Rroxscaffold_5G00378880

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018027
Physical Location & Seq
Forward (+)
59418756 .. 59421102
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378880.1

Sequence Viewer

Length: 2157 bp
ATGTTTACTATATTCTTGTTCATTTACCATCTAATAGCCTTCGTTTCAGCACACAGATCAGATTATGTGCTAGCAGATGACATGGTAATCGACTGTGGCCCGTTGTCAACATCCAAAGTTGGGTTTCTAGAGCCCGTGTCTCCACTATCCACCATTGATGCTGAGAGTAAGATTGGAGCTTCTAGTCGTATACCTGGACCTATTCTCTTTCAAATGAACTACACTTACACCTGTATCGTCCCTCCAGGTCCCAAAATCATTCAATTCCAGTTCTATCCAACCTCACTGGAAAGCATAAACAAATCCGAAGCATTATTTACCATCAGTGCTGGAAAGTACACTTTGTTGACGACTTCAGCATCCTCCTACTCTATAGGTTCTCAAGGTCAAATCCAGCATGCCATCAGAGAATTCTGCATCAACGTAGATCATGGAAGACTACACGTGATATTCACGCCATCATCAACTCCTGGTGCCTGTGCACTTGTAAACAAGATCAAAGTTGTTTCGGTGCCGACAAGTCTTTATGTGAGAGGAAATGAGGAAGTTCCCCTTCCAATTCGTCTCATCGGACACAATCCTAAAGACCATCAAGTTTACATCCTCAACAACTCAATGGCTCTTGAGACCATGTACCGAGTCAACGTAGGCGGGCCTTTCATCTCTCCTGATCTAGATGGTTCTGAGATGCTGCGCACCTGGTCCACAGACGAAACATATCTGAGTGCTTATGAGGACGATATACACATTCTTCAATCAAACATAGGAATTAAGTACAGCTCAGAGGTCCCAGCATACACTGCACCAGTAAAAGTATACACCACAACCAGGGCTTTATATGTTGATGGTAATACTAGCTGGTCATTCCCTCTTGATTCTGGATTCTATTACCTCATCAGATTTCATTTCTGCGAGATCAGTAAGAAGATTAAGCTAGGCGAAAGAGTTTTTAAAGTCTACATCAACTATCAAACAGCTGAGGACCATGCAGATGTAATCGAATGGAGCAATGGAGCTGGTCTTCCAGTACGTCGAGATTATGTCATTGATTATGTTTCCGGGCATAACAATAGCATGCGGAATCTGGTTGTTGCAATAGAAAACACCAACTCAGAACTTGATGATCATCAGGGAATCTTAAATGGCTTGGAAATCTTCAAAATATCAGACACTAACAACAATCTTGCTGGGGCACATCCATTCGGTTTTGAAGTTGATCAGTACCAAAACGTTCCAACATTTACTGCTGCACGTATCTTTCGCCGAATAGGTTTTCTGATTGGCAGTGGTGGATTTGGGAAGGTCTACAAGGGTTATATAGGAGGCGCTGGCTACGCTGCAACTACTATTGCTATAAAGCGTGCAGATCCCACTTCGAAGCAAGGCTTACATGAATTCCAAACAGAAATCACCATGCTCTCCAAGCTACGACACCACCACTTGGTTTCTTTGATTGGGTACTGCAAAGAGGACAAGGAAATGATACTTGTGTACGACTATATGGCACAAGGTACACTCCGTGATCATCTTTATGGTGAGTACCAGAAACCCCCACTTCCTTGGAAGCAGAGGATCAAGATATGTATAGGAGCAGCCCGAGGCCTGCACTATCTCCACACAGAGGCAAATGAAAAAATCATTCACCGGGATGTGAAGTCTAGTAACATATTGTTGGACAAAAATTTGGTGGCCGAAGTTTCAGATTTTGGATTGTCAAAAGCTGGCCCCGACCTGAATGTGATTAGTGCCACTGCCCAATCATCAAATGGTGAGACTCCTCATGTTAGCACTGAAGTAAAGTGTAGTTTTGCATACCTGGACCCGGAATATTATCGAAGACAGAAACTGACCGAGAAATCAGACGTTTATTCGTTTGGGGTAGTGTTGTTTGAAGTTGTGTGTGCTAGGCCAGCTGTGATAAGCGTTGTAGAAAATGGGGAGCCAGAACAAGTAAACTTAAGTGAATGGGCACTAGAACATTGTAATCCAGGTCAGGAGGGGAAAGCAATTGATCACACCCTAGACCCGTCTCTATGGGGAAAGATCAATTCCGAGTCTCTGAAGACATTCACAGACATAGCAAGGCAATGTTTGACAGATAGGGGAAGTGAGCGGCCGTCGATGGGGGATGTGTCGTGGAAGTTGGAGCTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

