RchiOBHm_Chr4g0433471

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
57590132 .. 57590830
699 bp
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UTR
Exon/CDS
Intron
PRQ40198

Sequence Viewer

Length: 204 bp
ATGGTGAGATCAAGGGTCTGCTTCTTTCCTCCGCACAGAGAGACAGAGAGCGAAGGGAGTAAGAGGAAGAAGAAGAGATTCAGCAGTAAGCAAGTAAACTATGGAAGGAGGGAAGAAATTCTTCCTGCTGTATGTTCCTATGCGGAATCAAATCCAATTAAAGCAAGATTCTTGCCGGGTTTTCTTATTTATTCCTATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.9

Weight (kDa)

10.09

Isoelectric Point (pI)

79.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 143
AcsI RAATTY 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 117
Asp700I GAANNNNTTC 3 cut(s) 77, 117, 120
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 2 cut(s) 32, 143
BssMI GATC 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 68
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 175
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
FaiI YATR 4 cut(s) 102, 133, 141, 198
FalI AAGNNNNNCTT 2 cut(s) 105, 137
HapII CCGG 1 cut(s) 176
HinfI GANTC 3 cut(s) 78, 146, 168
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 47, 99
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 2 cut(s) 138, 189
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 5 cut(s) 79, 82, 85, 113, 125
MluCI AATT 2 cut(s) 117, 156
MnlI CCTC 3 cut(s) 39, 57, 102
MroXI GAANNNNTTC 3 cut(s) 77, 117, 120
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 177
NciI CCSGG 1 cut(s) 177
NdeII GATC 1 cut(s) 8
PdmI GAANNNNTTC 3 cut(s) 77, 117, 120
PfeI GAWTC 3 cut(s) 78, 146, 168
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 177
SgeI CNNG 7 cut(s) 24, 104, 137, 177, 184, 188, 189
Sse9I AATT 2 cut(s) 117, 156
SsiI CCGC 2 cut(s) 32, 143
StyD4I CCNGG 1 cut(s) 175
TasI AATT 2 cut(s) 117, 156
TfiI GAWTC 3 cut(s) 78, 146, 168
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
XapI RAATTY 1 cut(s) 117
XmnI GAANNNNTTC 3 cut(s) 77, 117, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.