Rroxscaffold_3G00256690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017807
Physical Location & Seq
Reverse (-)
51032141 .. 51047511
15371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256690.1

Sequence Viewer

Length: 630 bp
ATGCCGCCTAGGCCCGGCACGATCGTGGGCGACGTCATGAGGAGCTCGGCAATCTTCGGACGCGCCTTGGGAGGGAGTGGACGACCGGGCATCGACGCGTGGCGCAGCAAAGGACAGAAAGTGGAGCCGGATGCTTGTCTCGTAGCGACAGAGATAGGGGCGGCATGCCACGTGGATTCTTCCCATTGGTGGGTTTTGAATTCGGGCCTAATGGTCAAGCAATCCCGACCCTTCATTTCAATCAAATTTGAATTCCTACGGCTTACAATTAACATTGCCCCCACCCCCGCCCCCACACATCTGTGTGTTTTCTGTGGTACCAAGTCACCGCCACCTATTTGCTTCTCCTGCCACCGATTAGTATTGGCGTGGCTGCGCGTCCTTGCTCTACAGAGATTAAGCAGTAAGCAAGTAATTTCTGGAAAGAGGGAAGAACTTCCTGTGGTATGTTGCTATGCGGAATCAAATCCAATTGAAGCAAGGATATGTCTGCTGGAGCAAAGGACAACTTCCAAAACCAGTTTTGGGCTGGAAACCAAGATAGTGGCAGCATCTGCTAATCCAGATTCGTATGGCAAAGGCACCAGATTTTTGAGACAATTTTGCATGGGGCATTACGTTCTTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.86

Weight (kDa)

