Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009127

Physical Location & Seq

Genomic Coordinates Forward (+)

59361657 .. 59364550

Gene Structure 2894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCTCTGCTTACCTTTTGCCCAGTCCTCCCTCCAAACTCCTTCCCTTATTCCTCTGTCCTAAACCGCACAACACCAAACCCAGTGCACACGACAAGAACACGAACCAGAACACCATCATCAGGAACCTTGGCGGCTTCGTCTTCGTCTGAGGATTCTCACAAGTCAACAAAGTTGGTCACTTTCTTGGGGAAAGGTGGGTCTGGCAAGACCACCTCTGCCATTTTCGCTGCCCAGCATTTTGCAATGGCTGGCTTTAGCACATGTTTGGTGATACATACACAAGATCCCTCTACTGAGTTCCTTCTAAACTGCAAAATTGGAACATCTCCAGTTCTATGCAGCCATAACCTTTCGGCTCTTAGGTTTGAAACCACCAAAATGCTTCTAGGACCTTTGAAGCAGCTAAAGCAAGCAGATGCTCGACTTAATATGACACAAGGAATTCTTGAAGGGATTTTTGGAGAAGAGCTTGGCGTGCTTCCTGGGATGGATCCTATTTTTTCCGCATTAGCACTTGAGAGGCTTGTGGGGTTCTTTGGGAATGTGGCTCAAAGAAACCACGATAAAGATAAATTTGACATAATTGTGTATGATGGTATGAGCTCCGAGGAAATGCTAAGGATGATAAGTGCAGCCGGTAAAGCAAGGTTGTACTTAAAATATCTACGGAATGTGGCTGAGAAAACTGATCTTGGGAGGATGGCCGGTCCTTCACTTCTCAGACTTGTGGATGAAGCCATGAGTATAACCAGCAGTAAACCTCTTTTCAATGGGAAAATGAGTGCAGAAATATGGGACAGTGTTGAAAAAATGTTGGAGAGAGGGTCGTCTGCTTTCTCAGAACCTCAAAAATTTGGCTGCTTCCTAATGTTGGACCCAGACAATCCAGCATCAATTAGTTCTGCATTACGATATTGGGGTTGCACAATCCAAGCTGGTGGACAGATTTCTGGAGCATTTGCCATCGCATCACCAAAATTGAATACTGAATCAGAGGAAGAACTCAAGAATATATTTTCACCCTTGCCTTTTGCTTTCATTCCACATATCTCCCTAGGTCTCCCCCCTCTGGACTGGGTTGCAATCATGCAAAACACTGTCGGTGAAAATGCACGAAGTCTTCTTTCTACGACAGCAAGTGGCAGCAGTAGCCTACTGTCCTCTGTATCGTTTGATGCAGCCAGAAAGTCAATAATCCTTTTCATGCCAGGTTTTGAGAAGTCAGAGATAAAGCTATATCAGTACAGAGGAGGATCAGAGTTATTAGTGGAAGCCGGGGATCAAAGACGTGTAATTCATCTGCCTTCTAAAATTCAAGGGAAGGTTGGAGGTGCCAAGTTCATAGACAGAAGTCTTGTAATCACAATGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArsA_ATPase

Protein Analysis

458

Amino Acids

49.69

Weight (kDa)

