCCTGCAAAAATGAGAGGGAAGACAATGAAGTGGAAGGTTCAACTGGGTTGCTGCCAAAGCCCCCTCAATACATTCCAAGGAAAGTTGCTGCTGCACAAGGTGGATCTGGAAGTCAATGGTATTGA

Protein Analysis

596

Amino Acids

67.62

Weight (kDa)

8.57

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 79 - 350 1.1e-54 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 80 - 262 4.3e-26 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014907)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 739
Acc36I ACCTGC 1 cut(s) 739
AccB7I CCANNNNNTGG 1 cut(s) 820
AccI GTMKAC 2 cut(s) 725, 1358
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 4 cut(s) 364, 1452, 1554, 1635
AclWI GGATC 3 cut(s) 1034, 1219, 1777
AcsI RAATTY 3 cut(s) 455, 944, 1106
AcuI CTGAAG 3 cut(s) 677, 879, 1044
AdeI CACNNNGTG 1 cut(s) 1766
AfaI GTAC 3 cut(s) 584, 876, 1202
AfiI CCNNNNNNNGG 1 cut(s) 820
AflIII ACRYGT 1 cut(s) 346
AjnI CCWGG 3 cut(s) 796, 1340, 1513
Alw21I GWGCWC 1 cut(s) 1287
Alw26I GTCTC 3 cut(s) 355, 1160, 1568
AlwI GGATC 3 cut(s) 1034, 1219, 1777
AlwNI CAGNNNCTG 2 cut(s) 1449, 1565
Ama87I CYCGRG 1 cut(s) 1172
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 1 cut(s) 1511
ApoI RAATTY 3 cut(s) 455, 944, 1106
ArsI GACNNNNNNTTYG 2 cut(s) 795, 827
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 823
AsuHPI GGTGA 2 cut(s) 233, 599
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 1 cut(s) 823
BbsI GAAGAC 2 cut(s) 1404, 1692
Bbv12I GWGCWC 1 cut(s) 1287
BccI CCATC 6 cut(s) 451, 822, 859, 1096, 1502, 1588
BceAI ACGGC 1 cut(s) 1644
BcgI CGANNNNNNTGC 2 cut(s) 1335, 1369
BciT130I CCWGG 3 cut(s) 798, 1342, 1515
BciVI GTATCC 1 cut(s) 1245
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 355, 1160, 1568
BfaI CTAG 3 cut(s) 681, 870, 1653
BfmI CTRYAG 1 cut(s) 1566
BfuAI ACCTGC 1 cut(s) 739
BfuI GTATCC 1 cut(s) 1245
BglII AGATCT 2 cut(s) 613, 660
BmcAI AGTACT 1 cut(s) 1202
Bme1390I CCNGG 3 cut(s) 798, 1342, 1515
Bme18I GGWCC 1 cut(s) 823
BmeT110I CYCGRG 1 cut(s) 1172
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 3 cut(s) 798, 1342, 1515
BmrI ACTGGG 1 cut(s) 1719
BmuI ACTGGG 1 cut(s) 1719
BoxI GACNNNNGTC 1 cut(s) 672
BpiI GAAGAC 2 cut(s) 1404, 1692
BpmI CTGGAG 2 cut(s) 324, 766
BpuEI CTTGAG 3 cut(s) 922, 1298, 1601
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 5 cut(s) 571, 1340, 1341, 1498, 1742
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse1I ACTGG 6 cut(s) 307, 784, 1091, 1436, 1607, 1714
Bse3DI GCAATG 1 cut(s) 886
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 3 cut(s) 798, 1342, 1515
BseDI CCNNGG 5 cut(s) 571, 1340, 1341, 1498, 1742
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 4 cut(s) 66, 1308, 1502, 1545
BseNI ACTGG 6 cut(s) 307, 784, 1091, 1436, 1607, 1714