718

Amino Acids

80.05

Weight (kDa)

5.95

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 74 - 388 1e-16 Malectin-like domain
Malectin PF11721 212 - 350 2.8e-07 Malectin domain
Pkinase PF00069 426 - 710 1.4e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 427 - 662 2.3e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018027)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29510
rosa_chinensis RchiOBHm_Chr4g0437771 RchiOBHm_Chr4g0437781
rosa_laevigata RLG00000006417
rosa_multiflora Rmu_sc0001538.1_g000005 Rmu_sc0001629.1_g000005
rosa_roxburghii Rroxscaffold_5G00378880
rosa_rugosa Rorug04G0303600
rosa_samantha Rh4BG366400 Rh4CG380500
rosa_wichuraiana Rw4G031390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 695
AccB1I GGYRCC 2 cut(s) 473, 511
AccB7I CCANNNNNTGG 1 cut(s) 1441
AccBSI CCGCTC 1 cut(s) 2113
AccI GTMKAC 4 cut(s) 190, 816, 957, 1305
AciI CCGC 3 cut(s) 651, 1078, 2113
AclI AACGTT 1 cut(s) 1230
AclWI GGATC 2 cut(s) 1361, 1580
AcoI YGGCCR 2 cut(s) 1689, 2114
AcsI RAATTY 3 cut(s) 410, 1394, 1681
AcuI CTGAAG 3 cut(s) 339, 1812, 2081
AcvI CACGTG 1 cut(s) 445
AdeI CACNNNGTG 1 cut(s) 1520
AfaI GTAC 9 cut(s) 338, 635, 776, 1029, 1223, 1460, 1493, 1513, 1541
AfiI CCNNNNNNNGG 6 cut(s) 120, 828, 1441, 1621, 1822, 2123
AflII CTTAAG 1 cut(s) 1957
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 6 cut(s) 212, 263, 755, 1159, 1211, 1892
AjnI CCWGG 7 cut(s) 193, 244, 469, 698, 827, 1815, 1987
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 6 cut(s) 144, 569, 620, 1766, 2034, 2061
Alw44I GTGCAC 1 cut(s) 480
AlwI GGATC 2 cut(s) 1361, 1580
AlwNI CAGNNNCTG 1 cut(s) 1846
Ama87I CYCGRG 1 cut(s) 1596
AoxI GGCC 7 cut(s) 97, 653, 1600, 1689, 1723, 1907, 2114
ApaLI GTGCAC 1 cut(s) 480
ApeKI GCWGC 4 cut(s) 691, 1247, 1337, 1592
ApoI RAATTY 3 cut(s) 410, 1394, 1681
Asp700I GAANNNNTTC 1 cut(s) 2066
AspLEI GCGC 2 cut(s) 696, 1328
AspS9I GGNCC 9 cut(s) 98, 197, 248, 653, 702, 787, 982, 1724, 1819
AsuC2I CCSGG 3 cut(s) 1060, 1646, 1823
AsuHPI GGTGA 4 cut(s) 1402, 1547, 1634, 1781
AsuII TTCGAA 1 cut(s) 1376
AsuNHI GCTAGC 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 1596
AvaII GGWCC 6 cut(s) 197, 248, 702, 787, 982, 1819
