Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009127

Physical Location & Seq

Genomic Coordinates Forward (+)

57700380 .. 57703109

Gene Structure 2730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCTCTGCTTACCTTTTGCCCAGTCCTATCTCCAAACTCCTTCCCTTATTCCTCTGTCCTAAACCGCACAACACCAAACCTAGTACACACGACAAGAACACGAACCAGAACACCATCATCAGGAACCAAAGCTGTGACCTTGGCGGCTTCGTCTTCGTCTGAGGATTCTCACAAGTCAACAAAGTTGGTCACTTTCTTGGGGAAAGGTGGGTCTGGCAAGACCACCTCTGCCATTTTCGCTGCCCAGCATTTTGCAATGGCTGGCTTTAGCACATGTTTGGTGATACATACACAAGATCCCTCTGCTGAGTTCCTTCTAAACTGCAAAATTGGAACGTCTCCAGTTCTATGCAGCGATAATCTTTCGGCTCTTAGGTTTGAAACCACCAAAATGCTTCTAGGACCTTTGAAGCAGCTAAAGCAAGCAGATGCTCGACTTAATATGACGCAAGGAGTTCTTGAAGGGGTAGTTTTCTTTTCAATTGAGCAGATTTTTGGAGAAGAGCTTGGCGTGCTTCCTGGGATGGATCCTATTTTTTCCGCATTAGCACTTGAGAGGCTTGTGGGGTTCTTTGGGAATGTGGCTCAAAGAAACCACGATAAACATAAATTTGACATAATTGTGTATGATGGTATGAGCTCCGAGGAAATGCTAAGGATGATAAGTGCAGCCGGTAAAGCAAGGTTGTACTTAAAATATCTACGGAATGTGGCTGAGAAAACTGATCTTGGGAGGATGGCCGGTCCTTCGCTTCTCAGACTTGTGGATGATGCCATGAGTATAACCAGCAGTAAACCTCTTTTCAATGGGAAAATGAGTGCAGAAATATGGGACAGTGTTGAAAAAATGTTGGAGAGAGGGTCGTCTGCTTTCTCAGAACCTCAAAAATTTGGCTGCTTCCTAATGTTGGACCCAGACAATCCAGCATCTATTAGTTCTGCATTACGATATTGGGGTTGCACGATCCAAGCTGGTGGACAGATTTGTGGAGCATTTGCCATCGCATCACCAAAATTGAATACAGAGGAAGAACTCAAGAATATATTTTCACCCTTGCCTTTTGCTTTCATTCCACATATCTCCCTAGCCAGGAAGTCAATAATCCTTTTCATGCCAGGTTTTGACAAGTCAGAGATCAAGCTATATCAGTACAGAGGAGGATCAGAGTTATTAGTGGAAGCCGGGGATCAAAGACGTGTAATTCATCTGCCTTCTAAAATTCAAGGGAAGGTTGGAGGTGCCAAGTTCATAGACAGAAGTCTTGTAATCACAATGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArsA_ATPase

Protein Analysis

427

Amino Acids

46.62

Weight (kDa)