BseRI GAGGAG 2 cut(s) 1295, 1476
BsgI GTGCAG 3 cut(s) 1296, 1394, 1743
BshFI GGCC 1 cut(s) 1513
BsiHKAI GWGCWC 1 cut(s) 1287
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 3 cut(s) 355, 1160, 1568
BsnI GGCC 1 cut(s) 1513
BsoBI CYCGRG 1 cut(s) 1172
Bsp1286I GDGCHC 1 cut(s) 1287
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
BspACI CCGC 4 cut(s) 364, 1452, 1554, 1635
BspANI GGCC 1 cut(s) 1513
BspCNI CTCAG 4 cut(s) 67, 1309, 1501, 1544
BspEI TCCGGA 1 cut(s) 406
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 1 cut(s) 395
BspMAI CTGCAG 1 cut(s) 1570
BspMI ACCTGC 1 cut(s) 739
BspPI GGATC 3 cut(s) 1034, 1219, 1777
BspQI GCTCTTC 1 cut(s) 1648
BsrDI GCAATG 1 cut(s) 886
BsrI ACTGG 6 cut(s) 307, 784, 1091, 1436, 1607, 1714
BssECI CCNNGG 5 cut(s) 571, 1340, 1341, 1498, 1742
BssMI GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
BssNAI GTATAC 2 cut(s) 726, 1359
BssT1I CCWWGG 2 cut(s) 1498, 1742
Bst1107I GTATAC 2 cut(s) 726, 1359
Bst2UI CCWGG 3 cut(s) 798, 1342, 1515
Bst4CI ACNGT 1 cut(s) 1303
Bst6I CTCTTC 3 cut(s) 914, 1020, 1648
BstAPI GCANNNNNTGC 2 cut(s) 756, 1565
BstC8I GCNNGC 2 cut(s) 892, 1639
BstDEI CTNAG 6 cut(s) 75, 389, 1204, 1317, 1488, 1531
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 7 cut(s) 91, 423, 616, 663, 1042, 1214, 1772
BstMAI GTCTC 3 cut(s) 355, 1160, 1568
BstMBI GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
BstMWI GCNNNNNNNGC 6 cut(s) 686, 756, 1028, 1565, 1568, 1723
BstNI CCWGG 3 cut(s) 798, 1342, 1515
BstNSI RCATGY 3 cut(s) 350, 1331, 1350
BstPAI GACNNNNGTC 1 cut(s) 672
BstSCI CCNGG 3 cut(s) 796, 1340, 1513
BstSFI CTRYAG 1 cut(s) 1566
BstV2I GAAGAC 2 cut(s) 1404, 1692
BstX2I RGATCY 3 cut(s) 613, 660, 1769
BstYI RGATCY 3 cut(s) 613, 660, 1769
BstZ17I GTATAC 2 cut(s) 726, 1359
BsuI GTATCC 1 cut(s) 1245
BsuRI GGCC 1 cut(s) 1513
BtsIMutI CAGTG 5 cut(s) 181, 210, 1377, 1443, 1539
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 2 cut(s) 892, 1639
CaiI CAGNNNCTG 2 cut(s) 1449, 1565
CciI TCATGA 1 cut(s) 828
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 823
CseI GACGC 1 cut(s) 389
Csp6I GTAC 3 cut(s) 583, 875, 1201
CviAII CATG 7 cut(s) 187, 347, 487, 829, 1231, 1328, 1347
CviQI GTAC 3 cut(s) 583, 875, 1201
DdeI CTNAG 6 cut(s) 75, 389, 1204, 1317, 1488, 1531
DpnI GATC 7 cut(s) 90, 422, 615, 662, 1041, 1213, 1771
DpnII GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
DraIII CACNNNGTG 1 cut(s) 1766
Eam1104I CTCTTC 3 cut(s) 914, 1020, 1648
EarI CTCTTC 3 cut(s) 914, 1020, 1648
Eco130I CCWWGG 2 cut(s) 1498, 1742
Eco147I AGGCCT 1 cut(s) 1513
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 1 cut(s) 823
Eco57I CTGAAG 3 cut(s) 677, 879, 1044
