Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009127

Physical Location & Seq

Genomic Coordinates Forward (+)

65389719 .. 65392229

Gene Structure 2511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG345200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCTCTGCTTACCTTTTGCCCAGTCCTACCTCCAAACTATTCCTCTGTCCTAAACCGCACAACACCAAACCTAGTACACACGACAAGAACAAGAACACGAACCAGAACACCATCATCAGGAACCAAAGCTGTGACCTTGGCGGCTTCGTCTTCGTCTGAGGATTCTCACAAGTCAACAAAGTTGGTCACTTTCTTGGGGAAAGGTGGGTCTGGCAAGACCACCTCTGCCATTTTCGCTGCCCAGCATTTTGCAATGGCTGGCTTTAGCACATGTTTGGTGATACATACACAAGATCCCTCTGCTGAGTTCCTTCTAAACTGCAAAATTGGAACATCTCCAGTTCTATGCAGCGATAACCTTTCGGCTCTTAGGTTTGAAACCACCAAAATGCTTCTAGGACCTTTGAAGCAGCTAAAGCAAGCAGATGCTCGACTTAATATGACACAAGGAGTTCTTGAAGGGATTTTTGGAGAAGAGCTTGGCGTGCTTCCTGGGATGGATCCTATTTTTTCCGCATTAGCACTTGAGAGGCTTGTGGGGTTCTTTGGGAATGTGGCTCAAAGAAACCATGATAAAGATAAATTTGACATAATTGTGTATGATGGTATGAGCTCCGAGGAAATGCTAAGGATGATAAGTGCAGCCGGAAAAGCAAGGTTGTACTTAAAATATCTACGGAATGTGGCTGAGAAAACTGATTTTGGGAGGATGGCCGGTCCTTCACTTCTCAGACTTGTGGATGAAGCCATGAGTATAACCAGCAGCAAACCTCTTTTCAATGGGAAAATGAGTGCAGAAATATGGGACAGTGTTGAAAAAATGTTGGAGAGAGGGTCGTCTGCTTTCTCAGAACCTCAAAATTTTGGCTGCTTCCTAATGTTGGACCCAGACAATCCAGCATCTATTAGTTCTGCATTACGATATTGGGGTTGCACGATCCAAGCTGGTGGACAGATTTCTGGAGCATTTGCCATCGCATCACCAAAATTGAATACAGAATCAGAGGAAGAACTCAAGAATATATTTTCACCCTTGCCTTTTGCTTTCATTCCACATATCCCCCTAGGTCTCCCCCCTCTGGACTGGGTTGCAATCATGCAAAACACTGTCGGTGAAAATGCACGAAGTCTTCTTTCTACGACAGCAAGTGGCAGCAGTAGCCTACTGTCCTCTGTGTCGTTTGATGCAGCCAGAAAGTCAATAATCCTTTTCATGCCAGGTTTTGACAAGTCAGAGATAAAGCTATATCAGTACAGAGGAGGATCAGAGTTATTAGTGGAAGCCGGGGATCAAAGACGTGTAATTCATCTGCCTTCTAAAATTCAAGGGAAGGTTGGAGGTGCCAAGTTCATAGACAGAAGACTTGTAATCACAATGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArsA_ATPase

Protein Analysis

461

Amino Acids

50.06

Weight (kDa)

