Rh4BG348600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017807
Physical Location & Seq
Reverse (-)
51089545 .. 51091359
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG348600.1

Sequence Viewer

Length: 486 bp
ATGCAGAATCAAATCCAATTGAAGCAAGATTCTTGCTGGGTTTTCTTATGTGTTCCTATAAATAGAAGCAATTGTTGGGGCAAAATCGATTCTGGGGATGTCATTATTTTCTTAGAGATTCAAGCTATTAAAGCTCCTGAATTTTCAAGGAGGACTTTTGATGGCAACTTTGTCTTCAATTGGATCAATTTACGAGTAGAGTGCCTTCATTGTGGTGTTCAGGTTCCTGGTCAATATAGCTGTGTTAATATCTGCCATTGGGTTTTTGTGGTTTTATTTATAGATACAGCACGTATTCAAAATAAATCTCACTGTTCTCTCTGTTTTGGCTCTTCAGTTTTCTTTTATATGTTTGAAGTTGGCTGCTTTGGGATTGTTAAACTGAGGTTAAGTTTGATTCGGTCTCATTGCTATGAAAAGTATGGATTTCTAAAGAAGGAGGTCACTGCTGTGATATGTATAGTCCAAATGATTGAATTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.61

Weight (kDa)

8.26

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 318
AgsI TTSAA 7 cut(s) 22, 122, 147, 178, 299, 356, 476
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 3 cut(s) 125, 134, 240
AluI AGCT 3 cut(s) 125, 134, 240
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 408
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 87
BseGI GGATG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 36
BshVI ATCGAT 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 408
Bso31I GGTCTC 1 cut(s) 408
Bsp143I GATC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 375
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 406
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 112, 383
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 2 cut(s) 310, 444
ClaI ATCGAT 1 cut(s) 87
CviJI RGCY 5 cut(s) 125, 134, 240, 330, 363
CviKI_1 RGCY 5 cut(s) 125, 134, 240, 330, 363
DdeI CTNAG 2 cut(s) 112, 383
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 226
FalI AAGNNNNNCTT 2 cut(s) 139, 171
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 364
GluI GCNGC 1 cut(s) 364
GsaI CCCAGC 1 cut(s) 40
HinfI GANTC 5 cut(s) 7, 29, 89, 118, 397
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 215, 430
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 112, 383
HpySE526I ACGT 1 cut(s) 292
Kzo9I GATC 1 cut(s) 183
LguI GCTCTTC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 22, 78, 150, 206, 213, 240
Lsp1109I GCAGC 1 cut(s) 350
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 442
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 166, 324
MfeI CAATTG 3 cut(s) 17, 70, 178
MluCI AATT 6 cut(s) 17, 70, 140, 178, 187, 476
MnlI CCTC 3 cut(s) 144, 378, 433
MseI TTAA 5 cut(s) 129, 246, 378, 389, 484
MslI CAYNNNNRTG 3 cut(s) 213, 411, 449
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 3 cut(s) 17, 70, 178
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 442
OliI CACNNNNGTG 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 337
PfeI GAWTC 5 cut(s) 7, 29, 89, 118, 397
PkrI GCNGC 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 225
RseI CAYNNNNRTG 3 cut(s) 213, 411, 449
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 5 cut(s) 129, 246, 378, 389, 484
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 228
SetI ASST 7 cut(s) 127, 136, 225, 242, 295, 389, 444
SmiMI CAYNNNNRTG 3 cut(s) 213, 411, 449
Sse9I AATT 6 cut(s) 17, 70, 140, 178, 187, 476
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 87
TaqII GACCGA 1 cut(s) 390
TasI AATT 6 cut(s) 17, 70, 140, 178, 187, 476
TfiI GAWTC 5 cut(s) 7, 29, 89, 118, 397
Tru1I TTAA 5 cut(s) 129, 246, 378, 389, 484
Tru9I TTAA 5 cut(s) 129, 246, 378, 389, 484
TscAI CASTG 2 cut(s) 317, 451
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 197, 429
TspRI CASTG 2 cut(s) 317, 451
XapI RAATTY 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.