BaeGI GKGCMC 3 cut(s) 484, 1195, 1972
BaeI ACNNNNGTAYC 4 cut(s) 217, 250, 1475, 1508
BanI GGYRCC 2 cut(s) 473, 511
BanII GRGCYC 1 cut(s) 135
BbrPI CACGTG 1 cut(s) 445
BbsI GAAGAC 4 cut(s) 442, 1013, 1843, 2069
Bbv12I GWGCWC 1 cut(s) 484
BbvCI CCTCAGC 1 cut(s) 978
BbvI GCAGC 4 cut(s) 678, 1234, 1324, 1604
BccI CCATC 8 cut(s) 36, 329, 410, 466, 597, 671, 839, 2116
BceAI ACGGC 1 cut(s) 2101
BciT130I CCWGG 7 cut(s) 195, 246, 471, 700, 829, 1817, 1989
BclI TGATCA 4 cut(s) 1123, 1216, 1522, 2011
BcnI CCSGG 3 cut(s) 1060, 1646, 1823
BcoDI GTCTC 6 cut(s) 144, 569, 620, 1766, 2034, 2061
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 1329
BfrI CTTAAG 1 cut(s) 1957
BisI GCNGC 5 cut(s) 692, 1248, 1338, 1593, 2114
BlsI GCNGC 5 cut(s) 693, 1249, 1339, 1594, 2115
Bme18I GGWCC 6 cut(s) 197, 248, 702, 787, 982, 1819
BmeT110I CYCGRG 1 cut(s) 1596
BmgT120I GGNCC 9 cut(s) 98, 197, 248, 653, 702, 787, 982, 1724, 1819
BmiI GGNNCC 7 cut(s) 250, 475, 513, 789, 1726, 1821, 1941
BmsI GCATC 4 cut(s) 148, 368, 426, 678
BmtI GCTAGC 1 cut(s) 74
BpiI GAAGAC 4 cut(s) 442, 1013, 1843, 2069
BpmI CTGGAG 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 1376
BpuEI CTTGAG 2 cut(s) 366, 644
BpuMI CCSGG 3 cut(s) 1060, 1646, 1823
BsaAI YACGTR 2 cut(s) 445, 1253
BsaBI GATNNNNATC 1 cut(s) 1125
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 828, 1559, 1597
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 828, 1441, 1621, 1822, 2123
Bse1I ACTGG 4 cut(s) 268, 291, 806, 1025
Bse3DI GCAATG 2 cut(s) 1015, 2093
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 7 cut(s) 195, 246, 471, 700, 829, 1817, 1989
BseDI CCNNGG 3 cut(s) 828, 1559, 1597
BseGI GGATG 6 cut(s) 110, 359, 600, 1195, 1654, 2134
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 6 cut(s) 120, 828, 1441, 1621, 1822, 2123
BseMI GCAATG 2 cut(s) 1015, 2093
BseMII CTCAG 6 cut(s) 153, 675, 713, 795, 969, 1125
BseNI ACTGG 4 cut(s) 268, 291, 806, 1025
BseRI GAGGAG 1 cut(s) 1767
BseSI GKGCMC 3 cut(s) 484, 1195, 1972
BseX3I CGGCCG 1 cut(s) 2114
BseXI GCAGC 4 cut(s) 678, 1234, 1324, 1604
BseYI CCCAGC 2 cut(s) 790, 1187
BsgI GTGCAG 4 cut(s) 786, 1233, 1383, 1589
Bsh1285I CGRYCG 1 cut(s) 2117
BshFI GGCC 7 cut(s) 99, 655, 1602, 1691, 1725, 1909, 2116
BshNI GGYRCC 2 cut(s) 473, 511
BsiEI CGRYCG 1 cut(s) 2117