8.9

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArsA_ATPase	PF02374	57 - 239	1.4e-12	Anion-transporting ATPase
ArsA_HSP20	PF17886	399 - 457	1.4e-12	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26090
fragaria_vesca	FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200
malus_domestica	MD13G1047700.v1.1
prunus_persica	Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435961
rosa_laevigata	RLG00000006545
rosa_multiflora	Rmu_sc0018865.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377130
rosa_rugosa	Rorug04G0290800 Rorug04G0290900
rosa_samantha	Rh4AG345200 Rh4BG354100 Rh4CG368600 Rh4DG347900
rosa_wichuraiana	Rw4G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1334
AciI	CCGC	3 cut(s)	67, 134, 507
AclWI	GGATC	5 cut(s)	281, 488, 501, 1264, 1290
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	4 cut(s)	444, 575, 854, 1314
AfaI	GTAC	2 cut(s)	656, 1247
AfiI	CCNNNNNNNGG	3 cut(s)	122, 874, 1072
AflIII	ACRYGT	2 cut(s)	263, 1291
AgsI	TTSAA	7 cut(s)	371, 400, 452, 772, 809, 985, 1319
AjiI	CACGTC	1 cut(s)	1292
AjnI	CCWGG	2 cut(s)	484, 1210
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	5 cut(s)	406, 472, 606, 938, 1237
AluI	AGCT	5 cut(s)	406, 472, 606, 938, 1237
Alw21I	GWGCWC	2 cut(s)	90, 608
Alw26I	GTCTC	1 cut(s)	1067
Alw44I	GTGCAC	1 cut(s)	86
AlwI	GGATC	5 cut(s)	281, 488, 501, 1264, 1290
AoxI	GGCC	1 cut(s)	705
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	7 cut(s)	230, 342, 403, 635, 861, 1146, 1181
ApoI	RAATTY	4 cut(s)	444, 575, 854, 1314
AspA2I	CCTAGG	1 cut(s)	1057
AspS9I	GGNCC	3 cut(s)	392, 710, 877
AsuC2I	CCSGG	1 cut(s)	1279
AsuHPI	GGTGA	4 cut(s)	283, 966, 1014, 1118
AvaII	GGWCC	3 cut(s)	392, 710, 877
AvrII	CCTAGG	1 cut(s)	1057
BaeGI	GKGCMC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	1334
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	2 cut(s)	135, 1115
Bbv12I	GWGCWC	2 cut(s)	90, 608
BbvI	GCAGC	7 cut(s)	217, 354, 415, 647, 848, 1158, 1193
BccI	CCATC	5 cut(s)	124, 484, 590, 697, 974
BciT130I	CCWGG	2 cut(s)	486, 1212
BcnI	CCSGG	1 cut(s)	1279
BcoDI	GTCTC	1 cut(s)	1067
BfaI	CTAG	2 cut(s)	389, 1058
BisI	GCNGC	8 cut(s)	135, 231, 343, 404, 636, 862, 1147, 1182
BlnI	CCTAGG	1 cut(s)	1057
BlsI	GCNGC	8 cut(s)	136, 232, 344, 405, 637, 863, 1148, 1183
Bme1390I	CCNGG	3 cut(s)	486, 1212, 1279
Bme18I	GGWCC	3 cut(s)	392, 710, 877
BmgBI	CACGTC	1 cut(s)	1292
BmgT120I	GGNCC	3 cut(s)	392, 710, 877
BmiI	GGNNCC	4 cut(s)	127, 495, 879, 1336
BmrFI	CCNGG	3 cut(s)	486, 1212, 1279
BmrI	ACTGGG	3 cut(s)	17, 77, 1087
BmsI	GCATC	4 cut(s)	409, 902, 980, 1168
BmuI	ACTGGG	3 cut(s)	17, 77, 1087
BoxI	GACNNNNGTC	1 cut(s)	1353
BpiI	GAAGAC	2 cut(s)	135, 1115
BpmI	CTGGAG	2 cut(s)	315, 975
Bpu10I	CCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	539, 992
BpuMI	CCSGG	1 cut(s)	1279
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	5 cut(s)	129, 485, 609, 1057, 1278
BsaXI	ACNNNNNCTCC	2 cut(s)	812, 842
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 874, 1072
Bse118I	RCCGGY	2 cut(s)	638, 707
Bse1I	ACTGG	4 cut(s)	23, 83, 332, 1082
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	486, 1212
BseDI	CCNNGG	5 cut(s)	129, 485, 609, 1057, 1278
BseGI	GGATG	4 cut(s)	495, 630, 708, 739
BseLI	CCNNNNNNNGG	3 cut(s)	122, 874, 1072
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	5 cut(s)	141, 288, 672, 736, 855
BseNI	ACTGG	4 cut(s)	23, 83, 332, 1082
BseRI	GAGGAG	1 cut(s)	1266
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	7 cut(s)	217, 354, 415, 647, 848, 1158, 1193
BseYI	CCCAGC	1 cut(s)	234
BsgI	GTGCAG	2 cut(s)	654, 807
