Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017807

Physical Location & Seq

Genomic Coordinates Forward (+)

60178374 .. 60179092

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAACTCAATTGATTTTGAGGCCAGTTACAAGCCAAAGACTTATTTGCTGAAAGCTATAGCAATATTTGCGGCAGCTGCAACAGGGACGGTGGGGGTGGCAATTAACCACTCATGGGTTGCTGCTAATCAGGATGTTGCCATGGTACAGGATGTTGCCATGGCACTGGTATTTGGAATAGGATATGCAGGCATTATTTTTGAAGAATCTCTGGCCTTCAACAAGAGTGGAGTAGGTTTGATAATGGCTGTATGCTTGTGGACAGTGAGAAGTATTGGTGCTCCTGCAACTGATATAGCTGTTGCAGAGTTACAACATGCATCTGCTGAAGTCAGTGAAATAGTGTTTTTCTTGCTTGGTGCAATGACAATTGTAGAGATAGTTGATTCTCATCGAGGATTTAAGCTGGTCACTGACAATATAACTACTCGAAAGCCGAGAACACTCTTCTGGGTGGTGAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

155

Amino Acids

16.64

Weight (kDa)

5.5

Isoelectric Point (pI)

23.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017807)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0433471 RchiOBHm_Chr6g0255471
rosa_laevigata	RLG00000035501
rosa_roxburghii	Rroxscaffold_3G00256690 Rroxscaffold_4G00326860 Rroxscaffold_7G00198010 Rroxscaffold_7G00209920
rosa_rugosa	Rorug06G0193800
rosa_samantha	Rh2DG156100 Rh4BG348600 Rh5AG305800 Rh6AG076800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	203, 220
AluBI	AGCT	5 cut(s)	56, 77, 299, 406, 462
AluI	AGCT	5 cut(s)	56, 77, 299, 406, 462
Alw21I	GWGCWC	1 cut(s)	283
AoxI	GGCC	2 cut(s)	21, 213
ApeKI	GCWGC	3 cut(s)	74, 77, 122
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	3 cut(s)	64, 86, 109
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	4 cut(s)	72, 75, 78, 123
BlsI	GCNGC	4 cut(s)	73, 76, 79, 124
BmsI	GCATC	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	141, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	24, 171
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	141, 159
BseGI	GGATG	2 cut(s)	139, 157
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	24, 171
BseXI	GCAGC	3 cut(s)	64, 86, 109
BshFI	GGCC	2 cut(s)	23, 215
BsiHKAI	GWGCWC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	23, 215
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp19I	CCATGG	2 cut(s)	141, 159
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	23, 215
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	24, 171
BssECI	CCNNGG	2 cut(s)	141, 159
BssT1I	CCWWGG	2 cut(s)	141, 159
Bst4CI	ACNGT	2 cut(s)	91, 265
Bst6I	CTCTTC	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	190
BstDSI	CCRYGG	2 cut(s)	141, 159
BstF5I	GGATG	2 cut(s)	139, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNSI	RCATGY	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	64, 86, 109
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	23, 215
BtgI	CCRYGG	2 cut(s)	141, 159
BtsCI	GGATG	2 cut(s)	139, 157
BtsIMutI	CAGTG	4 cut(s)	164, 270, 340, 411
Cac8I	GCNNGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	146
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	4 cut(s)	114, 142, 160, 317
CviQI	GTAC	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	141, 159
Eco57I	CTGAAG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	141, 159
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	141, 159
FaeI	CATG	4 cut(s)	117, 145, 163, 320
FaiI	YATR	9 cut(s)	59, 115, 143, 161, 186, 253, 296, 318, 422
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	4 cut(s)	113, 141, 159, 316
Fnu4HI	GCNGC	4 cut(s)	72, 75, 78, 123
FokI	GGATG	2 cut(s)	146, 164
Fsp4HI	GCNGC	4 cut(s)	72, 75, 78, 123
GluI	GCNGC	4 cut(s)	72, 75, 78, 123
HaeIII	GGCC	2 cut(s)	23, 215
Hin1II	CATG	4 cut(s)	117, 145, 163, 320
HinfI	GANTC	2 cut(s)	206, 386
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	91, 265
HpyCH4V	TGCA	6 cut(s)	80, 188, 287, 305, 320, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
Hsp92II	CATG	4 cut(s)	117, 145, 163, 320
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	3 cut(s)	64, 86, 109
LweI	GCATC	1 cut(s)	329
MaeIII	GTNAC	3 cut(s)	26, 309, 409
MboII	GAAGA	2 cut(s)	215, 439
MfeI	CAATTG	2 cut(s)	9, 369
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	3 cut(s)	9, 102, 369
MnlI	CCTC	2 cut(s)	13, 389
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	2 cut(s)	105, 402
MspA1I	CMGCKG	1 cut(s)	77
MunI	CAATTG	2 cut(s)	9, 369
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NcoI	CCATGG	2 cut(s)	141, 159
NlaIII	CATG	4 cut(s)	117, 145, 163, 320
NmeAIII	GCCGAG	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	206, 386
PkrI	GCNGC	4 cut(s)	73, 76, 79, 124
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	105, 402
SatI	GCNGC	4 cut(s)	72, 75, 78, 123
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	6 cut(s)	58, 79, 238, 301, 408, 464
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	9, 102, 369
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	141, 159
TaaI	ACNGT	2 cut(s)	91, 265
TaqI	TCGA	2 cut(s)	394, 430
TasI	AATT	3 cut(s)	9, 102, 369
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	206, 386
Tru1I	TTAA	2 cut(s)	105, 402
Tru9I	TTAA	2 cut(s)	105, 402
TscAI	CASTG	4 cut(s)	171, 270, 340, 418
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	3 cut(s)	74, 77, 122
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	4 cut(s)	171, 270, 340, 418
XceI	RCATGY	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.