Rmu_sc0001629.1_g000005

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001629.1
OG0018027
Physical Location & Seq
Reverse (-)
18540 .. 19214
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001629.1_g000005.1.cds

Sequence Viewer

Length: 675 bp
atgctctccaagctacgacaccaccacttggtttctttgattgggtactgcaaagaggacaaggaaatgatacttgtgtacgactatatggcacaaggtacactccgtgatcatctttatggtaagtaccagaaacccccacttccttggaagcagaggatcaagatatgtataggagcagcccgaggcctgcactatctccacacaggggcaaatgaaaaaatcattcaccgggatgtgaaggctagtaacatattgttggacaaaaaattggtggccaaagtttcagattttggattgtcaaaagttggccccgaccagaatatgattagtgccactgcccaatcatcaaatggtgagactcctcatgttagcactgaagtaaagggtagttttggatacctggccccggaatataatcgaagacagaaactgaccgagaaatcaggcatttattcatttggggtagtgttgtttgaagttgtgtgtgctaggccagctgtgataagcgttgtagaaaatggggagccagaacaagtaaacttaagtgaatgggcactagaacattgtaatcctggtcaggaggggaaagcaattgatcagatcctagacccgtctctatggggaaagatcaattccgagtctctgaagacattcacaggcatagcaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

224

Amino Acids

24.95

Weight (kDa)