9.01

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArsA_ATPase	PF02374	60 - 239	7.9e-13	Anion-transporting ATPase
ArsA_HSP20	PF17886	402 - 460	9.9e-13	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26090
fragaria_vesca	FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200 FvH4_4g28200
malus_domestica	MD13G1047700.v1.1
prunus_persica	Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1 Prupe.1G304300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435961
rosa_laevigata	RLG00000006545
rosa_multiflora	Rmu_sc0018865.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377130
rosa_rugosa	Rorug04G0290800 Rorug04G0290900
rosa_samantha	Rh4AG345200 Rh4BG354100 Rh4CG368600 Rh4DG347900
rosa_wichuraiana	Rw4G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1343
AciI	CCGC	3 cut(s)	58, 143, 516
AclWI	GGATC	6 cut(s)	290, 497, 510, 934, 1273, 1299
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	3 cut(s)	584, 862, 1323
AfaI	GTAC	3 cut(s)	78, 665, 1256
AfiI	CCNNNNNNNGG	3 cut(s)	119, 883, 1081
AflIII	ACRYGT	2 cut(s)	272, 1300
AgsI	TTSAA	7 cut(s)	380, 409, 461, 781, 818, 994, 1328
AjiI	CACGTC	1 cut(s)	1301
AjnI	CCWGG	2 cut(s)	493, 1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	6 cut(s)	131, 415, 481, 615, 947, 1246
AluI	AGCT	6 cut(s)	131, 415, 481, 615, 947, 1246
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	1 cut(s)	1076
AlwI	GGATC	6 cut(s)	290, 497, 510, 934, 1273, 1299
AoxI	GGCC	1 cut(s)	714
ApeKI	GCWGC	8 cut(s)	239, 351, 412, 644, 765, 870, 1155, 1190
ApoI	RAATTY	3 cut(s)	584, 862, 1323
AspA2I	CCTAGG	1 cut(s)	1066
AspS9I	GGNCC	3 cut(s)	401, 719, 886
AsuC2I	CCSGG	1 cut(s)	1288
AsuHPI	GGTGA	4 cut(s)	292, 975, 1023, 1127
AvaII	GGWCC	3 cut(s)	401, 719, 886
AvrII	CCTAGG	1 cut(s)	1066
BamHI	GGATCC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	1343
BanII	GRGCYC	1 cut(s)	617
BbsI	GAAGAC	3 cut(s)	144, 1124, 1369
Bbv12I	GWGCWC	1 cut(s)	617
BbvI	GCAGC	8 cut(s)	226, 363, 424, 656, 777, 857, 1167, 1202
BccI	CCATC	5 cut(s)	121, 493, 599, 706, 983
BciT130I	CCWGG	2 cut(s)	495, 1221
BcnI	CCSGG	1 cut(s)	1288
BcoDI	GTCTC	1 cut(s)	1076
BfaI	CTAG	3 cut(s)	74, 398, 1067
BisI	GCNGC	9 cut(s)	144, 240, 352, 413, 645, 766, 871, 1156, 1191
BlnI	CCTAGG	1 cut(s)	1066
BlsI	GCNGC	9 cut(s)	145, 241, 353, 414, 646, 767, 872, 1157, 1192
Bme1390I	CCNGG	3 cut(s)	495, 1221, 1288
Bme18I	GGWCC	3 cut(s)	401, 719, 886
BmgBI	CACGTC	1 cut(s)	1301
BmgT120I	GGNCC	3 cut(s)	401, 719, 886
BmiI	GGNNCC	4 cut(s)	124, 504, 888, 1345
BmrFI	CCNGG	3 cut(s)	495, 1221, 1288
BmrI	ACTGGG	2 cut(s)	17, 1096
BmsI	GCATC	4 cut(s)	418, 911, 989, 1177
