RchiOBHm_Chr4g0437771

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018027
Physical Location & Seq
Forward (+)
60747150 .. 60747614
465 bp
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UTR
Exon/CDS
Intron
PRQ40600

Sequence Viewer

Length: 465 bp
ATGTTTACCATATTCTTGTTCATTTACCATCTAATAGCCTTCGTTTCAGCACACAGATCAGATTATGTGCTAGCAGATGACATGGTAATCGACTGTGGCCCGTTGTCAACATCCAAAGTTGGGTTTCTAGAGCCGGAGTCTCCACTATCCACCATTGATGCTGAGAGGAAGATTGGAGCTTCTAGTCATATACCTGGACCTATTCTGTTTCAAACGAACTACACTTACACCTGTATCGTCCCTCCAGGTCCCAAAATCATTCAATTCCAGTTCTATCCAACCTCACTGGAAAGCATAAACAAATCCGAAGCATTATTTACCATCAGTGCTGGAAAGTACACTTTGTTGAAGACTTCAGCATCCTCCTACTCTATAGGTTCTCAAGGTCAAATCCAGCATGCCATCAGAGAATTCTGCATCAACGTAGATCATGGAAGACTACACGTGACATTCACGCCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.02

Weight (kDa)

6.27

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018027)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29510
rosa_chinensis RchiOBHm_Chr4g0437771 RchiOBHm_Chr4g0437781
rosa_laevigata RLG00000006417
rosa_multiflora Rmu_sc0001538.1_g000005 Rmu_sc0001629.1_g000005
rosa_roxburghii Rroxscaffold_5G00378880
rosa_rugosa Rorug04G0303600
rosa_samantha Rh4BG366400 Rh4CG380500
rosa_wichuraiana Rw4G031390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 339
AcvI CACGTG 1 cut(s) 445
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 3 cut(s) 212, 263, 349
AjnI CCWGG 2 cut(s) 193, 244
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 410
AspS9I GGNCC 3 cut(s) 98, 197, 248
AsuNHI GCTAGC 1 cut(s) 70
AvaII GGWCC 2 cut(s) 197, 248
BaeI ACNNNNGTAYC 2 cut(s) 217, 250
BbrPI CACGTG 1 cut(s) 445
BbsI GAAGAC 2 cut(s) 356, 442
BccI CCATC 3 cut(s) 36, 329, 410
BciT130I CCWGG 2 cut(s) 195, 246
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 3 cut(s) 71, 128, 183
BfmI CTRYAG 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 195, 246
Bme18I GGWCC 2 cut(s) 197, 248
BmgT120I GGNCC 3 cut(s) 98, 197, 248
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 195, 246
BmsI GCATC 3 cut(s) 148, 368, 426
BmtI GCTAGC 1 cut(s) 74
BpiI GAAGAC 2 cut(s) 356, 442
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 268, 291
BseBI CCWGG 2 cut(s) 195, 246
BseGI GGATG 2 cut(s) 110, 359
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 268, 291
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 2 cut(s) 224, 234
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 224, 234
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 56, 427
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 268, 291
BssMI GATC 2 cut(s) 56, 427
Bst2UI CCWGG 2 cut(s) 195, 246
Bst4CI ACNGT 1 cut(s) 95
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 72, 399
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 110, 359
BstKTI GATC 2 cut(s) 59, 430
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 56, 427
BstNI CCWGG 2 cut(s) 195, 246
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 193, 244
BstSFI CTRYAG 1 cut(s) 372
BstV2I GAAGAC 2 cut(s) 356, 442
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 110, 359
BtsIMutI CAGTG 2 cut(s) 284, 331
Cac8I GCNNGC 2 cut(s) 72, 399
CciI TCATGA 1 cut(s) 461
Cfr13I GGNCC 3 cut(s) 98, 197, 248
Csp6I GTAC 1 cut(s) 337
CviAII CATG 4 cut(s) 82, 398, 431, 462
CviJI RGCY 4 cut(s) 38, 99, 133, 179
CviKI_1 RGCY 4 cut(s) 38, 99, 133, 179
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 58, 429
DpnII GATC 2 cut(s) 56, 427
Eco47I GGWCC 2 cut(s) 197, 248
Eco57I CTGAAG 1 cut(s) 339
Eco72I CACGTG 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 193, 244
FaeI CATG 4 cut(s) 85, 401, 434, 465
FaqI GGGAC 2 cut(s) 224, 234
FatI CATG 4 cut(s) 81, 397, 430, 461
FokI GGATG 2 cut(s) 97, 346
FspBI CTAG 3 cut(s) 71, 128, 183
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 134
Hin1II CATG 4 cut(s) 85, 401, 434, 465
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 3 cut(s) 6, 108, 339
Hpy188I TCNGA 3 cut(s) 61, 307, 407
Hpy188III TCNNGA 2 cut(s) 128, 462
Hpy8I GTNNAC 3 cut(s) 6, 108, 339
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 2 cut(s) 423, 444
HpyCH4V TGCA 1 cut(s) 417
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 423, 444
Hsp92II CATG 4 cut(s) 85, 401, 434, 465
Kzo9I GATC 2 cut(s) 56, 427
LmnI GCTCC 1 cut(s) 176
LweI GCATC 3 cut(s) 148, 368, 426
MaeI CTAG 3 cut(s) 71, 128, 183
MaeII ACGT 2 cut(s) 423, 444
MaeIII GTNAC 1 cut(s) 445
MalI GATC 2 cut(s) 58, 429
MboI GATC 2 cut(s) 56, 427
MboII GAAGA 3 cut(s) 181, 361, 447
MluCI AATT 2 cut(s) 263, 410
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 4 cut(s) 159, 252, 292, 373
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 195, 246
MvaI CCWGG 2 cut(s) 195, 246
NdeII GATC 2 cut(s) 56, 427
NheI GCTAGC 1 cut(s) 70
NlaIII CATG 4 cut(s) 85, 401, 434, 465
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 401
PaeI GCATGC 1 cut(s) 401
PagI TCATGA 1 cut(s) 461
PleI GAGTC 1 cut(s) 145
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 193, 244
PspCI CACGTG 1 cut(s) 445
PspGI CCWGG 2 cut(s) 193, 244
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 3 cut(s) 98, 197, 248
PspPPI RGGWCCY 1 cut(s) 248
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
Sau3AI GATC 2 cut(s) 56, 427
Sau96I GGNCC 3 cut(s) 98, 197, 248
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 195, 246
SfaNI GCATC 3 cut(s) 148, 368, 426
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 2 cut(s) 197, 248
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
SphI GCATGC 1 cut(s) 401
Sse9I AATT 2 cut(s) 263, 410
SspMI CTAG 3 cut(s) 71, 128, 183
StyD4I CCNGG 2 cut(s) 193, 244
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 2 cut(s) 426, 447
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 263, 410
TatI WGTACW 1 cut(s) 336
TscAI CASTG 2 cut(s) 291, 331
TseFI GTSAC 1 cut(s) 445
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 2 cut(s) 291, 331
VpaK11BI GGWCC 2 cut(s) 197, 248
XapI RAATTY 1 cut(s) 410
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 401
XspI CTAG 3 cut(s) 71, 128, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.