Rroxscaffold_7G00211900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016753
Physical Location & Seq
Forward (+)
62312413 .. 62314399
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211900.1

Sequence Viewer

Length: 573 bp
ATGGAAGAGAATGAAGACTGCGGCGTCGACAATGACTGCTACAAGGTGTCACCGTCCCTGACATATTCTAAGAACATCTGTAAGGATGTTCTCTGCAATGTCGATAAACTGAATCTCGAACTTACTTCAGTGTTGCAACCGGGTTTTGCTGTTCACGGCCTTGTATGCAAATTGAAAGGGGAGCAACTGGAAGTTTCAATCGCTCCAAATACAAAGCCTCCGCAGTATTTTGTCTTCCGAAGGGCTGCGAATGCTCTTGTTGCTGTCTCAAATGGTTTCCCTGCAGACTTGGAAGTATTGCATAAACGGCACATCAATTTTATTCGCCTACATCGTGAGTATGAACTTGGTCGCAAGTTGCCCTGTGCTGTACTTAAACATTATGAACACTGTATTTTTCTTGTGGCAAATCCACTAGTACGTCGACTAATGGGCCAACTCATAATGCGATACATTTTTGGCGGCTCTGATTTTGAACCCTGGGCCAATATGGTGGTGCAATCTTATGAGCGGTTCAAGGATCGGCCCATGTTGCTTCTTGAGTATGACCCCGCTTTACACGTGCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.88

Weight (kDa)

8.14

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 511
AccI GTMKAC 2 cut(s) 27, 424
AciI CCGC 6 cut(s) 21, 221, 462, 511, 552, 565
AclWI GGATC 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 111
AcvI CACGTG 1 cut(s) 562
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 372, 420
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 4 cut(s) 175, 198, 476, 517
AhlI ACTAGT 1 cut(s) 415
AjnI CCWGG 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 528
AoxI GGCC 4 cut(s) 157, 433, 483, 524
ApeKI GCWGC 1 cut(s) 245
AspS9I GGNCC 3 cut(s) 433, 483, 525
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 42
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbrPI CACGTG 1 cut(s) 562
BbsI GAAGAC 2 cut(s) 21, 226
BbvI GCAGC 1 cut(s) 232
BceAI ACGGC 2 cut(s) 172, 323
BciT130I CCWGG 1 cut(s) 481
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 271
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 3 cut(s) 22, 246, 463
BlsI GCNGC 3 cut(s) 23, 247, 464
Bme1390I CCNGG 2 cut(s) 141, 481
BmgT120I GGNCC 3 cut(s) 433, 483, 525
BmrFI CCNGG 2 cut(s) 141, 481
BpiI GAAGAC 2 cut(s) 21, 226
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 479, 480
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 2 cut(s) 479, 480
BseGI GGATG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 4 cut(s) 159, 435, 485, 526
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 4 cut(s) 159, 435, 485, 526
Bsp143I GATC 1 cut(s) 520
BspACI CCGC 6 cut(s) 21, 221, 462, 511, 552, 565
BspANI GGCC 4 cut(s) 159, 435, 485, 526
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 528
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 479, 480
BssMI GATC 1 cut(s) 520
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 2 cut(s) 54, 392
BstACI GRCGYC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 562
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 1 cut(s) 520
BstMWI GCNNNNNNNGC 5 cut(s) 165, 251, 260, 307, 532
BstNI CCWGG 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 139, 479
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 2 cut(s) 21, 226
BstXI CCANNNNNNTGG 1 cut(s) 493
BsuRI GGCC 4 cut(s) 159, 435, 485, 526
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 135, 388
Cfr13I GGNCC 3 cut(s) 433, 483, 525
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 371, 419
CviAII CATG 1 cut(s) 529
CviJI RGCY 7 cut(s) 159, 217, 245, 435, 465, 485, 526
CviKI_1 RGCY 7 cut(s) 159, 217, 245, 435, 465, 485, 526
CviQI GTAC 2 cut(s) 371, 419
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 111
Eco72I CACGTG 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 479
FaeI CATG 1 cut(s) 532
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 528
FauI CCCGC 1 cut(s) 559
FblI GTMKAC 2 cut(s) 27, 424
Fnu4HI GCNGC 3 cut(s) 22, 246, 463
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 3 cut(s) 22, 246, 463
FspBI CTAG 1 cut(s) 416
GluI GCNGC 3 cut(s) 22, 246, 463
HaeIII GGCC 4 cut(s) 159, 435, 485, 526
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 1 cut(s) 532
HincII GTYRAC 2 cut(s) 28, 425
HindII GTYRAC 2 cut(s) 28, 425
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 3 cut(s) 28, 154, 425
Hpy188I TCNGA 2 cut(s) 239, 469
Hpy188III TCNNGA 3 cut(s) 116, 335, 539
Hpy8I GTNNAC 3 cut(s) 28, 154, 425
Hpy99I CGWCG 2 cut(s) 29, 426
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 54, 392
HpyCH4IV ACGT 2 cut(s) 421, 561
HpyCH4V TGCA 6 cut(s) 96, 136, 168, 284, 301, 499
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 251, 260, 307, 532
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 421, 561
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 532
Kzo9I GATC 1 cut(s) 520
LmnI GCTCC 2 cut(s) 181, 208
LpnPI CCDG 7 cut(s) 71, 153, 173, 294, 376, 466, 493
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 1 cut(s) 416
MaeII ACGT 2 cut(s) 421, 561
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 522
MbiI CCGCTC 1 cut(s) 511
MboI GATC 1 cut(s) 520
MboII GAAGA 3 cut(s) 17, 26, 226
MluCI AATT 2 cut(s) 170, 316
MnlI CCTC 1 cut(s) 228
MseI TTAA 1 cut(s) 375
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 141, 481
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 5 cut(s) 165, 251, 260, 307, 532
NciI CCSGG 1 cut(s) 141
NdeII GATC 1 cut(s) 520
NlaIII CATG 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 48
PasI CCCWGGG 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 3 cut(s) 23, 247, 464
PmaCI CACGTG 1 cut(s) 562
PmlI CACGTG 1 cut(s) 562
Ppu21I YACGTR 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 479
PspCI CACGTG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 479
PspPI GGNCC 3 cut(s) 433, 483, 525
PstI CTGCAG 1 cut(s) 286
RsaI GTAC 2 cut(s) 372, 420
RsaNI GTAC 2 cut(s) 371, 419
SalI GTCGAC 2 cut(s) 26, 423
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 3 cut(s) 22, 246, 463
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 3 cut(s) 433, 483, 525
ScrFI CCNGG 2 cut(s) 141, 481
SetI ASST 3 cut(s) 48, 424, 564
SfcI CTRYAG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 2 cut(s) 170, 316
SsiI CCGC 6 cut(s) 21, 221, 462, 511, 552, 565
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 2 cut(s) 139, 479
TaaI ACNGT 2 cut(s) 54, 392
TaiI ACGT 2 cut(s) 424, 564
TaqI TCGA 4 cut(s) 27, 102, 117, 424
TasI AATT 2 cut(s) 170, 316
TatI WGTACW 1 cut(s) 370
TauI GCSGC 2 cut(s) 24, 465
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 2 cut(s) 135, 395
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 27, 357, 399
TspRI CASTG 2 cut(s) 135, 395
XmiI GTMKAC 2 cut(s) 27, 424
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.