Eco88I CYCGRG 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 796, 1340, 1513
EcoRV GATATC 1 cut(s) 742
EcoT14I CCWWGG 2 cut(s) 1498, 1742
EcoT22I ATGCAT 2 cut(s) 1333, 1666
ErhI CCWWGG 2 cut(s) 1498, 1742
FaeI CATG 7 cut(s) 190, 350, 490, 832, 1234, 1331, 1350
FalI AAGNNNNNCTT 4 cut(s) 1017, 1049, 1187, 1219
FatI CATG 7 cut(s) 186, 346, 486, 828, 1230, 1327, 1346
FauI CCCGC 2 cut(s) 371, 1547
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 2 cut(s) 725, 1358
FspBI CTAG 3 cut(s) 681, 870, 1653
GlaI GCGC 1 cut(s) 31
GsuI CTGGAG 2 cut(s) 324, 766
HaeIII GGCC 1 cut(s) 1513
HapII CCGG 1 cut(s) 407
HgaI GACGC 1 cut(s) 389
HhaI GCGC 1 cut(s) 32
Hin1II CATG 7 cut(s) 190, 350, 490, 832, 1234, 1331, 1350
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HindIII AAGCTT 1 cut(s) 1469
HinfI GANTC 8 cut(s) 103, 491, 928, 1168, 1227, 1455, 1576, 1603
HpaII CCGG 1 cut(s) 407
HphI GGTGA 2 cut(s) 233, 599
Hpy166II GTNNAC 6 cut(s) 133, 202, 726, 1249, 1359, 1441
Hpy188I TCNGA 5 cut(s) 355, 496, 572, 1216, 1491
Hpy8I GTNNAC 6 cut(s) 133, 202, 726, 1249, 1359, 1441
HpyAV CCTTC 9 cut(s) 380, 444, 880, 1000, 1089, 1119, 1189, 1584, 1694
HpyCH4III ACNGT 1 cut(s) 1303
HpyCH4IV ACGT 3 cut(s) 722, 973, 1540
HpyF10VI GCNNNNNNNGC 6 cut(s) 686, 756, 1028, 1565, 1568, 1723
HpyF3I CTNAG 6 cut(s) 75, 389, 1204, 1317, 1488, 1531
HpySE526I ACGT 3 cut(s) 722, 973, 1540
Hsp92II CATG 7 cut(s) 190, 350, 490, 832, 1234, 1331, 1350
HspAI GCGC 1 cut(s) 30
Kpn2I TCCGGA 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
LguI GCTCTTC 1 cut(s) 1648
LmnI GCTCC 5 cut(s) 399, 747, 1282, 1489, 1502
MaeI CTAG 3 cut(s) 681, 870, 1653
MaeII ACGT 3 cut(s) 722, 973, 1540
MaeIII GTNAC 5 cut(s) 70, 435, 1093, 1390, 1536
MalI GATC 7 cut(s) 90, 422, 615, 662, 1041, 1213, 1771
MboI GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
MboII GAAGA 9 cut(s) 199, 670, 931, 1037, 1151, 1409, 1635, 1668, 1697
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 3 cut(s) 613, 660, 1769
MhlI GDGCHC 1 cut(s) 1287
MluCI AATT 9 cut(s) 136, 455, 864, 944, 1106, 1265, 1366, 1476, 1549
MlyI GAGTC 2 cut(s) 1162, 1570
MmeI TCCRAC 2 cut(s) 801, 1640
Mph1103I ATGCAT 2 cut(s) 1333, 1666
MroI TCCGGA 1 cut(s) 406
MseI TTAA 4 cut(s) 381, 513, 776, 1545
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 1565
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 3 cut(s) 798, 1342, 1515
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 3 cut(s) 798, 1342, 1515
MwoI GCNNNNNNNGC 6 cut(s) 686, 756, 1028, 1565, 1568, 1723
NdeII GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
NlaIII CATG 7 cut(s) 190, 350, 490, 832, 1234, 1331, 1350