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 1596
BsiSI CCGG 3 cut(s) 1059, 1645, 1823
BslFI GGGAC 3 cut(s) 224, 234, 773
BslI CCNNNNNNNGG 6 cut(s) 120, 828, 1441, 1621, 1822, 2123
BsmAI GTCTC 6 cut(s) 144, 569, 620, 1766, 2034, 2061
BsmBI CGTCTC 2 cut(s) 569, 2034
BsmFI GGGAC 3 cut(s) 224, 234, 773
BsnI GGCC 7 cut(s) 99, 655, 1602, 1691, 1725, 1909, 2116
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 1596
Bsp119I TTCGAA 1 cut(s) 1376
Bsp1286I GDGCHC 4 cut(s) 135, 484, 1195, 1972
BspACI CCGC 3 cut(s) 651, 1078, 2113
BspANI GGCC 7 cut(s) 99, 655, 1602, 1691, 1725, 1909, 2116
BspCNI CTCAG 6 cut(s) 154, 676, 714, 794, 970, 1124
BspLI GGNNCC 7 cut(s) 250, 475, 513, 789, 1726, 1821, 1941
BspOI GCTAGC 1 cut(s) 74
BspPI GGATC 2 cut(s) 1361, 1580
BspT104I TTCGAA 1 cut(s) 1376
BspT107I GGYRCC 2 cut(s) 473, 511
BspTI CTTAAG 1 cut(s) 1957
BspTNI GGTCTC 1 cut(s) 620
BsrBI CCGCTC 1 cut(s) 2113
BsrDI GCAATG 2 cut(s) 1015, 2093
BsrI ACTGG 4 cut(s) 268, 291, 806, 1025
BssECI CCNNGG 3 cut(s) 828, 1559, 1597
BssNAI GTATAC 2 cut(s) 191, 817
BssT1I CCWWGG 1 cut(s) 1559
Bst1107I GTATAC 2 cut(s) 191, 817
Bst2UI CCWGG 7 cut(s) 195, 246, 471, 700, 829, 1817, 1989
Bst4CI ACNGT 1 cut(s) 95
BstAFI CTTAAG 1 cut(s) 1957
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBAI YACGTR 2 cut(s) 445, 1253
BstBI TTCGAA 1 cut(s) 1376
BstDEI CTNAG 6 cut(s) 162, 684, 722, 781, 978, 1111
BstF5I GGATG 6 cut(s) 110, 359, 600, 1195, 1654, 2134
BstH2I RGCGCY 1 cut(s) 1329
BstHHI GCGC 2 cut(s) 696, 1328
BstMAI GTCTC 6 cut(s) 144, 569, 620, 1766, 2034, 2061
BstMCI CGRYCG 1 cut(s) 2117
BstMWI GCNNNNNNNGC 4 cut(s) 800, 1334, 1423, 1910
BstNI CCWGG 7 cut(s) 195, 246, 471, 700, 829, 1817, 1989
BstNSI RCATGY 2 cut(s) 401, 1078
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 3 cut(s) 484, 1195, 1972
BstV1I GCAGC 4 cut(s) 678, 1234, 1324, 1604
BstV2I GAAGAC 4 cut(s) 442, 1013, 1843, 2069
BstX2I RGATCY 1 cut(s) 1366
BstXI CCANNNNNNTGG 1 cut(s) 1560
BstYI RGATCY 1 cut(s) 1366
BstZ17I GTATAC 2 cut(s) 191, 817
BstZI CGGCCG 1 cut(s) 2114
BsuRI GGCC 7 cut(s) 99, 655, 1602, 1691, 1725, 1909, 2116
BtsCI GGATG 6 cut(s) 110, 359, 600, 1195, 1654, 2134
BtsI GCAGTG 3 cut(s) 798, 1291, 1749
BtsIMutI CAGTG 6 cut(s) 284, 331, 798, 1291, 1749, 1788
CaiI CAGNNNCTG 1 cut(s) 1846
CfoI GCGC 2 cut(s) 696, 1328