BmuI	ACTGGG	2 cut(s)	17, 1096
BpiI	GAAGAC	3 cut(s)	144, 1124, 1369
BpmI	CTGGAG	2 cut(s)	324, 984
Bpu10I	CCTNAGC	1 cut(s)	629
BpuEI	CTTGAG	2 cut(s)	548, 1001
BpuMI	CCSGG	1 cut(s)	1288
BsaI	GGTCTC	1 cut(s)	1076
BsaJI	CCNNGG	5 cut(s)	138, 494, 618, 1066, 1287
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 883, 1081
Bse118I	RCCGGY	1 cut(s)	716
Bse1I	ACTGG	3 cut(s)	23, 341, 1091
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	495, 1221
BseDI	CCNNGG	5 cut(s)	138, 494, 618, 1066, 1287
BseGI	GGATG	4 cut(s)	504, 639, 717, 748
BseLI	CCNNNNNNNGG	3 cut(s)	119, 883, 1081
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	5 cut(s)	150, 297, 681, 745, 864
BseNI	ACTGG	3 cut(s)	23, 341, 1091
BseRI	GAGGAG	1 cut(s)	1275
BseXI	GCAGC	8 cut(s)	226, 363, 424, 656, 777, 857, 1167, 1202
BseYI	CCCAGC	1 cut(s)	243
BsgI	GTGCAG	2 cut(s)	663, 816
BshFI	GGCC	1 cut(s)	716
BshNI	GGYRCC	1 cut(s)	1343
BsiHKAI	GWGCWC	1 cut(s)	617
BsiSI	CCGG	3 cut(s)	648, 717, 1287
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	3 cut(s)	119, 883, 1081
BsmAI	GTCTC	1 cut(s)	1076
BsmFI	GGGAC	1 cut(s)	821
BsnI	GGCC	1 cut(s)	716
Bso31I	GGTCTC	1 cut(s)	1076
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	5 cut(s)	295, 502, 939, 1265, 1291
BspACI	CCGC	3 cut(s)	58, 143, 516
BspANI	GGCC	1 cut(s)	716
BspCNI	CTCAG	5 cut(s)	151, 298, 682, 744, 863
BspLI	GGNNCC	4 cut(s)	124, 504, 888, 1345
BspPI	GGATC	6 cut(s)	290, 497, 510, 934, 1273, 1299
BspQI	GCTCTTC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	1343
BspTNI	GGTCTC	1 cut(s)	1076
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	716
BsrI	ACTGG	3 cut(s)	23, 341, 1091
BssAI	RCCGGY	1 cut(s)	716
BssECI	CCNNGG	5 cut(s)	138, 494, 618, 1066, 1287
BssMI	GATC	5 cut(s)	295, 502, 939, 1265, 1291
BssT1I	CCWWGG	2 cut(s)	138, 1066
Bst2UI	CCWGG	2 cut(s)	495, 1221
Bst4CI	ACNGT	3 cut(s)	812, 1111, 1170
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	262, 423, 488
BstDEI	CTNAG	7 cut(s)	159, 306, 371, 629, 690, 731, 850
BstF5I	GGATG	4 cut(s)	504, 639, 717, 748
BstKTI	GATC	5 cut(s)	298, 505, 942, 1268, 1294
BstMAI	GTCTC	1 cut(s)	1076
BstMBI	GATC	5 cut(s)	295, 502, 939, 1265, 1291
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 418, 487, 653, 1161
BstNI	CCWGG	2 cut(s)	495, 1221
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	3 cut(s)	493, 1219, 1286
BstV1I	GCAGC	8 cut(s)	226, 363, 424, 656, 777, 857, 1167, 1202
BstV2I	GAAGAC	3 cut(s)	144, 1124, 1369
BstX2I	RGATCY	2 cut(s)	295, 502
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	2 cut(s)	295, 502
BsuRI	GGCC	1 cut(s)	716
BtgZI	GCGATG	1 cut(s)	961