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 1 cut(s) 1390
NsiI ATGCAT 2 cut(s) 1333, 1666
NspI RCATGY 3 cut(s) 350, 1331, 1350
PaeR7I CTCGAG 1 cut(s) 1172
PagI TCATGA 1 cut(s) 828
PaqCI CACCTGC 1 cut(s) 739
PasI CCCWGGG 1 cut(s) 1341
PceI AGGCCT 1 cut(s) 1513
PciI ACATGT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 1648
PfeI GAWTC 6 cut(s) 103, 491, 928, 1227, 1455, 1603
PflMI CCANNNNNTGG 1 cut(s) 820
PleI GAGTC 2 cut(s) 1162, 1570
PpsI GAGTC 2 cut(s) 1162, 1570
PscI ACATGT 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 672
Psp6I CCWGG 3 cut(s) 796, 1340, 1513
PspGI CCWGG 3 cut(s) 796, 1340, 1513
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 1 cut(s) 823
PstI CTGCAG 1 cut(s) 1570
PstNI CAGNNNCTG 2 cut(s) 1449, 1565
PsuI RGATCY 3 cut(s) 613, 660, 1769
PvuII CAGCTG 1 cut(s) 1565
RsaI GTAC 3 cut(s) 584, 876, 1202
RsaNI GTAC 3 cut(s) 583, 875, 1201
RseI CAYNNNNRTG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 1648
SaqAI TTAA 4 cut(s) 381, 513, 776, 1545
Sau3AI GATC 7 cut(s) 88, 420, 613, 660, 1039, 1211, 1769
Sau96I GGNCC 1 cut(s) 823
ScaI AGTACT 1 cut(s) 1202
SchI GAGTC 2 cut(s) 1162, 1570
ScrFI CCNGG 3 cut(s) 798, 1342, 1515
SduI GDGCHC 1 cut(s) 1287
SfcI CTRYAG 1 cut(s) 1566
Sfr274I CTCGAG 1 cut(s) 1172
SinI GGWCC 1 cut(s) 823
SlaI CTCGAG 1 cut(s) 1172
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 4 cut(s) 901, 1172, 1277, 1580
SmoI CTYRAG 4 cut(s) 901, 1172, 1277, 1580
Sse9I AATT 9 cut(s) 136, 455, 864, 944, 1106, 1265, 1366, 1476, 1549
SseBI AGGCCT 1 cut(s) 1513
SsiI CCGC 4 cut(s) 364, 1452, 1554, 1635
SspMI CTAG 3 cut(s) 681, 870, 1653
StuI AGGCCT 1 cut(s) 1513
StyD4I CCNGG 3 cut(s) 796, 1340, 1513
StyI CCWWGG 2 cut(s) 1498, 1742
TaaI ACNGT 1 cut(s) 1303
TaiI ACGT 3 cut(s) 725, 976, 1543
TaqI TCGA 1 cut(s) 1173
TasI AATT 9 cut(s) 136, 455, 864, 944, 1106, 1265, 1366, 1476, 1549
TatI WGTACW 2 cut(s) 582, 1200
TauI GCSGC 1 cut(s) 1637
TfiI GAWTC 6 cut(s) 103, 491, 928, 1227, 1455, 1603
Tru1I TTAA 4 cut(s) 381, 513, 776, 1545
Tru9I TTAA 4 cut(s) 381, 513, 776, 1545
TscAI CASTG 5 cut(s) 181, 217, 1377, 1443, 1539
TseFI GTSAC 1 cut(s) 1390
Tsp45I GTSAC 1 cut(s) 1390
TspDTI ATGAA 4 cut(s) 593, 1219, 1635, 1707
TspGWI ACGGA 1 cut(s) 1224
TspRI CASTG 5 cut(s) 181, 217, 1377, 1443, 1539
Van91I CCANNNNNTGG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 823
XapI RAATTY 3 cut(s) 455, 944, 1106
XceI RCATGY 3 cut(s) 350, 1331, 1350
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XhoI CTCGAG 1 cut(s) 1172
XmiI GTMKAC 2 cut(s) 725, 1358
XspI CTAG 3 cut(s) 681, 870, 1653
ZrmI AGTACT 1 cut(s) 1202
Zsp2I ATGCAT 2 cut(s) 1333, 1666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.