Cfr13I GGNCC 9 cut(s) 98, 197, 248, 653, 702, 787, 982, 1724, 1819
CsiI ACCWGGT 1 cut(s) 698
Csp6I GTAC 9 cut(s) 337, 634, 775, 1028, 1222, 1459, 1492, 1512, 1540
CviAII CATG 9 cut(s) 82, 398, 431, 631, 986, 1075, 1391, 1414, 1781
CviQI GTAC 9 cut(s) 337, 634, 775, 1028, 1222, 1459, 1492, 1512, 1540
DdeI CTNAG 6 cut(s) 162, 684, 722, 781, 978, 1111
DraI TTTAAA 1 cut(s) 952
DraIII CACNNNGTG 1 cut(s) 1520
EaeI YGGCCR 2 cut(s) 1689, 2114
EagI CGGCCG 1 cut(s) 2114
EclXI CGGCCG 1 cut(s) 2114
Eco130I CCWWGG 1 cut(s) 1559
Eco147I AGGCCT 1 cut(s) 1602
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 6 cut(s) 197, 248, 702, 787, 982, 1819
Eco52I CGGCCG 1 cut(s) 2114
Eco57I CTGAAG 3 cut(s) 339, 1812, 2081
Eco72I CACGTG 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 1596
EcoO109I RGGNCCY 2 cut(s) 248, 787
EcoRI GAATTC 2 cut(s) 410, 1394
EcoRII CCWGG 7 cut(s) 193, 244, 469, 698, 827, 1815, 1987
EcoT14I CCWWGG 1 cut(s) 1559
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 1559
Esp3I CGTCTC 2 cut(s) 569, 2034
FaeI CATG 9 cut(s) 85, 401, 434, 634, 989, 1078, 1394, 1417, 1784
FalI AAGNNNNNCTT 4 cut(s) 537, 569, 1370, 1402
FaqI GGGAC 3 cut(s) 224, 234, 773
FatI CATG 9 cut(s) 81, 397, 430, 630, 985, 1074, 1390, 1413, 1780
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 4 cut(s) 1123, 1216, 1522, 2011
FblI GTMKAC 4 cut(s) 190, 816, 957, 1305
Fnu4HI GCNGC 5 cut(s) 692, 1248, 1338, 1593, 2114
FokI GGATG 6 cut(s) 97, 346, 587, 1182, 1661, 2141
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 5 cut(s) 692, 1248, 1338, 1593, 2114
FspI TGCGCA 1 cut(s) 695
GlaI GCGC 2 cut(s) 695, 1327
GluI GCNGC 5 cut(s) 692, 1248, 1338, 1593, 2114
GsaI CCCAGC 2 cut(s) 794, 1191
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 1329
HaeIII GGCC 7 cut(s) 99, 655, 1602, 1691, 1725, 1909, 2116
HapII CCGG 3 cut(s) 1059, 1645, 1823
HhaI GCGC 2 cut(s) 696, 1328
Hin1II CATG 9 cut(s) 85, 401, 434, 634, 989, 1078, 1394, 1417, 1784
Hin6I GCGC 2 cut(s) 694, 1326
HinP1I GCGC 2 cut(s) 694, 1326
HincII GTYRAC 3 cut(s) 108, 348, 643
HindII GTYRAC 3 cut(s) 108, 348, 643
HinfI GANTC 7 cut(s) 639, 875, 882, 1081, 1134, 1774, 2054
HpaII CCGG 3 cut(s) 1059, 1645, 1823
HphI GGTGA 4 cut(s) 1402, 1547, 1634, 1781
Hpy188III TCNNGA 9 cut(s) 128, 623, 668, 674, 872, 879, 1034, 1576, 1994