BtrI	CACGTC	1 cut(s)	1301
BtsCI	GGATG	4 cut(s)	504, 639, 717, 748
BtsIMutI	CAGTG	2 cut(s)	817, 1107
Cac8I	GCNNGC	3 cut(s)	262, 423, 488
Cfr10I	RCCGGY	1 cut(s)	716
Cfr13I	GGNCC	3 cut(s)	401, 719, 886
Csp6I	GTAC	3 cut(s)	77, 664, 1255
CviAII	CATG	5 cut(s)	273, 572, 751, 1099, 1216
CviQI	GTAC	3 cut(s)	77, 664, 1255
DdeI	CTNAG	7 cut(s)	159, 306, 371, 629, 690, 731, 850
DpnI	GATC	5 cut(s)	297, 504, 941, 1267, 1293
DpnII	GATC	5 cut(s)	295, 502, 939, 1265, 1291
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Ecl136II	GAGCTC	1 cut(s)	615
Eco130I	CCWWGG	2 cut(s)	138, 1066
Eco24I	GRGCYC	1 cut(s)	617
Eco31I	GGTCTC	1 cut(s)	1076
Eco47I	GGWCC	3 cut(s)	401, 719, 886
Eco53kI	GAGCTC	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	493, 1219
EcoT14I	CCWWGG	2 cut(s)	138, 1066
EcoT38I	GRGCYC	1 cut(s)	617
ErhI	CCWWGG	2 cut(s)	138, 1066
FaeI	CATG	5 cut(s)	276, 575, 754, 1102, 1219
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	5 cut(s)	272, 571, 750, 1098, 1215
Fnu4HI	GCNGC	9 cut(s)	144, 240, 352, 413, 645, 766, 871, 1156, 1191
FokI	GGATG	4 cut(s)	511, 646, 724, 755
FriOI	GRGCYC	1 cut(s)	617
Fsp4HI	GCNGC	9 cut(s)	144, 240, 352, 413, 645, 766, 871, 1156, 1191
FspBI	CTAG	3 cut(s)	74, 398, 1067
GluI	GCNGC	9 cut(s)	144, 240, 352, 413, 645, 766, 871, 1156, 1191
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	2 cut(s)	324, 984
HaeIII	GGCC	1 cut(s)	716
HapII	CCGG	3 cut(s)	648, 717, 1287
Hin1II	CATG	5 cut(s)	276, 575, 754, 1102, 1219
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	164, 1001
HpaII	CCGG	3 cut(s)	648, 717, 1287
HphI	GGTGA	4 cut(s)	292, 975, 1023, 1127
Hpy166II	GTNNAC	3 cut(s)	79, 177, 953
Hpy188I	TCNGA	7 cut(s)	160, 619, 734, 853, 1006, 1237, 1270
Hpy188III	TCNNGA	5 cut(s)	120, 458, 963, 1018, 1082
Hpy8I	GTNNAC	3 cut(s)	79, 177, 953
HpyAV	CCTTC	5 cut(s)	323, 455, 732, 1326, 1327
HpyCH4III	ACNGT	3 cut(s)	812, 1111, 1170
HpyCH4IV	ACGT	1 cut(s)	1300
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 418, 487, 653, 1161
HpyF3I	CTNAG	7 cut(s)	159, 306, 371, 629, 690, 731, 850
HpySE526I	ACGT	1 cut(s)	1300
Hsp92II	CATG	5 cut(s)	276, 575, 754, 1102, 1219
Kzo9I	GATC	5 cut(s)	295, 502, 939, 1265, 1291
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	620, 965
Lsp1109I	GCAGC	8 cut(s)	226, 363, 424, 656, 777, 857, 1167, 1202
LweI	GCATC	4 cut(s)	418, 911, 989, 1177
MaeI	CTAG	3 cut(s)	74, 398, 1067
MaeII	ACGT	1 cut(s)	1300
MaeIII	GTNAC	2 cut(s)	133, 187
MalI	GATC	5 cut(s)	297, 504, 941, 1267, 1293
MboI	GATC	5 cut(s)	295, 502, 939, 1265, 1291
MboII	GAAGA	5 cut(s)	144, 488, 1022, 1124, 1374
MflI	RGATCY	2 cut(s)	295, 502
