Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005439.1

Orthogroup ID

OG0016753

Physical Location & Seq

Genomic Coordinates Forward (+)

5849 .. 6332

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005439.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggacgacgacgacatctactccagcactgagtcactcttccgagtccagcagatctatcagaggcaaagttctgccggaggattaatgagcttaaggcttcacatagggagattatggttgagtcttccaaatcttgatattaccaggaagaactggaaactgtcaattccacagttggctggtgcggtatgggaagcctgttctgctattaaggagaccccagacaaggttggctggttttttcactaccaaggttgcagtcacgtcatggttggacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCIP

Protein Analysis

94

Amino Acids

10.76

Weight (kDa)

7.83

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10700
rosa_chinensis	RchiOBHm_Chr4g0438801
rosa_laevigata	RLG00000015020
rosa_multiflora	Rmu_sc0005439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211900 Rroxscaffold_7G00211910
rosa_rugosa	Rorug05G0544100 Rorug05G0544200
rosa_samantha	Rh4AG364200 Rh4DG369900 Rh6AG059100 Rh6BG052600 Rh6CG050300 Rh6DG047000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflII	CTTAAG	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	94
BglII	AGATCT	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	165, 177
Bst6I	CTCTTC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	27
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	5 cut(s)	93, 100, 182, 200, 237
CviKI_1	RGCY	5 cut(s)	93, 100, 182, 200, 237
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	274
FaiI	YATR	4 cut(s)	107, 118, 193, 272
FatI	CATG	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	7
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	274
HinfI	GANTC	3 cut(s)	32, 45, 124
HpaII	CCGG	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	44, 63
Hpy188III	TCNNGA	1 cut(s)	137
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyCH4III	ACNGT	2 cut(s)	165, 177
HpyCH4IV	ACGT	2 cut(s)	267, 280
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	267, 280
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	54
MaeII	ACGT	2 cut(s)	267, 280
MaeIII	GTNAC	2 cut(s)	33, 263
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	3 cut(s)	31, 119, 163
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	41, 54, 133
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	2 cut(s)	57, 74
MseI	TTAA	3 cut(s)	86, 95, 213
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	33, 263
PleI	GAGTC	3 cut(s)	40, 53, 132
PpsI	GAGTC	3 cut(s)	40, 53, 132
PshBI	ATTAAT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	86, 95, 213
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	3 cut(s)	41, 54, 133
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	5 cut(s)	95, 234, 259, 270, 283
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	165, 177
TaiI	ACGT	2 cut(s)	270, 283
TasI	AATT	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	86, 95, 213
Tru9I	TTAA	3 cut(s)	86, 95, 213
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	33, 263
Tsp45I	GTSAC	2 cut(s)	33, 263
TspRI	CASTG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.