8.56

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018027)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29510
rosa_chinensis RchiOBHm_Chr4g0437771 RchiOBHm_Chr4g0437781
rosa_laevigata RLG00000006417
rosa_multiflora Rmu_sc0001538.1_g000005 Rmu_sc0001629.1_g000005
rosa_roxburghii Rroxscaffold_5G00378880
rosa_rugosa Rorug04G0303600
rosa_samantha Rh4BG366400 Rh4CG380500
rosa_wichuraiana Rw4G031390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AclWI GGATC 2 cut(s) 167, 598
AcoI YGGCCR 1 cut(s) 276
AcuI CTGAAG 2 cut(s) 399, 668
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 4 cut(s) 47, 80, 100, 128
AfiI CCNNNNNNNGG 3 cut(s) 28, 208, 409
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 1 cut(s) 479
AjnI CCWGG 2 cut(s) 402, 574
AluBI AGCT 2 cut(s) 13, 500
AluI AGCT 2 cut(s) 13, 500
Alw26I GTCTC 3 cut(s) 353, 621, 648
AlwI GGATC 2 cut(s) 167, 598
AlwNI CAGNNNCTG 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 5 cut(s) 187, 276, 310, 405, 494
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 653
AspS9I GGNCC 2 cut(s) 311, 406
AsuC2I CCSGG 2 cut(s) 233, 410
AsuHPI GGTGA 2 cut(s) 221, 368
AvaI CYCGRG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 559
BaeI ACNNNNGTAYC 2 cut(s) 62, 95
BalI TGGCCA 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 430, 656
BbvI GCAGC 1 cut(s) 191
BciT130I CCWGG 2 cut(s) 404, 576
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 2 cut(s) 109, 598
BcnI CCSGG 2 cut(s) 233, 410
BcoDI GTCTC 3 cut(s) 353, 621, 648
BfaI CTAG 4 cut(s) 246, 492, 560, 608
BfrI CTTAAG 1 cut(s) 544
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 4 cut(s) 233, 404, 410, 576
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 311, 406
BmiI GGNNCC 3 cut(s) 313, 408, 528
BmrFI CCNGG 4 cut(s) 233, 404, 410, 576
BpiI GAAGAC 2 cut(s) 430, 656
BpuMI CCSGG 2 cut(s) 233, 410
BsaJI CCNNGG 3 cut(s) 146, 184, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 208, 409
BseBI CCWGG 2 cut(s) 404, 576
BseDI CCNNGG 3 cut(s) 146, 184, 408
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 28, 208, 409
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 5 cut(s) 189, 278, 312, 407, 496
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 232, 410
BslI CCNNNNNNNGG 3 cut(s) 28, 208, 409
BsmAI GTCTC 3 cut(s) 353, 621, 648
BsmBI CGTCTC 1 cut(s) 621
BsnI GGCC 5 cut(s) 189, 278, 312, 407, 496
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 5 cut(s) 109, 159, 598, 603, 630
BspANI GGCC 5 cut(s) 189, 278, 312, 407, 496
BspLI GGNNCC 3 cut(s) 313, 408, 528
BspPI GGATC 2 cut(s) 167, 598
BspTI CTTAAG 1 cut(s) 544
BssECI CCNNGG 3 cut(s) 146, 184, 408
BssMI GATC 5 cut(s) 109, 159, 598, 603, 630
BssT1I CCWWGG 1 cut(s) 146
Bst2UI CCWGG 2 cut(s) 404, 576
BstAFI CTTAAG 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 191, 498
BstDEI CTNAG 1 cut(s) 672
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 5 cut(s) 112, 162, 601, 606, 633
BstMAI GTCTC 3 cut(s) 353, 621, 648
BstMBI GATC 5 cut(s) 109, 159, 598, 603, 630
BstMWI GCNNNNNNNGC 2 cut(s) 10, 497
BstNI CCWGG 2 cut(s) 404, 576
BstSCI CCNGG 4 cut(s) 231, 402, 408, 574
BstSLI GKGCMC 1 cut(s) 559
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 2 cut(s) 430, 656
BstX2I RGATCY 1 cut(s) 603
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 1 cut(s) 603
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 5 cut(s) 189, 278, 312, 407, 496
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 336, 375
Cac8I GCNNGC 2 cut(s) 191, 498
CaiI CAGNNNCTG 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 311, 406
Csp6I GTAC 4 cut(s) 46, 79, 99, 127
CviAII CATG 1 cut(s) 368
CviQI GTAC 4 cut(s) 46, 79, 99, 127
DdeI CTNAG 1 cut(s) 672
DpnI GATC 5 cut(s) 111, 161, 600, 605, 632
DpnII GATC 5 cut(s) 109, 159, 598, 603, 630
DraIII CACNNNGTG 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 146
Eco147I AGGCCT 1 cut(s) 189
Eco57I CTGAAG 2 cut(s) 399, 668
Eco88I CYCGRG 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 402, 574
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 1 cut(s) 371
FatI CATG 1 cut(s) 367
FbaI TGATCA 2 cut(s) 109, 598
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 4 cut(s) 246, 492, 560, 608
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 5 cut(s) 189, 278, 312, 407, 496
HapII CCGG 2 cut(s) 232, 410
Hin1II CATG 1 cut(s) 371
HinfI GANTC 2 cut(s) 361, 641
HpaII CCGG 2 cut(s) 232, 410
HphI GGTGA 2 cut(s) 221, 368
Hpy166II GTNNAC 3 cut(s) 79, 101, 541
Hpy188I TCNGA 4 cut(s) 289, 603, 640, 648
Hpy188III TCNNGA 2 cut(s) 163, 581
Hpy8I GTNNAC 3 cut(s) 79, 101, 541
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 51, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 497
HpyF3I CTNAG 1 cut(s) 672
Hsp92II CATG 1 cut(s) 371
Ksp22I TGATCA 2 cut(s) 109, 598
Kzo9I GATC 5 cut(s) 109, 159, 598, 603, 630
LmnI GCTCC 2 cut(s) 176, 526
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 4 cut(s) 246, 492, 560, 608
MaeIII GTNAC 1 cut(s) 248
MalI GATC 5 cut(s) 111, 161, 600, 605, 632
MboI GATC 5 cut(s) 109, 159, 598, 603, 630
MboII GAAGA 2 cut(s) 435, 661
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 559
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 3 cut(s) 269, 594, 634
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 2 cut(s) 355, 650
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 49, 150, 179, 375, 577
Mox20I TGGCCA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 653
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 2 cut(s) 117, 234
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 2 cut(s) 232, 410
MspR9I CCNGG 4 cut(s) 233, 404, 410, 576
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 2 cut(s) 404, 576
MwoI GCNNNNNNNGC 2 cut(s) 10, 497
NciI CCSGG 2 cut(s) 233, 410
NdeII GATC 5 cut(s) 109, 159, 598, 603, 630
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 3 cut(s) 313, 408, 528
PceI AGGCCT 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 653
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 2 cut(s) 355, 649
PpsI GAGTC 2 cut(s) 355, 649
Psp6I CCWGG 2 cut(s) 402, 574
PspGI CCWGG 2 cut(s) 402, 574
PspN4I GGNNCC 3 cut(s) 313, 408, 528
PspPI GGNCC 2 cut(s) 311, 406
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 603
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 4 cut(s) 47, 80, 100, 128
RsaNI GTAC 4 cut(s) 46, 79, 99, 127
RseI CAYNNNNRTG 2 cut(s) 117, 234
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 5 cut(s) 109, 159, 598, 603, 630
Sau96I GGNCC 2 cut(s) 311, 406
SchI GAGTC 2 cut(s) 355, 650
ScrFI CCNGG 4 cut(s) 233, 404, 410, 576
SduI GDGCHC 1 cut(s) 559
SetI ASST 4 cut(s) 15, 100, 405, 502
SmiMI CAYNNNNRTG 2 cut(s) 117, 234
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 3 cut(s) 269, 594, 634
SseBI AGGCCT 1 cut(s) 189
SspMI CTAG 4 cut(s) 246, 492, 560, 608
StuI AGGCCT 1 cut(s) 189
StyD4I CCNGG 4 cut(s) 231, 402, 408, 574
StyI CCWWGG 1 cut(s) 146
TaqI TCGA 1 cut(s) 421
TaqII GACCGA 1 cut(s) 452
TasI AATT 3 cut(s) 269, 594, 634
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 2 cut(s) 343, 382
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 231, 447
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 343, 382
Van91I CCANNNNNTGG 1 cut(s) 28
Vha464I CTTAAG 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 4 cut(s) 246, 492, 560, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.