RchiOBHm_Chr4g0438801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016753
Physical Location & Seq
Reverse (-)
61393424 .. 61394353
930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40690

Sequence Viewer

Length: 783 bp
ATGCCCCATACATTTCATACTGAATTAACTAGTAATGTAAATTACATACTAGGGTTTGGAATCGTGAGGACAGCAACGATGGAAGAGAATGAAGACGGCGGCGTCTACTATGACTGCTACAAGGTGTCACCGTCCCTGACATATTCTGTGGACATCTGTAAGGATGTTCTCTGCAATGTCGATCAACTGAAATTACTGAATCTCGAACTTACCTCAGTGTTGCTACCGGGTTTTGCTGTTCATGGCCTTGTATGCAAATTGAAAGGGGAGCAACTGGAAGTTTCAATCGCTCCAAATACAAAGCCTCCGCAGTATTTTGTCTTCCGAAGGGCTGCGAATGCTCTTGTTACTGTCTCAAATGGTTTCCCTGCAGACTTGGCATTGAAAGTACTGTCAGGCGATATGGAGATAGCCGCCCACCACATGAAACACAGTCGGGTTAATCATGAAGTATTGCATAAACGGCACATCAATTTTATTCGCCTACATCGTGAGTATGAACTTGGTCGCAAGTTGCCCTGTGCTGTACTTGAACATTATGAACACTGTATTTTTCTTGTGGCAAATCCAATAGTACGTCGACTAATGGGCCAACTCATAATGCGATACATTTTTGGCGGCTCTGATTTTGAACCCGTGGCCAATGAGAAGGTGCAATATTATGAGCGGTACAAGGATCGCCCATGTCGCTTCTTGAGTATGACCCCGGTTTTCACGTTCAGAGATGATGCTACGATGGAAGCACCAAATGATGAAATGCGCAATCTTAATCTGAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.8

Weight (kDa)

