Rh4BG366400

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018027
Physical Location & Seq
Forward (+)
52551304 .. 52564196
12893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG366400.1

Sequence Viewer

Length: 864 bp
ATGGCTCTTGAGACCATGTACCGAGTCAACGTAGGCGGGCCTTTCATCTCTCCTGATCTAGATGGTTCTGAGATGCTGCGCACCTGGTCCACAGACGAAACATATCTGAATGCTATTGAGGACGATACACACATTCTTCAATCAAACATAGGAATTAAGTACAGCTCAGAGGTCCCAGCATACACTGCACCAGTAAAAGTATACACCACAACCAGGGCTTTATATGTTGATGGTAATACTAGCTGGTCATTCCCTCTTGATTCTGGATTCTATTACCTCATCAGATTTCATTTCTGCGAGATCAGTAAGAAGATTAAGCTAGGCGAAAGAGTTTTTAAAGTCTACATCAACTATCAAACAGCTGAGAACCATGCAGATGTAATCGAATGGAGCAATGGAGCTGGTCTTCCAGTACGTCGAGATTATGTCGTTGATTATGTTTCCGGGCATAGCAATAGCACGCGGAATCTGGTGGTTGCAATAGAAAACAACAACTCAGAACTTGATGATCATCAGGGAATCTTAAATGGCTTGGAAATCTTCAAAATATCAGACACTAACAACAATCTTGCTGGGGCGCATCCATTTGGTTTTGAAGTTGATCAGTACCAAAACATTCCAACATTTACTGCTGCACGTATCTTTCGCCGAATAGGTACAAAAATGAATCCTGCAGCAGTCGTTGCACTTGCATTTGGCGCCACTGGCGCCGTTGCACTTTGGATGCTGGGTTTCTTCGGAGATTCTGAATCTGGATCTCAACTACTTGTTTCATCGGGTTCGTCTCCGGAGCAAAGGAGGACAAAGAAGCCACCGAGGAAGAGACTAGATGATATTCATGGAATCTCAAGCGTTTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

287

Amino Acids

31.95

Weight (kDa)

