Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009127

Physical Location & Seq

Genomic Coordinates Reverse (-)

46511829 .. 46512572

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGATCATTTCAATATCTCTACCACTACTAACCATATTTATCATTCAAAATGTGTTTCTTCCAATAAGCCATTGCAGGTCTGATCTCATTGACCAAACGTGCAAACAAACACCGAACTACAATCTTTGTGTTTCTTCTCTTAAATCGAATCCTCGAAGCTCCGCTGCTGATGTCAAGGGCCTAGCCATCATAATGGTCGAGGTGGTTAAGTCCAAGGCAAATGATACTCTGAACAAAATATGGGCAGAGCTTCTTAGGCATGAAGACCCCGTAATCAGAAATTGCTATGATCATTACGGTTACATGGTGGGAGCTTTTATCCCAGACATCTATGGAGATTTAACTTCAAGAGGTTTAGGTGGTAGGTTTGTACGTTACAACCCTGCACAGGCAGAGCGACGCTTGCACAATGATGTTATCCTACGGGTTGATCATTGTCAGAATGGTTTTGGTCAAGGCCGCCGATCTCCATTCGCCAAGGAAAACAAAGCTACCCGTGAAGCAGCGGTTGTGGCTGCAGCAATTGTTTGGATATTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArsA_ATPase

Protein Analysis

181

Amino Acids

20.28

Weight (kDa)

9.18

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	29 - 173	7e-15	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26090
fragaria_vesca	FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200
malus_domestica	MD13G1047700.v1.1
prunus_persica	Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435961
rosa_laevigata	RLG00000006545
rosa_multiflora	Rmu_sc0018865.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377130
rosa_rugosa	Rorug04G0290800 Rorug04G0290900
rosa_samantha	Rh4AG345200 Rh4BG354100 Rh4CG368600 Rh4DG347900
rosa_wichuraiana	Rw4G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AciI	CCGC	3 cut(s)	165, 463, 509
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	15, 50, 351
AluBI	AGCT	4 cut(s)	162, 253, 317, 494
AluI	AGCT	4 cut(s)	162, 253, 317, 494
AoxI	GGCC	2 cut(s)	181, 460
ApeKI	GCWGC	4 cut(s)	167, 506, 518, 521
AspS9I	GGNCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	154, 505, 518, 533
BccI	CCATC	1 cut(s)	197
BclI	TGATCA	2 cut(s)	292, 433
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	5 cut(s)	168, 463, 507, 519, 522
BlsI	GCNGC	5 cut(s)	169, 464, 508, 520, 523
BmgT120I	GGNCC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	539
BsaJI	CCNNGG	2 cut(s)	216, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	216, 480
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	154, 505, 518, 533
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	183, 462
BslI	CCNNNNNNNGG	1 cut(s)	391
BsnI	GGCC	2 cut(s)	183, 462
Bsp143I	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
BspACI	CCGC	3 cut(s)	165, 463, 509
BspANI	GGCC	2 cut(s)	183, 462
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	216, 480
BssMI	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
BssT1I	CCWWGG	2 cut(s)	216, 480
Bst4CI	ACNGT	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	257
BstKTI	GATC	6 cut(s)	9, 88, 295, 436, 470, 543
BstMBI	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 406, 515
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	4 cut(s)	154, 505, 518, 533
BstV2I	GAAGAC	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	183, 462
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	2 cut(s)	263, 307
CviJI	RGCY	9 cut(s)	72, 162, 183, 188, 253, 317, 462, 494, 518
CviKI_1	RGCY	9 cut(s)	72, 162, 183, 188, 253, 317, 462, 494, 518
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	6 cut(s)	8, 87, 294, 435, 469, 542
DpnII	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
Eco130I	CCWWGG	2 cut(s)	216, 480
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	216, 480
ErhI	CCWWGG	2 cut(s)	216, 480
FaeI	CATG	2 cut(s)	266, 310
FaiI	YATR	7 cut(s)	38, 194, 244, 264, 291, 308, 336
FatI	CATG	2 cut(s)	262, 306
FbaI	TGATCA	2 cut(s)	292, 433
Fnu4HI	GCNGC	5 cut(s)	168, 463, 507, 519, 522
Fsp4HI	GCNGC	5 cut(s)	168, 463, 507, 519, 522
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	5 cut(s)	168, 463, 507, 519, 522
HaeIII	GGCC	2 cut(s)	183, 462
HgaI	GACGC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	266, 310
HinfI	GANTC	1 cut(s)	151
Hpy188I	TCNGA	5 cut(s)	85, 234, 281, 444, 545
Hpy188III	TCNNGA	1 cut(s)	351
Hpy99I	CGWCG	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	101, 376
HpyCH4V	TGCA	5 cut(s)	78, 105, 389, 409, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 406, 515
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	2 cut(s)	101, 376
Hsp92II	CATG	2 cut(s)	266, 310
Ksp22I	TGATCA	2 cut(s)	292, 433
Kzo9I	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
LmnI	GCTCC	2 cut(s)	167, 314
LpnPI	CCDG	4 cut(s)	64, 339, 377, 399
Lsp1109I	GCAGC	4 cut(s)	154, 505, 518, 533
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	2 cut(s)	101, 376
MaeIII	GTNAC	2 cut(s)	302, 377
MalI	GATC	6 cut(s)	8, 87, 294, 435, 469, 542
MboI	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
MboII	GAAGA	4 cut(s)	16, 53, 129, 278
MfeI	CAATTG	1 cut(s)	525
MluCI	AATT	2 cut(s)	283, 525
MnlI	CCTC	3 cut(s)	165, 196, 347
MseI	TTAA	3 cut(s)	144, 210, 344
MslI	CAYNNNNRTG	2 cut(s)	194, 414
MspA1I	CMGCKG	2 cut(s)	167, 509
MunI	CAATTG	1 cut(s)	525
MwoI	GCNNNNNNNGC	3 cut(s)	259, 406, 515
NdeII	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
NlaIII	CATG	2 cut(s)	266, 310
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	169, 464, 508, 520, 523
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	523
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	2 cut(s)	194, 414
SaqAI	TTAA	3 cut(s)	144, 210, 344
SatI	GCNGC	5 cut(s)	168, 463, 507, 519, 522
Sau3AI	GATC	6 cut(s)	6, 85, 292, 433, 467, 540
Sau96I	GGNCC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	2 cut(s)	194, 414
Sse9I	AATT	2 cut(s)	283, 525
SsiI	CCGC	3 cut(s)	165, 463, 509
SspMI	CTAG	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	216, 480
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	104, 379
TaqI	TCGA	3 cut(s)	149, 157, 201
TasI	AATT	2 cut(s)	283, 525
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	144, 210, 344
Tru9I	TTAA	3 cut(s)	144, 210, 344
TseI	GCWGC	4 cut(s)	167, 506, 518, 521
TspDTI	ATGAA	2 cut(s)	17, 279
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.