9.13

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArsA_ATPase	PF02374	61 - 251	1.8e-11	Anion-transporting ATPase
ArsA_HSP20	PF17886	368 - 426	8.5e-13	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26090
fragaria_vesca	FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200
malus_domestica	MD13G1047700.v1.1
prunus_persica	Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435961
rosa_laevigata	RLG00000006545
rosa_multiflora	Rmu_sc0018865.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377130
rosa_rugosa	Rorug04G0290800 Rorug04G0290900
rosa_samantha	Rh4AG345200 Rh4BG354100 Rh4CG368600 Rh4DG347900
rosa_wichuraiana	Rw4G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1241
AciI	CCGC	3 cut(s)	67, 146, 543
AclWI	GGATC	6 cut(s)	293, 524, 537, 961, 1171, 1197
AcoI	YGGCCR	1 cut(s)	741
AcsI	RAATTY	3 cut(s)	611, 890, 1221
AfaI	GTAC	3 cut(s)	87, 692, 1154
AfiI	CCNNNNNNNGG	3 cut(s)	122, 910, 1092
AflIII	ACRYGT	2 cut(s)	275, 1198
AgsI	TTSAA	8 cut(s)	383, 412, 464, 483, 808, 845, 1021, 1226
AjiI	CACGTC	1 cut(s)	1199
AjnI	CCWGG	3 cut(s)	520, 1091, 1117
AluBI	AGCT	6 cut(s)	134, 418, 508, 642, 974, 1144
AluI	AGCT	6 cut(s)	134, 418, 508, 642, 974, 1144
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	6 cut(s)	293, 524, 537, 961, 1171, 1197
AoxI	GGCC	1 cut(s)	741
ApeKI	GCWGC	5 cut(s)	242, 354, 415, 671, 897
ApoI	RAATTY	3 cut(s)	611, 890, 1221
AspS9I	GGNCC	3 cut(s)	404, 746, 913
AsuC2I	CCSGG	1 cut(s)	1186
AsuHPI	GGTGA	3 cut(s)	295, 1002, 1044
AvaII	GGWCC	3 cut(s)	404, 746, 913
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	1241
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	5 cut(s)	229, 366, 427, 683, 884
BccI	CCATC	5 cut(s)	124, 520, 626, 733, 1010
BciT130I	CCWGG	3 cut(s)	522, 1093, 1119
BcnI	CCSGG	1 cut(s)	1186
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	3 cut(s)	83, 401, 1088
BisI	GCNGC	6 cut(s)	147, 243, 355, 416, 672, 898
BlsI	GCNGC	6 cut(s)	148, 244, 356, 417, 673, 899
Bme1390I	CCNGG	4 cut(s)	522, 1093, 1119, 1186
Bme18I	GGWCC	3 cut(s)	404, 746, 913
BmgBI	CACGTC	1 cut(s)	1199
BmgT120I	GGNCC	3 cut(s)	404, 746, 913
BmiI	GGNNCC	4 cut(s)	127, 531, 915, 1243
BmrFI	CCNGG	4 cut(s)	522, 1093, 1119, 1186
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	4 cut(s)	421, 763, 938, 1016
BmuI	ACTGGG	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	1260
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	575, 1022
BpuMI	CCSGG	1 cut(s)	1186
BsaJI	CCNNGG	4 cut(s)	141, 521, 645, 1185
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 910, 1092
Bse118I	RCCGGY	2 cut(s)	674, 743
Bse1I	ACTGG	2 cut(s)	23, 344
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	522, 1093, 1119
BseDI	CCNNGG	4 cut(s)	141, 521, 645, 1185
BseGI	GGATG	4 cut(s)	531, 666, 744, 775
BseLI	CCNNNNNNNGG	3 cut(s)	122, 910, 1092
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	5 cut(s)	153, 300, 708, 772, 891
BseNI	ACTGG	2 cut(s)	23, 344
BseRI	GAGGAG	1 cut(s)	1173
BseXI	GCAGC	5 cut(s)	229, 366, 427, 683, 884
BseYI	CCCAGC	1 cut(s)	246
BsgI	GTGCAG	2 cut(s)	690, 843
BshFI	GGCC	1 cut(s)	743
BshNI	GGYRCC	1 cut(s)	1241
BsiHKAI	GWGCWC	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	675, 744, 1185
BslFI	GGGAC	1 cut(s)	848
BslI	CCNNNNNNNGG	3 cut(s)	122, 910, 1092