5.54

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 3 - 183 6.7e-13 Malectin-like domain
Malectin PF11721 8 - 149 2.7e-07 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018027)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29510
rosa_chinensis RchiOBHm_Chr4g0437771 RchiOBHm_Chr4g0437781
rosa_laevigata RLG00000006417
rosa_multiflora Rmu_sc0001538.1_g000005 Rmu_sc0001629.1_g000005
rosa_roxburghii Rroxscaffold_5G00378880
rosa_rugosa Rorug04G0303600
rosa_samantha Rh4BG366400 Rh4CG380500
rosa_wichuraiana Rw4G031390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 80
AccB1I GGYRCC 2 cut(s) 698, 707
AccI GTMKAC 2 cut(s) 201, 342
AccII CGCG 1 cut(s) 463
AccIII TCCGGA 1 cut(s) 787
AciI CCGC 2 cut(s) 36, 463
AclWI GGATC 1 cut(s) 763
AcyI GRCGYC 2 cut(s) 699, 708
AfaI GTAC 5 cut(s) 20, 161, 414, 608, 658
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 3 cut(s) 140, 544, 596
AjnI CCWGG 2 cut(s) 83, 212
AluBI AGCT 5 cut(s) 165, 243, 319, 362, 401
AluI AGCT 5 cut(s) 165, 243, 319, 362, 401
Alw26I GTCTC 3 cut(s) 5, 789, 817
AlwI GGATC 1 cut(s) 763
Aor13HI TCCGGA 1 cut(s) 787
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 3 cut(s) 76, 632, 674
AspLEI GCGC 4 cut(s) 81, 580, 701, 710
AspS9I GGNCC 3 cut(s) 38, 87, 172
AsuC2I CCSGG 1 cut(s) 445
AvaII GGWCC 2 cut(s) 87, 172
BanI GGYRCC 2 cut(s) 698, 707
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 3 cut(s) 63, 619, 686
BccI CCATC 2 cut(s) 56, 224
BceAI ACGGC 1 cut(s) 695
BciT130I CCWGG 2 cut(s) 85, 214
BclI TGATCA 2 cut(s) 508, 601
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 3 cut(s) 5, 789, 817
BfaI CTAG 4 cut(s) 59, 240, 320, 827
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 2 cut(s) 702, 711
BisI GCNGC 3 cut(s) 77, 633, 675
BlsI GCNGC 3 cut(s) 78, 634, 676
Bme1390I CCNGG 3 cut(s) 85, 214, 445
Bme18I GGWCC 2 cut(s) 87, 172
BmgT120I GGNCC 3 cut(s) 38, 87, 172
BmiI GGNNCC 3 cut(s) 174, 700, 709
BmrFI CCNGG 3 cut(s) 85, 214, 445
BmsI GCATC 3 cut(s) 63, 589, 714
BpiI GAAGAC 1 cut(s) 398
BpuEI CTTGAG 2 cut(s) 29, 832
BpuMI CCSGG 1 cut(s) 445
BsaAI YACGTR 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 510
BsaHI GRCGYC 2 cut(s) 699, 708
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 213, 815
BsaWI WCCGGW 1 cut(s) 787
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 3 cut(s) 191, 410, 709
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 787
BseBI CCWGG 2 cut(s) 85, 214
BseDI CCNNGG 2 cut(s) 213, 815
BseGI GGATG 2 cut(s) 580, 729
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 4 cut(s) 60, 180, 354, 510
BseNI ACTGG 3 cut(s) 191, 410, 709
BseXI GCAGC 3 cut(s) 63, 619, 686
BseYI CCCAGC 3 cut(s) 175, 572, 727
BsgI GTGCAG 2 cut(s) 171, 618
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 2 cut(s) 698, 707
BsiSI CCGG 2 cut(s) 444, 788
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 3 cut(s) 5, 789, 817
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 787
Bsp143I GATC 5 cut(s) 55, 300, 508, 601, 755
BspACI CCGC 2 cut(s) 36, 463
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 4 cut(s) 61, 179, 355, 509
BspEI TCCGGA 1 cut(s) 787
BspFNI CGCG 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 174, 700, 709