9.42

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 317, 581
AccII CGCG 3 cut(s) 63, 98, 378
AciI CCGC 5 cut(s) 5, 161, 288, 329, 458
AcsI RAATTY 3 cut(s) 199, 245, 251
AcvI CACGTG 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 5 cut(s) 14, 72, 189, 190, 525
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 199, 240, 251, 476
AleI CACNNNNGTG 2 cut(s) 23, 301
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 2 cut(s) 143, 589
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 2 cut(s) 11, 205
ApeKI GCWGC 3 cut(s) 105, 373, 548
ApoI RAATTY 3 cut(s) 199, 245, 251
Asp700I GAANNNNTTC 1 cut(s) 435
Asp718I GGTACC 1 cut(s) 317
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 3 cut(s) 65, 105, 378
AspS9I GGNCC 2 cut(s) 12, 205
AsuC2I CCSGG 2 cut(s) 15, 87
AsuHPI GGTGA 1 cut(s) 318
AvrII CCTAGG 1 cut(s) 8
BanI GGYRCC 2 cut(s) 317, 581
BanII GRGCYC 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 3 cut(s) 117, 360, 560
BceAI ACGGC 1 cut(s) 275
BcnI CCSGG 2 cut(s) 15, 87
BcoDI GTCTC 2 cut(s) 143, 589
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 389
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 5 cut(s) 5, 106, 162, 374, 549
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 5 cut(s) 6, 107, 163, 375, 550
Bme1390I CCNGG 2 cut(s) 15, 87
BmgT120I GGNCC 2 cut(s) 12, 205
BmiI GGNNCC 3 cut(s) 126, 319, 583
BmrFI CCNGG 2 cut(s) 15, 87
BmsI GCATC 3 cut(s) 99, 121, 560
BpmI CTGGAG 1 cut(s) 515
BpuMI CCSGG 2 cut(s) 15, 87
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 8, 66
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 72, 189, 190, 525
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 8, 66
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 5 cut(s) 14, 72, 189, 190, 525
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 519
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 3 cut(s) 117, 360, 560
Bsh1236I CGCG 3 cut(s) 63, 98, 378
Bsh1285I CGRYCG 2 cut(s) 24, 86
BshFI GGCC 2 cut(s) 13, 207
BshNI GGYRCC 2 cut(s) 317, 581
BsiEI CGRYCG 2 cut(s) 24, 86
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 3 cut(s) 15, 86, 128
BslI CCNNNNNNNGG 5 cut(s) 14, 72, 189, 190, 525
BsmAI GTCTC 2 cut(s) 143, 589
BsnI GGCC 2 cut(s) 13, 207
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 5 cut(s) 5, 161, 288, 329, 458
BspANI GGCC 2 cut(s) 13, 207
BspFNI CGCG 3 cut(s) 63, 98, 378
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 126, 319, 583
BspT107I GGYRCC 2 cut(s) 317, 581
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 8, 66
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 8, 66
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 166
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 3 cut(s) 63, 98, 378
BstHHI GCGC 3 cut(s) 65, 105, 378
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 2 cut(s) 143, 589
BstMBI GATC 1 cut(s) 21
BstMCI CGRYCG 2 cut(s) 24, 86
BstMWI GCNNNNNNNGC 3 cut(s) 10, 348, 554
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 13, 85
BstSFI CTRYAG 1 cut(s) 389
BstUI CGCG 3 cut(s) 63, 98, 378
BstV1I GCAGC 3 cut(s) 117, 360, 560
BstXI CCANNNNNNTGG 1 cut(s) 544
BsuRI GGCC 2 cut(s) 13, 207
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 554
CciI TCATGA 1 cut(s) 36
CfoI GCGC 3 cut(s) 65, 105, 378
Cfr13I GGNCC 2 cut(s) 12, 205
CseI GACGC 3 cut(s) 69, 104, 367
Csp6I GTAC 1 cut(s) 318
CviAII CATG 3 cut(s) 37, 165, 607
CviJI RGCY 7 cut(s) 13, 45, 127, 207, 262, 373, 529
CviKI_1 RGCY 7 cut(s) 13, 45, 127, 207, 262, 373, 529
CviQI GTAC 1 cut(s) 318
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 8, 66
Eco24I GRGCYC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 45
Eco72I CACGTG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 45
EcoRI GAATTC 2 cut(s) 199, 251
EcoT14I CCWWGG 2 cut(s) 8, 66
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 2 cut(s) 8, 66
FaeI CATG 3 cut(s) 40, 168, 610
FaiI YATR 7 cut(s) 38, 166, 448, 456, 487, 573, 608
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FatI CATG 3 cut(s) 36, 164, 606
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 5, 106, 162, 374, 549
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 5 cut(s) 5, 106, 162, 374, 549
FspBI CTAG 1 cut(s) 9
GlaI GCGC 3 cut(s) 64, 104, 377
GluI GCNGC 5 cut(s) 5, 106, 162, 374, 549
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 2 cut(s) 13, 207
HapII CCGG 3 cut(s) 15, 86, 128
HgaI GACGC 3 cut(s) 69, 104, 367
HhaI GCGC 3 cut(s) 65, 105, 378
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 40, 168, 610
Hin6I GCGC 3 cut(s) 63, 103, 376
HinP1I GCGC 3 cut(s) 63, 103, 376
HinfI GANTC 3 cut(s) 176, 461, 566
HpaII CCGG 3 cut(s) 15, 86, 128
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 4 cut(s) 37, 225, 420, 563
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 2 cut(s) 35, 98
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 3 cut(s) 33, 171, 618
HpyCH4V TGCA 1 cut(s) 606
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 348, 554
HpySE526I ACGT 3 cut(s) 33, 171, 618
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 40, 168, 610
HspAI GCGC 3 cut(s) 63, 103, 376
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 3 cut(s) 42, 124, 496
Lsp1109I GCAGC 3 cut(s) 117, 360, 560
LweI GCATC 3 cut(s) 99, 121, 560
MaeI CTAG 1 cut(s) 9
MaeII ACGT 3 cut(s) 33, 171, 618
MaeIII GTNAC 1 cut(s) 324
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 46, 171, 443
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 7 cut(s) 199, 245, 251, 267, 414, 471, 599
MluI ACGCGT 1 cut(s) 96
MnlI CCTC 3 cut(s) 33, 65, 420
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 2 cut(s) 270, 398
MslI CAYNNNNRTG 3 cut(s) 23, 301, 303
MspI CCGG 3 cut(s) 15, 86, 128
MspR9I CCNGG 2 cut(s) 15, 87
MunI CAATTG 1 cut(s) 471
MvnI CGCG 3 cut(s) 63, 98, 378
MwoI GCNNNNNNNGC 3 cut(s) 10, 348, 554
NciI CCSGG 2 cut(s) 15, 87
NdeII GATC 1 cut(s) 21
NlaIII CATG 3 cut(s) 40, 168, 610
NlaIV GGNNCC 3 cut(s) 126, 319, 583
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 324
NspI RCATGY 1 cut(s) 168
OliI CACNNNNGTG 2 cut(s) 23, 301
PaeI GCATGC 1 cut(s) 168
PagI TCATGA 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 3 cut(s) 176, 461, 566
PkrI GCNGC 5 cut(s) 6, 107, 163, 375, 550
Ple19I CGATCG 1 cut(s) 24
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 47
PspCI CACGTG 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 126, 319, 583
PspPI GGNCC 2 cut(s) 12, 205
PstNI CAGNNNCTG 1 cut(s) 554
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 3 cut(s) 23, 301, 303
SacI GAGCTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 270, 398
SatI GCNGC 5 cut(s) 5, 106, 162, 374, 549
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 2 cut(s) 12, 205
ScrFI CCNGG 2 cut(s) 15, 87
SduI GDGCHC 1 cut(s) 47
SetI ASST 5 cut(s) 36, 47, 174, 337, 621
SfaNI GCATC 3 cut(s) 99, 121, 560
SfcI CTRYAG 1 cut(s) 389
SmiMI CAYNNNNRTG 3 cut(s) 23, 301, 303
SphI GCATGC 1 cut(s) 168
Sse9I AATT 7 cut(s) 199, 245, 251, 267, 414, 471, 599
SsiI CCGC 5 cut(s) 5, 161, 288, 329, 458
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 13, 85
StyI CCWWGG 2 cut(s) 8, 66
TaiI ACGT 3 cut(s) 36, 174, 621
TaqI TCGA 1 cut(s) 93
TasI AATT 7 cut(s) 199, 245, 251, 267, 414, 471, 599
TauI GCSGC 2 cut(s) 7, 164
TfiI GAWTC 3 cut(s) 176, 461, 566
Tru1I TTAA 2 cut(s) 270, 398
Tru9I TTAA 2 cut(s) 270, 398
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 3 cut(s) 105, 373, 548
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 223
XapI RAATTY 3 cut(s) 199, 245, 251
XceI RCATGY 1 cut(s) 168
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 1 cut(s) 9
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.