Hpy99I CGWCG 2 cut(s) 1035, 2122
HpyAV CCTTC 3 cut(s) 49, 563, 1294
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 7 cut(s) 423, 444, 645, 1030, 1230, 1252, 1863
HpyF10VI GCNNNNNNNGC 4 cut(s) 800, 1334, 1423, 1910
HpyF3I CTNAG 6 cut(s) 162, 684, 722, 781, 978, 1111
HpySE526I ACGT 7 cut(s) 423, 444, 645, 1030, 1230, 1252, 1863
Hsp92II CATG 9 cut(s) 85, 401, 434, 634, 989, 1078, 1394, 1417, 1784
HspAI GCGC 2 cut(s) 694, 1326
Ksp22I TGATCA 4 cut(s) 1123, 1216, 1522, 2011
LmnI GCTCC 6 cut(s) 176, 1005, 1013, 1589, 1939, 2146
Lsp1109I GCAGC 4 cut(s) 678, 1234, 1324, 1604
LweI GCATC 4 cut(s) 148, 368, 426, 678
MabI ACCWGGT 1 cut(s) 698
MaeII ACGT 7 cut(s) 423, 444, 645, 1030, 1230, 1252, 1863
MaeIII GTNAC 1 cut(s) 1661
MbiI CCGCTC 1 cut(s) 2113
MboII GAAGA 7 cut(s) 447, 743, 937, 1013, 1147, 1848, 2074
MfeI CAATTG 1 cut(s) 2007
MflI RGATCY 1 cut(s) 1366
MhlI GDGCHC 4 cut(s) 135, 484, 1195, 1972
MluCI AATT 8 cut(s) 263, 410, 558, 768, 1394, 1681, 2007, 2047
MlyI GAGTC 3 cut(s) 648, 1768, 2063
MmeI TCCRAC 4 cut(s) 302, 1259, 1653, 2124
MroXI GAANNNNTTC 1 cut(s) 2066
MseI TTAA 5 cut(s) 771, 930, 951, 1139, 1958
MslI CAYNNNNRTG 3 cut(s) 990, 1530, 1647
MspA1I CMGCKG 2 cut(s) 977, 1913
MspCI CTTAAG 1 cut(s) 1957
MspI CCGG 3 cut(s) 1059, 1645, 1823
MunI CAATTG 1 cut(s) 2007
MvaI CCWGG 7 cut(s) 195, 246, 471, 700, 829, 1817, 1989
MwoI GCNNNNNNNGC 4 cut(s) 800, 1334, 1423, 1910
NciI CCSGG 3 cut(s) 1060, 1646, 1823
NheI GCTAGC 1 cut(s) 70
NlaIII CATG 9 cut(s) 85, 401, 434, 634, 989, 1078, 1394, 1417, 1784
NlaIV GGNNCC 7 cut(s) 250, 475, 513, 789, 1726, 1821, 1941
NsbI TGCGCA 1 cut(s) 695
NspI RCATGY 2 cut(s) 401, 1078
NspV TTCGAA 1 cut(s) 1376
PaeI GCATGC 2 cut(s) 401, 1078
PceI AGGCCT 1 cut(s) 1602
PdmI GAANNNNTTC 1 cut(s) 2066
PfeI GAWTC 4 cut(s) 875, 882, 1081, 1134
PflMI CCANNNNNTGG 1 cut(s) 1441
PkrI GCNGC 5 cut(s) 693, 1249, 1339, 1594, 2115
PleI GAGTC 3 cut(s) 647, 1768, 2062
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 3 cut(s) 647, 1768, 2062
Ppu21I YACGTR 2 cut(s) 445, 1253
PpuMI RGGWCCY 2 cut(s) 248, 787
Psp1406I AACGTT 1 cut(s) 1230
Psp5II RGGWCCY 2 cut(s) 248, 787
Psp6I CCWGG 7 cut(s) 193, 244, 469, 698, 827, 1815, 1987
PspCI CACGTG 1 cut(s) 445
PspFI CCCAGC 2 cut(s) 790, 1187
PspGI CCWGG 7 cut(s) 193, 244, 469, 698, 827, 1815, 1987