BshFI	GGCC	1 cut(s)	707
BshNI	GGYRCC	1 cut(s)	1334
BsiHKAI	GWGCWC	2 cut(s)	90, 608
BsiSI	CCGG	3 cut(s)	639, 708, 1278
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	3 cut(s)	122, 874, 1072
BsmAI	GTCTC	1 cut(s)	1067
BsmFI	GGGAC	1 cut(s)	812
BsnI	GGCC	1 cut(s)	707
Bso31I	GGTCTC	1 cut(s)	1067
Bsp1286I	GDGCHC	2 cut(s)	90, 608
Bsp143I	GATC	5 cut(s)	286, 493, 691, 1256, 1282
BspACI	CCGC	3 cut(s)	67, 134, 507
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	5 cut(s)	142, 289, 673, 735, 854
BspLI	GGNNCC	4 cut(s)	127, 495, 879, 1336
BspPI	GGATC	5 cut(s)	281, 488, 501, 1264, 1290
BspQI	GCTCTTC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	1334
BspTNI	GGTCTC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	638, 707
BsrI	ACTGG	4 cut(s)	23, 83, 332, 1082
BssAI	RCCGGY	2 cut(s)	638, 707
BssECI	CCNNGG	5 cut(s)	129, 485, 609, 1057, 1278
BssMI	GATC	5 cut(s)	286, 493, 691, 1256, 1282
BssT1I	CCWWGG	2 cut(s)	129, 1057
Bst2UI	CCWGG	2 cut(s)	486, 1212
Bst4CI	ACNGT	3 cut(s)	803, 1102, 1161
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	3 cut(s)	253, 414, 479
BstDEI	CTNAG	7 cut(s)	150, 297, 362, 620, 681, 722, 841
BstF5I	GGATG	4 cut(s)	495, 630, 708, 739
BstKTI	GATC	5 cut(s)	289, 496, 694, 1259, 1285
BstMAI	GTCTC	1 cut(s)	1067
BstMBI	GATC	5 cut(s)	286, 493, 691, 1256, 1282
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 409, 478, 644, 1152
BstNI	CCWGG	2 cut(s)	486, 1212
BstNSI	RCATGY	1 cut(s)	267
BstPAI	GACNNNNGTC	1 cut(s)	1353
BstSCI	CCNGG	3 cut(s)	484, 1210, 1277
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	7 cut(s)	217, 354, 415, 647, 848, 1158, 1193
BstV2I	GAAGAC	2 cut(s)	135, 1115
BstX2I	RGATCY	2 cut(s)	286, 493
BstXI	CCANNNNNNTGG	1 cut(s)	941
BstYI	RGATCY	2 cut(s)	286, 493
BsuRI	GGCC	1 cut(s)	707
BtgZI	GCGATG	1 cut(s)	952
BtrI	CACGTC	1 cut(s)	1292
BtsCI	GGATG	4 cut(s)	495, 630, 708, 739
BtsIMutI	CAGTG	3 cut(s)	90, 808, 1098
Cac8I	GCNNGC	3 cut(s)	253, 414, 479
Cfr10I	RCCGGY	2 cut(s)	638, 707
Cfr13I	GGNCC	3 cut(s)	392, 710, 877
Csp6I	GTAC	2 cut(s)	655, 1246
CviAII	CATG	4 cut(s)	264, 742, 1090, 1207
CviQI	GTAC	2 cut(s)	655, 1246
DdeI	CTNAG	7 cut(s)	150, 297, 362, 620, 681, 722, 841
DpnI	GATC	5 cut(s)	288, 495, 693, 1258, 1284
DpnII	GATC	5 cut(s)	286, 493, 691, 1256, 1282
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	606
Eco130I	CCWWGG	2 cut(s)	129, 1057
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	1067
Eco47I	GGWCC	3 cut(s)	392, 710, 877
Eco53kI	GAGCTC	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	484, 1210
EcoT14I	CCWWGG	2 cut(s)	129, 1057
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	129, 1057
FaeI	CATG	4 cut(s)	267, 745, 1093, 1210
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	4 cut(s)	263, 741, 1089, 1206
Fnu4HI	GCNGC	8 cut(s)	135, 231, 343, 404, 636, 862, 1147, 1182
FokI	GGATG	4 cut(s)	502, 637, 715, 746
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	8 cut(s)	135, 231, 343, 404, 636, 862, 1147, 1182
FspBI	CTAG	2 cut(s)	389, 1058
GluI	GCNGC	8 cut(s)	135, 231, 343, 404, 636, 862, 1147, 1182
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	2 cut(s)	315, 975
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	3 cut(s)	639, 708, 1278
Hin1II	CATG	4 cut(s)	267, 745, 1093, 1210
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	155, 992
HpaII	CCGG	3 cut(s)	639, 708, 1278
HphI	GGTGA	4 cut(s)	283, 966, 1014, 1118
Hpy166II	GTNNAC	4 cut(s)	88, 168, 761, 944
Hpy188I	TCNGA	7 cut(s)	151, 610, 725, 844, 997, 1228, 1261
Hpy188III	TCNNGA	5 cut(s)	123, 449, 954, 1009, 1073
Hpy8I	GTNNAC	4 cut(s)	88, 168, 761, 944
