Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017807

Physical Location & Seq

Genomic Coordinates Reverse (-)

10778250 .. 10780380

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAATTAACCACTCATGGGTTGCTGCTAATCAGGATGTTGCCATGACACTGCTATTTGGAATAGGATATGCAGGCATTATTTTTGAAGAATCTCTGGCCTTCAACAAGAGTGGAGTAGGTTTGATAATGGCTGTATGCTTGTGGATAGTGAGAAGTATTGGTGCTCCTTCAACTGATATAGTTGTTGCTGTTGCAGAGTTACAACATGCATCTGCTGAAGTCAGTGAAATAGTATTTTTCTTGCTTGGTGCAATGACAATTGTAGAGACAGTTGATTCTCATCAAGGATTTAAGCTGGTCACTGACAATATAACTACTCGAAAGCCAAGAACACTCCTCTGGGCGGTAAGCTTTTCACTCTGCTCTCAAGTTTATGTATTTCTATTGGACATTTGGTATATCATATTTTATTTTATGAGGAGGAAGAAGAGATTCAGCAGTAAGCAAGTAAACTATGGAAAGAGGGAAGAACTTCCTGCGGTATGTTCCTATGCGGAATCAAATCCGATTGAACCAAGGTTCGATTTCGAATTGGAGAATAAGACGATTGCTCATAAGCAATTGTTGGGGCAAAATCGATTTTGGGGATGTCATTATTTTCTTAGAGATTCAAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

207

Amino Acids

23.49

Weight (kDa)

6.95

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017807)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0433471 RchiOBHm_Chr6g0255471
rosa_laevigata	RLG00000035501
rosa_roxburghii	Rroxscaffold_3G00256690 Rroxscaffold_4G00326860 Rroxscaffold_7G00198010 Rroxscaffold_7G00209920
rosa_rugosa	Rorug06G0193800
rosa_samantha	Rh2DG156100 Rh4BG348600 Rh5AG305800 Rh6AG076800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	347, 482, 497
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	19, 346
AgsI	TTSAA	5 cut(s)	89, 106, 174, 515, 615
AluBI	AGCT	3 cut(s)	298, 354, 618
AluI	AGCT	3 cut(s)	298, 354, 618
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	26
Asp700I	GAANNNNTTC	2 cut(s)	434, 474
AsuII	TTCGAA	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 346
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	580
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	2 cut(s)	43, 596
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	19, 346
BseMI	GCAATG	1 cut(s)	261
BseRI	GAGGAG	2 cut(s)	329, 436
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	19, 346
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	347, 482, 497
BspANI	GGCC	1 cut(s)	101
BspDI	ATCGAT	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	43, 596
BstMAI	GTCTC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	43, 596
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	3 cut(s)	50, 232, 303
Cac8I	GCNNGC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	580
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	3 cut(s)	18, 46, 209
CviJI	RGCY	6 cut(s)	101, 134, 298, 328, 354, 618
CviKI_1	RGCY	6 cut(s)	101, 134, 298, 328, 354, 618
DdeI	CTNAG	1 cut(s)	605
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	518
EcoT22I	ATGCAT	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	3 cut(s)	21, 49, 212
FatI	CATG	3 cut(s)	17, 45, 208
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	50, 603
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	21, 49, 212
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	5 cut(s)	92, 278, 435, 500, 611
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	2 cut(s)	112, 180
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	4 cut(s)	74, 197, 212, 254
HpyF3I	CTNAG	1 cut(s)	605
Hsp92II	CATG	3 cut(s)	21, 49, 212
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	20, 60, 83, 284, 328, 492
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	201, 301
MboII	GAAGA	4 cut(s)	101, 439, 442, 482
MfeI	CAATTG	2 cut(s)	261, 563
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	4 cut(s)	6, 261, 533, 563
MnlI	CCTC	4 cut(s)	350, 414, 417, 459
Mph1103I	ATGCAT	1 cut(s)	214
MroXI	GAANNNNTTC	2 cut(s)	434, 474
MseI	TTAA	2 cut(s)	9, 294
MunI	CAATTG	2 cut(s)	261, 563
NlaIII	CATG	3 cut(s)	21, 49, 212
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	531
PdmI	GAANNNNTTC	2 cut(s)	434, 474
PfeI	GAWTC	5 cut(s)	92, 278, 435, 500, 611
PkrI	GCNGC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	9, 294
SatI	GCNGC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	5 cut(s)	124, 300, 356, 524, 620
SfaNI	GCATC	1 cut(s)	221
SfuI	TTCGAA	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	4 cut(s)	6, 261, 533, 563
SsiI	CCGC	3 cut(s)	347, 482, 497
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	4 cut(s)	322, 525, 531, 580
TasI	AATT	4 cut(s)	6, 261, 533, 563
TfiI	GAWTC	5 cut(s)	92, 278, 435, 500, 611
Tru1I	TTAA	2 cut(s)	9, 294
Tru9I	TTAA	2 cut(s)	9, 294
TscAI	CASTG	3 cut(s)	57, 232, 310
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	301
TspRI	CASTG	3 cut(s)	57, 232, 310
XceI	RCATGY	1 cut(s)	212
XmnI	GAANNNNTTC	2 cut(s)	434, 474
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.