Rroxscaffold_7G00198010

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
42728436 .. 42731732
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198010.1

Sequence Viewer

Length: 240 bp
ATGTCATTATTTTCTGAGAGATTCAAGTTGTTGAAGCTTCTGAATTTTCAAGGAGGACTTTTGATGGGTATTGATGAATTTCCCACTGTTCTCGGCAACTTTGTCTTCGATTGGATCAATTTACGAGTAGAGTGCCTTCTGTGTGATGTTCAGATGCTTTTGGAAGATATTAGCCCTATCATATGCTCTCAGATTGCGAAAGCTTCTCTGAATCAACTCAAACTGTTCCTAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.08

Weight (kDa)

5.14

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 2 cut(s) 43, 77
AgsI TTSAA 3 cut(s) 25, 34, 50
AluBI AGCT 2 cut(s) 37, 203
AluI AGCT 2 cut(s) 37, 203
AlwI GGATC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 43, 77
AxyI CCTNAGG 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 120, 152
BbsI GAAGAC 1 cut(s) 97
BccI CCATC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 6, 203
Bsp143I GATC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 7, 202
BspPI GGATC 1 cut(s) 122
BssMI GATC 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 88, 225
BstDEI CTNAG 3 cut(s) 15, 189, 230
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 84
CviJI RGCY 3 cut(s) 37, 174, 203
CviKI_1 RGCY 3 cut(s) 37, 174, 203
DdeI CTNAG 3 cut(s) 15, 189, 230
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 230
FaiI YATR 2 cut(s) 182, 184
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FauNDI CATATG 1 cut(s) 182
HindIII AAGCTT 2 cut(s) 35, 201
HinfI GANTC 2 cut(s) 21, 211
Hpy188I TCNGA 5 cut(s) 16, 42, 153, 192, 210
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 88, 225
HpyF3I CTNAG 3 cut(s) 15, 189, 230
Kzo9I GATC 1 cut(s) 114
LweI GCATC 1 cut(s) 144
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 2 cut(s) 97, 176
MluCI AATT 4 cut(s) 43, 77, 118, 235
MnlI CCTC 1 cut(s) 47
NdeI CATATG 1 cut(s) 182
NdeII GATC 1 cut(s) 114
NmeAIII GCCGAG 1 cut(s) 72
PfeI GAWTC 2 cut(s) 21, 211
Sau3AI GATC 1 cut(s) 114
SetI ASST 2 cut(s) 39, 205
SfaNI GCATC 1 cut(s) 144
SgeI CNNG 4 cut(s) 37, 62, 104, 137
Sse9I AATT 4 cut(s) 43, 77, 118, 235
TaaI ACNGT 2 cut(s) 88, 225
TaqI TCGA 1 cut(s) 108
TasI AATT 4 cut(s) 43, 77, 118, 235
TfiI GAWTC 2 cut(s) 21, 211
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 1 cut(s) 91
XapI RAATTY 2 cut(s) 43, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.