Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G11980 |
| fragaria_vesca | FvH4_5g22621 |
| malus_domestica | MD07G1147200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0478011 RchiOBHm_Chr3g0478541 RchiOBHm_Chr3g0483741 RchiOBHm_Chr4g0426441 |
| rosa_roxburghii | Rroxscaffold_6G00403310 |
| rosa_samantha | Rh3AG215800 Rh3AG256600 Rh3BG173200 Rh3BG302700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 86 |
| AdeI | CACNNNGTG | 1 cut(s) | 194 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AgsI | TTSAA | 1 cut(s) | 26 |
| AluBI | AGCT | 1 cut(s) | 121 |
| AluI | AGCT | 1 cut(s) | 121 |
| Ama87I | CYCGRG | 1 cut(s) | 155 |
| AoxI | GGCC | 1 cut(s) | 163 |
| ApeKI | GCWGC | 2 cut(s) | 88, 118 |
| AspS9I | GGNCC | 1 cut(s) | 164 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AvaI | CYCGRG | 1 cut(s) | 155 |
| BbvI | GCAGC | 2 cut(s) | 75, 130 |
| BfmI | CTRYAG | 1 cut(s) | 141 |
| BisI | GCNGC | 2 cut(s) | 89, 119 |
| BlsI | GCNGC | 2 cut(s) | 90, 120 |
| BmeT110I | CYCGRG | 1 cut(s) | 155 |
| BmgT120I | GGNCC | 1 cut(s) | 164 |
| BsaAI | YACGTR | 1 cut(s) | 194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseXI | GCAGC | 2 cut(s) | 75, 130 |
| BshFI | GGCC | 1 cut(s) | 165 |
| BsiHKCI | CYCGRG | 1 cut(s) | 155 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsnI | GGCC | 1 cut(s) | 165 |
| BsoBI | CYCGRG | 1 cut(s) | 155 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspACI | CCGC | 1 cut(s) | 86 |
| BspANI | GGCC | 1 cut(s) | 165 |
| BssMI | GATC | 1 cut(s) | 3 |
| Bst4CI | ACNGT | 1 cut(s) | 110 |
| BstBAI | YACGTR | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 2 cut(s) | 116, 186 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 97 |
| BstSFI | CTRYAG | 1 cut(s) | 141 |
| BstV1I | GCAGC | 2 cut(s) | 75, 130 |
| BsuRI | GGCC | 1 cut(s) | 165 |
| Cac8I | GCNNGC | 2 cut(s) | 116, 186 |
| Cfr13I | GGNCC | 1 cut(s) | 164 |
| CviAII | CATG | 1 cut(s) | 40 |
| CviJI | RGCY | 3 cut(s) | 100, 121, 165 |
| CviKI_1 | RGCY | 3 cut(s) | 100, 121, 165 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| DraI | TTTAAA | 1 cut(s) | 232 |
| DraIII | CACNNNGTG | 1 cut(s) | 194 |
| Eco88I | CYCGRG | 1 cut(s) | 155 |
| FaeI | CATG | 1 cut(s) | 43 |
| FaiI | YATR | 1 cut(s) | 41 |
| FatI | CATG | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 2 cut(s) | 89, 119 |
| Fsp4HI | GCNGC | 2 cut(s) | 89, 119 |
| GluI | GCNGC | 2 cut(s) | 89, 119 |
| HaeIII | GGCC | 1 cut(s) | 165 |
| Hin1II | CATG | 1 cut(s) | 43 |
| HinfI | GANTC | 1 cut(s) | 79 |
| HphI | GGTGA | 1 cut(s) | 22 |
| HpyAV | CCTTC | 2 cut(s) | 50, 182 |
| HpyCH4III | ACNGT | 1 cut(s) | 110 |
| HpyCH4IV | ACGT | 1 cut(s) | 193 |
| HpyCH4V | TGCA | 2 cut(s) | 91, 188 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 97 |
| HpySE526I | ACGT | 1 cut(s) | 193 |
| Hsp92II | CATG | 1 cut(s) | 43 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LpnPI | CCDG | 1 cut(s) | 180 |
| Lsp1109I | GCAGC | 2 cut(s) | 75, 130 |
| MaeII | ACGT | 1 cut(s) | 193 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 1 cut(s) | 25 |
| MluCI | AATT | 1 cut(s) | 48 |
| MnlI | CCTC | 3 cut(s) | 58, 67, 93 |
| MseI | TTAA | 2 cut(s) | 212, 231 |
| MspA1I | CMGCKG | 1 cut(s) | 88 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 97 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 1 cut(s) | 43 |
| PaeR7I | CTCGAG | 1 cut(s) | 155 |
| PfeI | GAWTC | 1 cut(s) | 79 |
| PkrI | GCNGC | 2 cut(s) | 90, 120 |
| Ppu21I | YACGTR | 1 cut(s) | 194 |
| PspPI | GGNCC | 1 cut(s) | 164 |
| PspXI | VCTCGAGB | 1 cut(s) | 155 |
| SaqAI | TTAA | 2 cut(s) | 212, 231 |
| SatI | GCNGC | 2 cut(s) | 89, 119 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| Sau96I | GGNCC | 1 cut(s) | 164 |
| SetI | ASST | 3 cut(s) | 12, 123, 196 |
| SfcI | CTRYAG | 1 cut(s) | 141 |
| Sfr274I | CTCGAG | 1 cut(s) | 155 |
| SlaI | CTCGAG | 1 cut(s) | 155 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 1 cut(s) | 48 |
| SsiI | CCGC | 1 cut(s) | 86 |
| TaaI | ACNGT | 1 cut(s) | 110 |
| TaiI | ACGT | 1 cut(s) | 196 |
| TaqI | TCGA | 2 cut(s) | 6, 156 |
| TasI | AATT | 1 cut(s) | 48 |
| TfiI | GAWTC | 1 cut(s) | 79 |
| Tru1I | TTAA | 2 cut(s) | 212, 231 |
| Tru9I | TTAA | 2 cut(s) | 212, 231 |
| TseI | GCWGC | 2 cut(s) | 88, 118 |
| TspDTI | ATGAA | 2 cut(s) | 56, 164 |
| XhoI | CTCGAG | 1 cut(s) | 155 |