Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016753

Physical Location & Seq

Genomic Coordinates Reverse (-)

67266576 .. 67267280

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG364200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAAGAGAATGAAGACGGCGGCGTCTACTATGACTGCTACAAGGTGTCACCGTCCCTGACATATTCTGTGGACATCTGTAAGGATGTTCTCTGCAATGTCGATCAACTGAAATTACTGAATCTCGAACTTACCTCAGTGTTGCTACCGGGTTTTGCTGTTCATGGCCTTGTATGCAAATTGAAAGGGGAGCAACTGGAAGTTTCAATCGCTCCAAATACAAAGCCTCCGCAGTATTTTGTCTTCCGAAGGGCTGCGAATGCTCTTGTTACTGTCTCAAATGGTTTCCCTGCAGACTTGGCATTGAAAGTACTGTCAGGCGATATGGAGATAGCCGCCCACCACATGAAACACAGTCGGGTTAATCATGAAGTATTGCATAAACGGCACATCAATTTTATTCGCCTACATCGTGAGTATGAACTTGGTCGCAAGTTGCCCTGTGCTGTACTTGAACATTATGAACACTGTATTTTTCTTGTGGCAAATCCAATAGTACGTCGACTAATGGGCCAACTCATAATGCGATACATTTTTGGCGGCTCTGATTTTGAACCCGTGGCCAATGAGAAGGTGCAATATTATGAGCGGTACAAGGATCGCCCATGTCGCTTCTTGAGTATGACCCCGGTTTTCACGTTCAGAGATGATGCTACGATGGAAGCACCAAATGATGAAATGCGCAATCTTAATCTGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.89

Weight (kDa)