HpyAV	CCTTC	6 cut(s)	52, 314, 446, 723, 1317, 1318
HpyCH4III	ACNGT	3 cut(s)	803, 1102, 1161
HpyCH4IV	ACGT	1 cut(s)	1291
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 409, 478, 644, 1152
HpyF3I	CTNAG	7 cut(s)	150, 297, 362, 620, 681, 722, 841
HpySE526I	ACGT	1 cut(s)	1291
Hsp92II	CATG	4 cut(s)	267, 745, 1093, 1210
Kzo9I	GATC	5 cut(s)	286, 493, 691, 1256, 1282
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	2 cut(s)	611, 956
Lsp1109I	GCAGC	7 cut(s)	217, 354, 415, 647, 848, 1158, 1193
LweI	GCATC	4 cut(s)	409, 902, 980, 1168
MaeI	CTAG	2 cut(s)	389, 1058
MaeII	ACGT	1 cut(s)	1291
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	5 cut(s)	288, 495, 693, 1258, 1284
MboI	GATC	5 cut(s)	286, 493, 691, 1256, 1282
MboII	GAAGA	4 cut(s)	135, 479, 1013, 1115
MflI	RGATCY	2 cut(s)	286, 493
MhlI	GDGCHC	2 cut(s)	90, 608
MluCI	AATT	9 cut(s)	318, 444, 575, 585, 854, 897, 980, 1296, 1314
MmeI	TCCRAC	3 cut(s)	798, 855, 1309
MseI	TTAA	2 cut(s)	429, 659
MslI	CAYNNNNRTG	2 cut(s)	380, 587
MspI	CCGG	3 cut(s)	639, 708, 1278
MspR9I	CCNGG	3 cut(s)	486, 1212, 1279
MvaI	CCWGG	2 cut(s)	486, 1212
MwoI	GCNNNNNNNGC	5 cut(s)	227, 409, 478, 644, 1152
NciI	CCSGG	1 cut(s)	1279
NdeII	GATC	5 cut(s)	286, 493, 691, 1256, 1282
NlaIII	CATG	4 cut(s)	267, 745, 1093, 1210
NlaIV	GGNNCC	4 cut(s)	127, 495, 879, 1336
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	267
PciI	ACATGT	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	155, 992
PkrI	GCNGC	8 cut(s)	136, 232, 344, 405, 637, 863, 1148, 1183
PpuMI	RGGWCCY	1 cut(s)	392
PscI	ACATGT	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	1353
Psp124BI	GAGCTC	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	484, 1210
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	484, 1210
PspN4I	GGNNCC	4 cut(s)	127, 495, 879, 1336
PspPI	GGNCC	3 cut(s)	392, 710, 877
PspPPI	RGGWCCY	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	286, 493
RsaI	GTAC	2 cut(s)	656, 1247
RsaNI	GTAC	2 cut(s)	655, 1246
RseI	CAYNNNNRTG	2 cut(s)	380, 587
SacI	GAGCTC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	429, 659
SatI	GCNGC	8 cut(s)	135, 231, 343, 404, 636, 862, 1147, 1182
Sau3AI	GATC	5 cut(s)	286, 493, 691, 1256, 1282
Sau96I	GGNCC	3 cut(s)	392, 710, 877
ScrFI	CCNGG	3 cut(s)	486, 1212, 1279
SduI	GDGCHC	2 cut(s)	90, 608
SfaNI	GCATC	4 cut(s)	409, 902, 980, 1168
SinI	GGWCC	3 cut(s)	392, 710, 877
SmiMI	CAYNNNNRTG	2 cut(s)	380, 587
SmlI	CTYRAG	2 cut(s)	518, 1007
SmoI	CTYRAG	2 cut(s)	518, 1007
Sse9I	AATT	9 cut(s)	318, 444, 575, 585, 854, 897, 980, 1296, 1314
SsiI	CCGC	3 cut(s)	67, 134, 507
SspMI	CTAG	2 cut(s)	389, 1058
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	3 cut(s)	484, 1210, 1277
StyI	CCWWGG	2 cut(s)	129, 1057
TaaI	ACNGT	3 cut(s)	803, 1102, 1161
TaiI	ACGT	1 cut(s)	1294
TaqI	TCGA	1 cut(s)	424
TasI	AATT	9 cut(s)	318, 444, 575, 585, 854, 897, 980, 1296, 1314
TatI	WGTACW	2 cut(s)	654, 1245
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	155, 992
Tru1I	TTAA	2 cut(s)	429, 659
Tru9I	TTAA	2 cut(s)	429, 659
TscAI	CASTG	3 cut(s)	90, 808, 1105
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	7 cut(s)	230, 342, 403, 635, 861, 1146, 1181
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	5 cut(s)	750, 1030, 1195, 1289, 1333
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	3 cut(s)	90, 808, 1105
VneI	GTGCAC	1 cut(s)	86
VpaK11BI	GGWCC	3 cut(s)	392, 710, 877
XapI	RAATTY	4 cut(s)	444, 575, 854, 1314
XceI	RCATGY	1 cut(s)	267
XmaJI	CCTAGG	1 cut(s)	1057
XspI	CTAG	2 cut(s)	389, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.