6.86

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
Acc16I TGCGCA 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 2 cut(s) 105, 580
AciI CCGC 5 cut(s) 99, 308, 414, 618, 667
AclWI GGATC 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 639
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 4 cut(s) 390, 528, 576, 671
AgsI TTSAA 5 cut(s) 262, 285, 385, 533, 632
AhlI ACTAGT 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 1 cut(s) 684
AoxI GGCC 3 cut(s) 244, 589, 639
ApeKI GCWGC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 762
AspS9I GGNCC 1 cut(s) 589
AsuC2I CCSGG 2 cut(s) 228, 707
AsuHPI GGTGA 1 cut(s) 120
BalI TGGCCA 1 cut(s) 641
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BbsI GAAGAC 2 cut(s) 99, 313
BbvI GCAGC 1 cut(s) 319
BccI CCATC 2 cut(s) 73, 730
BceAI ACGGC 2 cut(s) 112, 479
BcnI CCSGG 2 cut(s) 228, 707
BcoDI GTCTC 1 cut(s) 358
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 2 cut(s) 30, 50
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 4 cut(s) 100, 333, 414, 619
BlsI GCNGC 4 cut(s) 101, 334, 415, 620
BmcAI AGTACT 1 cut(s) 390
Bme1390I CCNGG 2 cut(s) 228, 707
BmgT120I GGNCC 1 cut(s) 589
BmrFI CCNGG 2 cut(s) 228, 707
BmsI GCATC 1 cut(s) 718
BpiI GAAGAC 2 cut(s) 99, 313
BpuEI CTTGAG 1 cut(s) 715
BpuMI CCSGG 2 cut(s) 228, 707
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 636, 705
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 636, 705
BseGI GGATG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 3 cut(s) 246, 591, 641
BsiSI CCGG 2 cut(s) 227, 707
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 3 cut(s) 246, 591, 641
Bsp143I GATC 2 cut(s) 181, 676
BspACI CCGC 5 cut(s) 99, 308, 414, 618, 667
BspANI GGCC 3 cut(s) 246, 591, 641
BspCNI CTCAG 1 cut(s) 227
BspHI TCATGA 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 684
BsrBI CCGCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 636, 705
BssMI GATC 2 cut(s) 181, 676
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 5 cut(s) 132, 352, 393, 434, 548
Bst6I CTCTTC 2 cut(s) 78, 770
BstACI GRCGYC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 762
BstKTI GATC 2 cut(s) 184, 679
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 2 cut(s) 181, 676
BstMWI GCNNNNNNNGC 5 cut(s) 252, 338, 377, 463, 687
BstSCI CCNGG 2 cut(s) 226, 705
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 2 cut(s) 99, 313
BsuRI GGCC 3 cut(s) 246, 591, 641
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 222, 544
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 762
Cfr13I GGNCC 1 cut(s) 589
CseI GACGC 1 cut(s) 91
Csp6I GTAC 4 cut(s) 389, 527, 575, 670
CviAII CATG 4 cut(s) 242, 424, 446, 684
CviJI RGCY 7 cut(s) 246, 304, 332, 413, 591, 621, 641
CviKI_1 RGCY 7 cut(s) 246, 304, 332, 413, 591, 621, 641
CviQI GTAC 4 cut(s) 389, 527, 575, 670
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 183, 678
DpnII GATC 2 cut(s) 181, 676
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 2 cut(s) 78, 770
EarI CTCTTC 2 cut(s) 78, 770
FaeI CATG 4 cut(s) 245, 427, 449, 687
FaqI GGGAC 1 cut(s) 118
FatI CATG 4 cut(s) 241, 423, 445, 683
FblI GTMKAC 2 cut(s) 105, 580
Fnu4HI GCNGC 4 cut(s) 100, 333, 414, 619
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 100, 333, 414, 619
FspBI CTAG 2 cut(s) 30, 50
FspI TGCGCA 1 cut(s) 761
GlaI GCGC 1 cut(s) 761
GluI GCNGC 4 cut(s) 100, 333, 414, 619
HaeIII GGCC 3 cut(s) 246, 591, 641
HapII CCGG 2 cut(s) 227, 707
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 762
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 4 cut(s) 245, 427, 449, 687
Hin6I GCGC 1 cut(s) 760
HinP1I GCGC 1 cut(s) 760
HincII GTYRAC 1 cut(s) 581
HindII GTYRAC 1 cut(s) 581
HinfI GANTC 2 cut(s) 60, 199
HpaII CCGG 2 cut(s) 227, 707
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 3 cut(s) 106, 151, 581
Hpy188I TCNGA 4 cut(s) 326, 625, 722, 774
Hpy188III TCNNGA 5 cut(s) 64, 203, 446, 491, 694
Hpy8I GTNNAC 3 cut(s) 106, 151, 581
Hpy99I CGWCG 1 cut(s) 582
HpyAV CCTTC 2 cut(s) 321, 643
HpyCH4III ACNGT 5 cut(s) 132, 352, 393, 434, 548
HpyCH4IV ACGT 2 cut(s) 577, 716
HpyCH4V TGCA 5 cut(s) 174, 255, 371, 457, 655
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 338, 377, 463, 687
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 2 cut(s) 577, 716
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 245, 427, 449, 687
HspAI GCGC 1 cut(s) 760
Kzo9I GATC 2 cut(s) 181, 676
LmnI GCTCC 2 cut(s) 268, 295
LpnPI CCDG 7 cut(s) 149, 240, 260, 381, 381, 532, 720
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 718
MaeI CTAG 2 cut(s) 30, 50
MaeII ACGT 2 cut(s) 577, 716
MaeIII GTNAC 2 cut(s) 126, 346
MalI GATC 2 cut(s) 183, 678
MbiI CCGCTC 1 cut(s) 667
MboI GATC 2 cut(s) 181, 676
MboII GAAGA 3 cut(s) 95, 104, 313
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 5 cut(s) 23, 40, 191, 257, 472
MluNI TGGCCA 1 cut(s) 641
MnlI CCTC 3 cut(s) 60, 223, 315
Mox20I TGGCCA 1 cut(s) 641
MscI TGGCCA 1 cut(s) 641
MseI TTAA 3 cut(s) 26, 441, 768
Msp20I TGGCCA 1 cut(s) 641
MspI CCGG 2 cut(s) 227, 707
MspR9I CCNGG 2 cut(s) 228, 707
Mva1269I GAATGC 1 cut(s) 343
MwoI GCNNNNNNNGC 5 cut(s) 252, 338, 377, 463, 687
NciI CCSGG 2 cut(s) 228, 707
NdeII GATC 2 cut(s) 181, 676
NlaIII CATG 4 cut(s) 245, 427, 449, 687
NmuCI GTSAC 1 cut(s) 126
NsbI TGCGCA 1 cut(s) 761
PagI TCATGA 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 487
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 60, 199
PkrI GCNGC 4 cut(s) 101, 334, 415, 620
PspPI GGNCC 1 cut(s) 589
PstI CTGCAG 1 cut(s) 373
RsaI GTAC 4 cut(s) 390, 528, 576, 671
RsaNI GTAC 4 cut(s) 389, 527, 575, 670
SalI GTCGAC 1 cut(s) 579
SaqAI TTAA 3 cut(s) 26, 441, 768
SatI GCNGC 4 cut(s) 100, 333, 414, 619
Sau3AI GATC 2 cut(s) 181, 676
Sau96I GGNCC 1 cut(s) 589
ScaI AGTACT 1 cut(s) 390
ScrFI CCNGG 2 cut(s) 228, 707
SetI ASST 5 cut(s) 126, 215, 580, 654, 719
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 5 cut(s) 23, 40, 191, 257, 472
SsiI CCGC 5 cut(s) 99, 308, 414, 618, 667
SspI AATATT 1 cut(s) 659
SspMI CTAG 2 cut(s) 30, 50
StyD4I CCNGG 2 cut(s) 226, 705
TaaI ACNGT 5 cut(s) 132, 352, 393, 434, 548
TaiI ACGT 2 cut(s) 580, 719
TaqI TCGA 3 cut(s) 180, 204, 580
TasI AATT 5 cut(s) 23, 40, 191, 257, 472
TatI WGTACW 2 cut(s) 388, 526
TauI GCSGC 3 cut(s) 102, 416, 621
TfiI GAWTC 2 cut(s) 60, 199
Tru1I TTAA 3 cut(s) 26, 441, 768
Tru9I TTAA 3 cut(s) 26, 441, 768
TscAI CASTG 2 cut(s) 222, 551
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 8 cut(s) 5, 105, 230, 440, 462, 513, 555, 768
TspRI CASTG 2 cut(s) 222, 551
XmiI GTMKAC 2 cut(s) 105, 580
XspI CTAG 2 cut(s) 30, 50
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.