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	848
BsnI	GGCC	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
BspACI	CCGC	3 cut(s)	67, 146, 543
BspANI	GGCC	1 cut(s)	743
BspCNI	CTCAG	5 cut(s)	154, 301, 709, 771, 890
BspLI	GGNNCC	4 cut(s)	127, 531, 915, 1243
BspPI	GGATC	6 cut(s)	293, 524, 537, 961, 1171, 1197
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	1241
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	2 cut(s)	674, 743
BsrI	ACTGG	2 cut(s)	23, 344
BssAI	RCCGGY	2 cut(s)	674, 743
BssECI	CCNNGG	4 cut(s)	141, 521, 645, 1185
BssMI	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	522, 1093, 1119
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	265, 426, 515
BstDEI	CTNAG	7 cut(s)	162, 309, 374, 656, 717, 758, 877
BstF5I	GGATG	4 cut(s)	531, 666, 744, 775
BstKTI	GATC	7 cut(s)	301, 532, 730, 969, 1140, 1166, 1192
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 421, 514, 680
BstNI	CCWGG	3 cut(s)	522, 1093, 1119
BstNSI	RCATGY	1 cut(s)	279
BstPAI	GACNNNNGTC	1 cut(s)	1260
BstSCI	CCNGG	4 cut(s)	520, 1091, 1117, 1184
BstV1I	GCAGC	5 cut(s)	229, 366, 427, 683, 884
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	298, 529
BstXI	CCANNNNNNTGG	1 cut(s)	977
BstYI	RGATCY	2 cut(s)	298, 529
BsuRI	GGCC	1 cut(s)	743
BtgZI	GCGATG	1 cut(s)	988
BtrI	CACGTC	1 cut(s)	1199
BtsCI	GGATG	4 cut(s)	531, 666, 744, 775
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	3 cut(s)	265, 426, 515
Cfr10I	RCCGGY	2 cut(s)	674, 743
Cfr13I	GGNCC	3 cut(s)	404, 746, 913
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	3 cut(s)	86, 691, 1153
CviAII	CATG	3 cut(s)	276, 778, 1114
CviQI	GTAC	3 cut(s)	86, 691, 1153
DdeI	CTNAG	7 cut(s)	162, 309, 374, 656, 717, 758, 877
DpnI	GATC	7 cut(s)	300, 531, 729, 968, 1139, 1165, 1191
DpnII	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
EaeI	YGGCCR	1 cut(s)	741
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	404, 746, 913
Eco53kI	GAGCTC	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	3 cut(s)	520, 1091, 1117
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	3 cut(s)	279, 781, 1117
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	3 cut(s)	275, 777, 1113
Fnu4HI	GCNGC	6 cut(s)	147, 243, 355, 416, 672, 898
FokI	GGATG	4 cut(s)	538, 673, 751, 782
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	6 cut(s)	147, 243, 355, 416, 672, 898
FspBI	CTAG	3 cut(s)	83, 401, 1088
GluI	GCNGC	6 cut(s)	147, 243, 355, 416, 672, 898
GsaI	CCCAGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	743
HapII	CCGG	3 cut(s)	675, 744, 1185
HgaI	GACGC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	279, 781, 1117
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	3 cut(s)	675, 744, 1185
HphI	GGTGA	3 cut(s)	295, 1002, 1044
Hpy166II	GTNNAC	4 cut(s)	88, 180, 797, 980
Hpy188I	TCNGA	6 cut(s)	163, 646, 761, 880, 1135, 1168
Hpy188III	TCNNGA	3 cut(s)	123, 461, 1039
Hpy8I	GTNNAC	4 cut(s)	88, 180, 797, 980
HpyAV	CCTTC	6 cut(s)	52, 326, 458, 759, 1224, 1225
HpyCH4III	ACNGT	1 cut(s)	839
HpyCH4IV	ACGT	2 cut(s)	338, 1198
HpyCH4V	TGCA	7 cut(s)	257, 327, 354, 671, 824, 944, 963
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 421, 514, 680
HpyF3I	CTNAG	7 cut(s)	162, 309, 374, 656, 717, 758, 877