PspN4I GGNNCC 7 cut(s) 250, 475, 513, 789, 1726, 1821, 1941
PspPI GGNCC 9 cut(s) 98, 197, 248, 653, 702, 787, 982, 1724, 1819
PspPPI RGGWCCY 2 cut(s) 248, 787
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
PstNI CAGNNNCTG 1 cut(s) 1846
PsuI RGATCY 1 cut(s) 1366
PvuII CAGCTG 2 cut(s) 977, 1913
RsaI GTAC 9 cut(s) 338, 635, 776, 1029, 1223, 1460, 1493, 1513, 1541
RsaNI GTAC 9 cut(s) 337, 634, 775, 1028, 1222, 1459, 1492, 1512, 1540
RseI CAYNNNNRTG 3 cut(s) 990, 1530, 1647
SaqAI TTAA 5 cut(s) 771, 930, 951, 1139, 1958
SatI GCNGC 5 cut(s) 692, 1248, 1338, 1593, 2114
Sau96I GGNCC 9 cut(s) 98, 197, 248, 653, 702, 787, 982, 1724, 1819
SchI GAGTC 3 cut(s) 648, 1768, 2063
SduI GDGCHC 4 cut(s) 135, 484, 1195, 1972
SexAI ACCWGGT 1 cut(s) 698
SfaNI GCATC 4 cut(s) 148, 368, 426, 678
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 1376
SinI GGWCC 6 cut(s) 197, 248, 702, 787, 982, 1819
SmiMI CAYNNNNRTG 3 cut(s) 990, 1530, 1647
SmlI CTYRAG 3 cut(s) 381, 623, 1957
SmoI CTYRAG 3 cut(s) 381, 623, 1957
SphI GCATGC 2 cut(s) 401, 1078
Sse9I AATT 8 cut(s) 263, 410, 558, 768, 1394, 1681, 2007, 2047
SseBI AGGCCT 1 cut(s) 1602
SsiI CCGC 3 cut(s) 651, 1078, 2113
SspI AATATT 1 cut(s) 1829
StuI AGGCCT 1 cut(s) 1602
StyI CCWWGG 1 cut(s) 1559
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 7 cut(s) 426, 447, 648, 1033, 1233, 1255, 1866
TaqI TCGA 6 cut(s) 90, 999, 1033, 1376, 1834, 2120
TaqII GACCGA 1 cut(s) 1865
TasI AATT 8 cut(s) 263, 410, 558, 768, 1394, 1681, 2007, 2047
TatI WGTACW 2 cut(s) 336, 774
TauI GCSGC 1 cut(s) 2116
TfiI GAWTC 4 cut(s) 875, 882, 1081, 1134
Tru1I TTAA 5 cut(s) 771, 930, 951, 1139, 1958
Tru9I TTAA 5 cut(s) 771, 930, 951, 1139, 1958
TscAI CASTG 6 cut(s) 291, 331, 805, 1291, 1756, 1795
TseI GCWGC 4 cut(s) 691, 1247, 1337, 1592
TspDTI ATGAA 6 cut(s) 10, 230, 649, 893, 1407, 1644
TspGWI ACGGA 1 cut(s) 1508
TspRI CASTG 6 cut(s) 291, 331, 805, 1291, 1756, 1795
Van91I CCANNNNNTGG 1 cut(s) 1441
Vha464I CTTAAG 1 cut(s) 1957
VneI GTGCAC 1 cut(s) 480
VpaK11BI GGWCC 6 cut(s) 197, 248, 702, 787, 982, 1819
XapI RAATTY 3 cut(s) 410, 1394, 1681
XbaI TCTAGA 2 cut(s) 127, 673
XceI RCATGY 2 cut(s) 401, 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 1763
XmiI GTMKAC 4 cut(s) 190, 816, 957, 1305
XmnI GAANNNNTTC 1 cut(s) 2066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.