Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017807

Physical Location & Seq

Genomic Coordinates Reverse (-)

11098198 .. 11100433

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGCTCAATTGATTTTGAGGCCAGTTACGAGCCAAAGACTGATTTGCTGAAAGCTCTGGCAATATTTGCGGCAGCTGCAACAGGGACTGTGATTATGGCAATTAGCCACTCATGGGTTGCTGCTAATCAGGATGTTGCCATGGCACTGCTATTTGGAATAGGATATGCAGGCATTATTTTTGAAGAATTTCTGGCCTTCAACAAGAGTGGAGTAGGTTTGATAATGGCTGTATGCTTGTGGACAGTGAGAAGTATTGGTGCTCCTTCAACTGATATAGCTGTTGCAGAGTTACAACATGCATCTGCTGAAGTCGGTGAAATAGTGTTTTTCTTGCTTGGTGCAATGACAATTGTAGAGACAGTTGATTCTCATCAAGGATTTAAGCTGGTCACTGACAATATAACTACTCGAAAGCCAAGAACACTCCTCTGGGCGGGATTATTTATACCAGCAGTCGTTTCTGTTGCTGTTCCACTGGCACTTTTGTCCCTTACAAGGTACTTCATATGCATTGTCATAGGAAGGACAAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

179

Amino Acids

19.14

Weight (kDa)

5.53

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017807)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0433471 RchiOBHm_Chr6g0255471
rosa_laevigata	RLG00000035501
rosa_roxburghii	Rroxscaffold_3G00256690 Rroxscaffold_4G00326860 Rroxscaffold_7G00198010 Rroxscaffold_7G00209920
rosa_rugosa	Rorug06G0193800
rosa_samantha	Rh2DG156100 Rh4BG348600 Rh5AG305800 Rh6AG076800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	71, 437
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	115, 436, 498
AgsI	TTSAA	3 cut(s)	185, 202, 270
AluBI	AGCT	6 cut(s)	6, 56, 77, 281, 388, 537
AluI	AGCT	6 cut(s)	6, 56, 77, 281, 388, 537
Alw21I	GWGCWC	2 cut(s)	8, 265
Alw26I	GTCTC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	2 cut(s)	21, 195
ApeKI	GCWGC	3 cut(s)	74, 77, 122
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 265
BbvI	GCAGC	3 cut(s)	64, 86, 109
BcoDI	GTCTC	1 cut(s)	353
BisI	GCNGC	4 cut(s)	72, 75, 78, 123
BlsI	GCNGC	4 cut(s)	73, 76, 79, 124
BmsI	GCATC	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 436, 498
Bse1I	ACTGG	2 cut(s)	24, 483
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	3 cut(s)	115, 436, 498
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	24, 483
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	3 cut(s)	64, 86, 109
BshFI	GGCC	2 cut(s)	23, 197
BsiHKAI	GWGCWC	2 cut(s)	8, 265
BslFI	GGGAC	2 cut(s)	100, 475
BslI	CCNNNNNNNGG	3 cut(s)	115, 436, 498
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	100, 475
BsnI	GGCC	2 cut(s)	23, 197
Bsp1286I	GDGCHC	2 cut(s)	8, 265
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	71, 437
BspANI	GGCC	2 cut(s)	23, 197
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	24, 483
BssECI	CCNNGG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	91, 247, 364
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	172
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNSI	RCATGY	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	64, 86, 109
BsuRI	GGCC	2 cut(s)	23, 197
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	4 cut(s)	146, 252, 393, 476
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	502
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	3 cut(s)	114, 142, 299
CviQI	GTAC	1 cut(s)	502
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	141
EcoT22I	ATGCAT	2 cut(s)	304, 515
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	117, 145, 302
FaqI	GGGAC	2 cut(s)	100, 475
FatI	CATG	3 cut(s)	113, 141, 298
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	509
Fnu4HI	GCNGC	4 cut(s)	72, 75, 78, 123
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	72, 75, 78, 123
GluI	GCNGC	4 cut(s)	72, 75, 78, 123
HaeIII	GGCC	2 cut(s)	23, 197
Hin1II	CATG	3 cut(s)	117, 145, 302
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	208, 276, 519
HpyCH4III	ACNGT	3 cut(s)	91, 247, 364
HpyCH4V	TGCA	6 cut(s)	80, 170, 287, 302, 344, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
Hsp92II	CATG	3 cut(s)	117, 145, 302
LmnI	GCTCC	2 cut(s)	268, 534
Lsp1109I	GCAGC	3 cut(s)	64, 86, 109
LweI	GCATC	1 cut(s)	311
MaeIII	GTNAC	3 cut(s)	26, 291, 391
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	2 cut(s)	9, 351
MhlI	GDGCHC	2 cut(s)	8, 265
MluCI	AATT	4 cut(s)	9, 102, 188, 351
MnlI	CCTC	2 cut(s)	13, 440
Mph1103I	ATGCAT	2 cut(s)	304, 515
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	77
MunI	CAATTG	2 cut(s)	9, 351
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	509
NlaIII	CATG	3 cut(s)	117, 145, 302
NmuCI	GTSAC	1 cut(s)	391
NsiI	ATGCAT	2 cut(s)	304, 515
NspI	RCATGY	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	73, 76, 79, 124
Psp124BI	GAGCTC	1 cut(s)	8
PstNI	CAGNNNCTG	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	4 cut(s)	72, 75, 78, 123
SduI	GDGCHC	2 cut(s)	8, 265
SetI	ASST	8 cut(s)	8, 58, 79, 220, 283, 390, 503, 539
SfaNI	GCATC	1 cut(s)	311
Sse9I	AATT	4 cut(s)	9, 102, 188, 351
SsiI	CCGC	2 cut(s)	71, 437
SspI	AATATT	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	91, 247, 364
TaqI	TCGA	1 cut(s)	412
TasI	AATT	4 cut(s)	9, 102, 188, 351
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	4 cut(s)	153, 252, 400, 483
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	3 cut(s)	74, 77, 122
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	496
TspRI	CASTG	4 cut(s)	153, 252, 400, 483
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	189
Zsp2I	ATGCAT	2 cut(s)	304, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.