BspMAI CTGCAG 1 cut(s) 676
BspPI GGATC 1 cut(s) 763
BspT107I GGYRCC 2 cut(s) 698, 707
BspTNI GGTCTC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 3 cut(s) 191, 410, 709
BssECI CCNNGG 2 cut(s) 213, 815
BssMI GATC 5 cut(s) 55, 300, 508, 601, 755
BssNAI GTATAC 1 cut(s) 202
BssNI GRCGYC 2 cut(s) 699, 708
Bst1107I GTATAC 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 85, 214
Bst6I CTCTTC 1 cut(s) 815
BstACI GRCGYC 2 cut(s) 699, 708
BstAPI GCANNNNNTGC 2 cut(s) 185, 683
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 38, 461
BstDEI CTNAG 4 cut(s) 69, 166, 363, 496
BstF5I GGATG 2 cut(s) 580, 729
BstFNI CGCG 1 cut(s) 463
BstH2I RGCGCY 2 cut(s) 702, 711
BstHHI GCGC 4 cut(s) 81, 580, 701, 710
BstKTI GATC 5 cut(s) 58, 303, 511, 604, 758
BstMAI GTCTC 3 cut(s) 5, 789, 817
BstMBI GATC 5 cut(s) 55, 300, 508, 601, 755
BstMWI GCNNNNNNNGC 5 cut(s) 185, 683, 698, 705, 707
BstNI CCWGG 2 cut(s) 85, 214
BstSCI CCNGG 3 cut(s) 83, 212, 443
BstSFI CTRYAG 1 cut(s) 672
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 3 cut(s) 63, 619, 686
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 755
BstYI RGATCY 1 cut(s) 755
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 580, 729
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 702
Cac8I GCNNGC 2 cut(s) 38, 461
CfoI GCGC 4 cut(s) 81, 580, 701, 710
Cfr13I GGNCC 3 cut(s) 38, 87, 172
CsiI ACCWGGT 1 cut(s) 83
Csp6I GTAC 5 cut(s) 19, 160, 413, 607, 657
CviAII CATG 3 cut(s) 16, 371, 839
CviQI GTAC 5 cut(s) 19, 160, 413, 607, 657
DdeI CTNAG 4 cut(s) 69, 166, 363, 496
DinI GGCGCC 2 cut(s) 700, 709
DpnI GATC 5 cut(s) 57, 302, 510, 603, 757
DpnII GATC 5 cut(s) 55, 300, 508, 601, 755
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 815
EarI CTCTTC 1 cut(s) 815
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 2 cut(s) 87, 172
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 83, 212
EgeI GGCGCC 2 cut(s) 700, 709
EheI GGCGCC 2 cut(s) 700, 709
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 3 cut(s) 19, 374, 842
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 15, 370, 838
FauI CCCGC 1 cut(s) 29
FbaI TGATCA 2 cut(s) 508, 601
FblI GTMKAC 2 cut(s) 201, 342
Fnu4HI GCNGC 3 cut(s) 77, 633, 675
FokI GGATG 2 cut(s) 567, 736
Fsp4HI GCNGC 3 cut(s) 77, 633, 675
FspBI CTAG 4 cut(s) 59, 240, 320, 827
FspI TGCGCA 1 cut(s) 80
GlaI GCGC 4 cut(s) 80, 579, 700, 709
GluI GCNGC 3 cut(s) 77, 633, 675
GsaI CCCAGC 3 cut(s) 179, 576, 731
HaeII RGCGCY 2 cut(s) 702, 711
HaeIII GGCC 1 cut(s) 40
HapII CCGG 2 cut(s) 444, 788
HhaI GCGC 4 cut(s) 81, 580, 701, 710
Hin1I GRCGYC 2 cut(s) 699, 708
Hin1II CATG 3 cut(s) 19, 374, 842
Hin6I GCGC 4 cut(s) 79, 578, 699, 708
HinP1I GCGC 4 cut(s) 79, 578, 699, 708
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 9 cut(s) 24, 260, 267, 466, 519, 667, 743, 749, 843
HpaII CCGG 2 cut(s) 444, 788
Hpy166II GTNNAC 4 cut(s) 28, 90, 202, 343
Hpy188I TCNGA 8 cut(s) 70, 108, 169, 284, 499, 553, 740, 748
Hpy188III TCNNGA 8 cut(s) 8, 53, 59, 257, 264, 419, 753, 788
Hpy8I GTNNAC 4 cut(s) 28, 90, 202, 343
Hpy99I CGWCG 1 cut(s) 420
HpyCH4IV ACGT 3 cut(s) 30, 415, 637
HpyCH4V TGCA 8 cut(s) 188, 374, 479, 635, 674, 686, 692, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 683, 698, 705, 707
