Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017474

Physical Location & Seq

Genomic Coordinates Reverse (-)

25770769 .. 25785269

Gene Structure 14501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGTTGAGGAGAAAGAGGGAATTCCTCCGGTGCGACAAAGGCTGATTTATGCTGGCAAGCTTGGAGATGAGAAAACTGCAAAAGACTACAACATTGAAGGTGGCTTTGTCCTTCATTTACTGCCTGCACTACGTGGTGGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

49

Amino Acids

5.38

Weight (kDa)

6.54

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	2 - 41	6.4e-11	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11980
fragaria_vesca	FvH4_5g22621
malus_domestica	MD07G1147200.v1.1
rosa_chinensis	RchiOBHm_Chr3g0478011 RchiOBHm_Chr3g0478541 RchiOBHm_Chr3g0483741 RchiOBHm_Chr4g0426441
rosa_roxburghii	Rroxscaffold_6G00403310
rosa_samantha	Rh3AG215800 Rh3AG256600 Rh3BG173200 Rh3BG302700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	55, 59, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	55, 59, 126
CviJI	RGCY	3 cut(s)	43, 61, 105
CviKI_1	RGCY	3 cut(s)	43, 61, 105
DraIII	CACNNNGTG	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	21
FaiI	YATR	2 cut(s)	51, 148
HapII	CCGG	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	59
HpaII	CCGG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	92, 122
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	80, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	133
LpnPI	CCDG	3 cut(s)	39, 42, 138
MaeII	ACGT	1 cut(s)	133
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	2 cut(s)	10, 36
MspI	CCGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	134
SetI	ASST	3 cut(s)	63, 103, 136
SgeI	CNNG	6 cut(s)	41, 66, 70, 74, 137, 146
Sse9I	AATT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	136
TasI	AATT	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	104
XapI	RAATTY	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.