6.79

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10700
rosa_chinensis	RchiOBHm_Chr4g0438801
rosa_laevigata	RLG00000015020
rosa_multiflora	Rmu_sc0005439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211900 Rroxscaffold_7G00211910
rosa_rugosa	Rorug05G0544100 Rorug05G0544200
rosa_samantha	Rh4AG364200 Rh4DG369900 Rh6AG059100 Rh6BG052600 Rh6CG050300 Rh6DG047000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
Acc16I	TGCGCA	1 cut(s)	683
AccBSI	CCGCTC	1 cut(s)	589
AccI	GTMKAC	2 cut(s)	27, 502
AciI	CCGC	5 cut(s)	21, 230, 336, 540, 589
AclWI	GGATC	1 cut(s)	606
AcoI	YGGCCR	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	4 cut(s)	312, 450, 498, 593
AgsI	TTSAA	5 cut(s)	184, 207, 307, 455, 554
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	606
AoxI	GGCC	3 cut(s)	166, 511, 561
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	2 cut(s)	150, 629
AsuHPI	GGTGA	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	563
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	2 cut(s)	21, 235
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	2 cut(s)	34, 401
BcnI	CCSGG	2 cut(s)	150, 629
BcoDI	GTCTC	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	4 cut(s)	22, 255, 336, 541
BlsI	GCNGC	4 cut(s)	23, 256, 337, 542
BmcAI	AGTACT	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	150, 629
BmgT120I	GGNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	150, 629
BmsI	GCATC	1 cut(s)	640
BpiI	GAAGAC	2 cut(s)	21, 235
BpuEI	CTTGAG	1 cut(s)	637
BpuMI	CCSGG	2 cut(s)	150, 629
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	558, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	558, 627
BseGI	GGATG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	3 cut(s)	168, 513, 563
BsiSI	CCGG	2 cut(s)	149, 629
BslFI	GGGAC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	168, 513, 563
Bsp143I	GATC	2 cut(s)	103, 598
BspACI	CCGC	5 cut(s)	21, 230, 336, 540, 589
BspANI	GGCC	3 cut(s)	168, 513, 563
BspCNI	CTCAG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	606
BsrBI	CCGCTC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	558, 627
BssMI	GATC	2 cut(s)	103, 598
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	5 cut(s)	54, 274, 315, 356, 470
Bst6I	CTCTTC	1 cut(s)	692
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	2 cut(s)	106, 601
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	2 cut(s)	103, 598
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 260, 299, 385, 609
BstSCI	CCNGG	2 cut(s)	148, 627
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	21, 235
BsuRI	GGCC	3 cut(s)	168, 513, 563
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	144, 466
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	511
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	311, 449, 497, 592
CviAII	CATG	4 cut(s)	164, 346, 368, 606
CviJI	RGCY	7 cut(s)	168, 226, 254, 335, 513, 543, 563
CviKI_1	RGCY	7 cut(s)	168, 226, 254, 335, 513, 543, 563
CviQI	GTAC	4 cut(s)	311, 449, 497, 592
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	2 cut(s)	105, 600
DpnII	GATC	2 cut(s)	103, 598
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	692
EarI	CTCTTC	1 cut(s)	692
FaeI	CATG	4 cut(s)	167, 349, 371, 609
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	163, 345, 367, 605
FblI	GTMKAC	2 cut(s)	27, 502
Fnu4HI	GCNGC	4 cut(s)	22, 255, 336, 541
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	4 cut(s)	22, 255, 336, 541
FspI	TGCGCA	1 cut(s)	683
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	4 cut(s)	22, 255, 336, 541
HaeIII	GGCC	3 cut(s)	168, 513, 563
HapII	CCGG	2 cut(s)	149, 629
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	684
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	167, 349, 371, 609
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HincII	GTYRAC	1 cut(s)	503
HindII	GTYRAC	1 cut(s)	503
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	149, 629
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	3 cut(s)	28, 73, 503
Hpy188I	TCNGA	4 cut(s)	248, 547, 644, 696
Hpy188III	TCNNGA	4 cut(s)	125, 368, 413, 616
Hpy8I	GTNNAC	3 cut(s)	28, 73, 503
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	243, 565
HpyCH4III	ACNGT	5 cut(s)	54, 274, 315, 356, 470
HpyCH4IV	ACGT	2 cut(s)	499, 638
HpyCH4V	TGCA	5 cut(s)	96, 177, 293, 379, 577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 260, 299, 385, 609
HpyF3I	CTNAG	1 cut(s)	136
HpySE526I	ACGT	2 cut(s)	499, 638
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	167, 349, 371, 609
HspAI	GCGC	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	103, 598
LmnI	GCTCC	2 cut(s)	190, 217
LpnPI	CCDG	7 cut(s)	71, 162, 182, 303, 303, 454, 642
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	640
MaeII	ACGT	2 cut(s)	499, 638
MaeIII	GTNAC	2 cut(s)	48, 268
MalI	GATC	2 cut(s)	105, 600
MbiI	CCGCTC	1 cut(s)	589
MboI	GATC	2 cut(s)	103, 598
MboII	GAAGA	3 cut(s)	17, 26, 235
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	3 cut(s)	113, 179, 394
MluNI	TGGCCA	1 cut(s)	563
MnlI	CCTC	2 cut(s)	145, 237
Mox20I	TGGCCA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	2 cut(s)	363, 690
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	2 cut(s)	149, 629
MspR9I	CCNGG	2 cut(s)	150, 629
Mva1269I	GAATGC	1 cut(s)	265
MwoI	GCNNNNNNNGC	5 cut(s)	174, 260, 299, 385, 609
NciI	CCSGG	2 cut(s)	150, 629
NdeII	GATC	2 cut(s)	103, 598
NlaIII	CATG	4 cut(s)	167, 349, 371, 609
NmuCI	GTSAC	1 cut(s)	48
NsbI	TGCGCA	1 cut(s)	683
PagI	TCATGA	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	23, 256, 337, 542
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	4 cut(s)	312, 450, 498, 593
RsaNI	GTAC	4 cut(s)	311, 449, 497, 592
SalI	GTCGAC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	363, 690
SatI	GCNGC	4 cut(s)	22, 255, 336, 541
Sau3AI	GATC	2 cut(s)	103, 598
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	312
ScrFI	CCNGG	2 cut(s)	150, 629
SetI	ASST	5 cut(s)	48, 137, 502, 576, 641
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	3 cut(s)	113, 179, 394
SsiI	CCGC	5 cut(s)	21, 230, 336, 540, 589
SspI	AATATT	1 cut(s)	581
StyD4I	CCNGG	2 cut(s)	148, 627
TaaI	ACNGT	5 cut(s)	54, 274, 315, 356, 470
TaiI	ACGT	2 cut(s)	502, 641
TaqI	TCGA	3 cut(s)	102, 126, 502
TasI	AATT	3 cut(s)	113, 179, 394
TatI	WGTACW	2 cut(s)	310, 448
TauI	GCSGC	3 cut(s)	24, 338, 543
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	363, 690
Tru9I	TTAA	2 cut(s)	363, 690
TscAI	CASTG	2 cut(s)	144, 473
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	7 cut(s)	27, 152, 362, 384, 435, 477, 690
TspRI	CASTG	2 cut(s)	144, 473
XmiI	GTMKAC	2 cut(s)	27, 502
ZrmI	AGTACT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.