HpyF3I CTNAG 4 cut(s) 69, 166, 363, 496
HpySE526I ACGT 3 cut(s) 30, 415, 637
Hsp92I GRCGYC 2 cut(s) 699, 708
Hsp92II CATG 3 cut(s) 19, 374, 842
HspAI GCGC 4 cut(s) 79, 578, 699, 708
KasI GGCGCC 2 cut(s) 698, 707
Kpn2I TCCGGA 1 cut(s) 787
Ksp22I TGATCA 2 cut(s) 508, 601
Kzo9I GATC 5 cut(s) 55, 300, 508, 601, 755
LmnI GCTCC 3 cut(s) 390, 398, 790
Lsp1109I GCAGC 3 cut(s) 63, 619, 686
LweI GCATC 3 cut(s) 63, 589, 714
MabI ACCWGGT 1 cut(s) 83
MaeI CTAG 4 cut(s) 59, 240, 320, 827
MaeII ACGT 3 cut(s) 30, 415, 637
MalI GATC 5 cut(s) 57, 302, 510, 603, 757
MboI GATC 5 cut(s) 55, 300, 508, 601, 755
MboII GAAGA 6 cut(s) 128, 322, 398, 532, 727, 832
MflI RGATCY 1 cut(s) 755
MluCI AATT 1 cut(s) 153
Mly113I GGCGCC 2 cut(s) 699, 708
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 6 cut(s) 112, 163, 264, 287, 792, 810
MroI TCCGGA 1 cut(s) 787
MseI TTAA 4 cut(s) 156, 315, 336, 524
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 444, 788
MspR9I CCNGG 3 cut(s) 85, 214, 445
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 2 cut(s) 85, 214
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 5 cut(s) 185, 683, 698, 705, 707
NarI GGCGCC 2 cut(s) 699, 708
NciI CCSGG 1 cut(s) 445
NdeII GATC 5 cut(s) 55, 300, 508, 601, 755
NlaIII CATG 3 cut(s) 19, 374, 842
NlaIV GGNNCC 3 cut(s) 174, 700, 709
NsbI TGCGCA 1 cut(s) 80
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 8 cut(s) 260, 267, 466, 519, 667, 743, 749, 843
PkrI GCNGC 3 cut(s) 78, 634, 676
PleI GAGTC 1 cut(s) 32
PluTI GGCGCC 2 cut(s) 702, 711
PpsI GAGTC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 83, 212
PspFI CCCAGC 3 cut(s) 175, 572, 727
PspGI CCWGG 2 cut(s) 83, 212
PspN4I GGNNCC 3 cut(s) 174, 700, 709
PspPI GGNCC 3 cut(s) 38, 87, 172
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 755
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 5 cut(s) 20, 161, 414, 608, 658
RsaNI GTAC 5 cut(s) 19, 160, 413, 607, 657
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 4 cut(s) 156, 315, 336, 524
SatI GCNGC 3 cut(s) 77, 633, 675
Sau3AI GATC 5 cut(s) 55, 300, 508, 601, 755
Sau96I GGNCC 3 cut(s) 38, 87, 172
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 3 cut(s) 85, 214, 445
SexAI ACCWGGT 1 cut(s) 83
SfaNI GCATC 3 cut(s) 63, 589, 714
SfcI CTRYAG 1 cut(s) 672
SfoI GGCGCC 2 cut(s) 700, 709
SinI GGWCC 2 cut(s) 87, 172
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 8, 847
SmoI CTYRAG 2 cut(s) 8, 847
Sse9I AATT 1 cut(s) 153
SsiI CCGC 2 cut(s) 36, 463
SspDI GGCGCC 2 cut(s) 698, 707
SspMI CTAG 4 cut(s) 59, 240, 320, 827
StyD4I CCNGG 3 cut(s) 83, 212, 443
TaiI ACGT 3 cut(s) 33, 418, 640
TaqI TCGA 2 cut(s) 384, 418
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 8 cut(s) 260, 267, 466, 519, 667, 743, 749, 843
Tru1I TTAA 4 cut(s) 156, 315, 336, 524
Tru9I TTAA 4 cut(s) 156, 315, 336, 524
TscAI CASTG 2 cut(s) 190, 709
TseI GCWGC 3 cut(s) 76, 632, 674
TspDTI ATGAA 5 cut(s) 34, 278, 680, 762, 827
TspRI CASTG 2 cut(s) 190, 709
VpaK11BI GGWCC 2 cut(s) 87, 172
XbaI TCTAGA 1 cut(s) 58
XmiI GTMKAC 2 cut(s) 201, 342
XspI CTAG 4 cut(s) 59, 240, 320, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.