MhlI	GDGCHC	1 cut(s)	617
MluCI	AATT	7 cut(s)	327, 584, 594, 862, 989, 1305, 1323
MmeI	TCCRAC	3 cut(s)	807, 864, 1318
MseI	TTAA	2 cut(s)	438, 668
MslI	CAYNNNNRTG	2 cut(s)	389, 596
MspI	CCGG	3 cut(s)	648, 717, 1287
MspR9I	CCNGG	3 cut(s)	495, 1221, 1288
MvaI	CCWGG	2 cut(s)	495, 1221
MwoI	GCNNNNNNNGC	5 cut(s)	236, 418, 487, 653, 1161
NciI	CCSGG	1 cut(s)	1288
NdeII	GATC	5 cut(s)	295, 502, 939, 1265, 1291
NlaIII	CATG	5 cut(s)	276, 575, 754, 1102, 1219
NlaIV	GGNNCC	4 cut(s)	124, 504, 888, 1345
NmuCI	GTSAC	2 cut(s)	133, 187
NspI	RCATGY	1 cut(s)	276
PciI	ACATGT	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	164, 1001
PkrI	GCNGC	9 cut(s)	145, 241, 353, 414, 646, 767, 872, 1157, 1192
PpuMI	RGGWCCY	1 cut(s)	401
PscI	ACATGT	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	493, 1219
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	2 cut(s)	493, 1219
PspN4I	GGNNCC	4 cut(s)	124, 504, 888, 1345
PspPI	GGNCC	3 cut(s)	401, 719, 886
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	295, 502
RsaI	GTAC	3 cut(s)	78, 665, 1256
RsaNI	GTAC	3 cut(s)	77, 664, 1255
RseI	CAYNNNNRTG	2 cut(s)	389, 596
SacI	GAGCTC	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	438, 668
SatI	GCNGC	9 cut(s)	144, 240, 352, 413, 645, 766, 871, 1156, 1191
Sau3AI	GATC	5 cut(s)	295, 502, 939, 1265, 1291
Sau96I	GGNCC	3 cut(s)	401, 719, 886
ScrFI	CCNGG	3 cut(s)	495, 1221, 1288
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	4 cut(s)	418, 911, 989, 1177
SinI	GGWCC	3 cut(s)	401, 719, 886
SmiMI	CAYNNNNRTG	2 cut(s)	389, 596
SmlI	CTYRAG	2 cut(s)	527, 1016
SmoI	CTYRAG	2 cut(s)	527, 1016
Sse9I	AATT	7 cut(s)	327, 584, 594, 862, 989, 1305, 1323
SsiI	CCGC	3 cut(s)	58, 143, 516
SspMI	CTAG	3 cut(s)	74, 398, 1067
SstI	GAGCTC	1 cut(s)	617
StyD4I	CCNGG	3 cut(s)	493, 1219, 1286
StyI	CCWWGG	2 cut(s)	138, 1066
TaaI	ACNGT	3 cut(s)	812, 1111, 1170
TaiI	ACGT	1 cut(s)	1303
TaqI	TCGA	1 cut(s)	433
TasI	AATT	7 cut(s)	327, 584, 594, 862, 989, 1305, 1323
TatI	WGTACW	3 cut(s)	76, 663, 1254
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	164, 1001
Tru1I	TTAA	2 cut(s)	438, 668
Tru9I	TTAA	2 cut(s)	438, 668
TscAI	CASTG	2 cut(s)	817, 1114
TseFI	GTSAC	2 cut(s)	133, 187
TseI	GCWGC	8 cut(s)	239, 351, 412, 644, 765, 870, 1155, 1190
Tsp45I	GTSAC	2 cut(s)	133, 187
TspDTI	ATGAA	5 cut(s)	759, 1039, 1204, 1298, 1342
TspGWI	ACGGA	1 cut(s)	694
TspRI	CASTG	2 cut(s)	817, 1114
VpaK11BI	GGWCC	3 cut(s)	401, 719, 886
XapI	RAATTY	3 cut(s)	584, 862, 1323
XceI	RCATGY	1 cut(s)	276
XmaJI	CCTAGG	1 cut(s)	1066
XspI	CTAG	3 cut(s)	74, 398, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.