HpySE526I	ACGT	2 cut(s)	338, 1198
Hsp92II	CATG	3 cut(s)	279, 781, 1117
Kzo9I	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	647, 992
Lsp1109I	GCAGC	5 cut(s)	229, 366, 427, 683, 884
LweI	GCATC	4 cut(s)	421, 763, 938, 1016
MaeI	CTAG	3 cut(s)	83, 401, 1088
MaeII	ACGT	2 cut(s)	338, 1198
MaeIII	GTNAC	2 cut(s)	136, 190
MalI	GATC	7 cut(s)	300, 531, 729, 968, 1139, 1165, 1191
MboI	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
MboII	GAAGA	3 cut(s)	147, 515, 1043
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	2 cut(s)	298, 529
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	8 cut(s)	330, 483, 611, 621, 890, 1016, 1203, 1221
MmeI	TCCRAC	3 cut(s)	834, 891, 1216
MseI	TTAA	2 cut(s)	441, 695
MslI	CAYNNNNRTG	2 cut(s)	392, 623
MspI	CCGG	3 cut(s)	675, 744, 1185
MspR9I	CCNGG	4 cut(s)	522, 1093, 1119, 1186
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	3 cut(s)	522, 1093, 1119
MwoI	GCNNNNNNNGC	4 cut(s)	239, 421, 514, 680
NciI	CCSGG	1 cut(s)	1186
NdeII	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
NlaIII	CATG	3 cut(s)	279, 781, 1117
NlaIV	GGNNCC	4 cut(s)	127, 531, 915, 1243
NmuCI	GTSAC	2 cut(s)	136, 190
NspI	RCATGY	1 cut(s)	279
PciI	ACATGT	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	148, 244, 356, 417, 673, 899
PpuMI	RGGWCCY	1 cut(s)	404
PscI	ACATGT	1 cut(s)	275
PshAI	GACNNNNGTC	1 cut(s)	1260
Psp124BI	GAGCTC	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	3 cut(s)	520, 1091, 1117
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	3 cut(s)	520, 1091, 1117
PspN4I	GGNNCC	4 cut(s)	127, 531, 915, 1243
PspPI	GGNCC	3 cut(s)	404, 746, 913
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	2 cut(s)	298, 529
RsaI	GTAC	3 cut(s)	87, 692, 1154
RsaNI	GTAC	3 cut(s)	86, 691, 1153
RseI	CAYNNNNRTG	2 cut(s)	392, 623
SacI	GAGCTC	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	441, 695
SatI	GCNGC	6 cut(s)	147, 243, 355, 416, 672, 898
Sau3AI	GATC	7 cut(s)	298, 529, 727, 966, 1137, 1163, 1189
Sau96I	GGNCC	3 cut(s)	404, 746, 913
ScrFI	CCNGG	4 cut(s)	522, 1093, 1119, 1186
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	4 cut(s)	421, 763, 938, 1016
SinI	GGWCC	3 cut(s)	404, 746, 913
SmiMI	CAYNNNNRTG	2 cut(s)	392, 623
SmlI	CTYRAG	2 cut(s)	554, 1037
SmoI	CTYRAG	2 cut(s)	554, 1037
Sse9I	AATT	8 cut(s)	330, 483, 611, 621, 890, 1016, 1203, 1221
SsiI	CCGC	3 cut(s)	67, 146, 543
SspMI	CTAG	3 cut(s)	83, 401, 1088
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	4 cut(s)	520, 1091, 1117, 1184
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	839
TaiI	ACGT	2 cut(s)	341, 1201
TaqI	TCGA	1 cut(s)	436
TasI	AATT	8 cut(s)	330, 483, 611, 621, 890, 1016, 1203, 1221
TatI	WGTACW	3 cut(s)	85, 690, 1152
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	441, 695
Tru9I	TTAA	2 cut(s)	441, 695
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	2 cut(s)	136, 190
TseI	GCWGC	5 cut(s)	242, 354, 415, 671, 897
Tsp45I	GTSAC	2 cut(s)	136, 190
TspDTI	ATGAA	4 cut(s)	1060, 1102, 1196, 1240
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	1 cut(s)	844
VpaK11BI	GGWCC	3 cut(s)	404, 746, 913
XapI	RAATTY	3 cut(s)	611, 890, 1221
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	3 cut(s)	83, 401, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.