RLG00000015020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016753
Physical Location & Seq
Forward (+)
60724828 .. 60727938
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015020

Sequence Viewer

Length: 513 bp
ATGCCTTTGCTTTATGTAGTCGATCAACTGAAATTACTGAATCTCGAACTTACTTCAGTGTTGCTACCGGGTTTTGCTGTTCATGGCCTTGTATGCAAATTGAAAGGGGAGCAACTGGAAGTTTCAATCGCTCCAAATACAAAGCCTCCGCAGTATTTTGTCTTCCGAAGGGCTGCGAATGCTCTAGTTGCTGTCTCAAATGGTTTCCCTGCAGACTTGGCATTGAAAGTACTGTCAGGCGATATGGAGATAGCCGCCCACCACATGAAACACAGCCGGGTTAATCAGCCATCCTCATGGACGACGACGACAACTACTCCAGCACTGAGTCACTCTTCCGAGTCCAGCAGATCTATCAGAGGCAAAGTTCTGCCGGAGTTGGCTGTTTCGGTATCGGAAGCCTGTTCTGCTCTTAAGGAGACCCCAGACAAGGTTGGCTGGTTTTTTCACTACAAAGGTTGCAGTCACGTCATGGTTGGACGTGGGAAGGTCACCAAAAGTAGTTGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.46

Weight (kDa)

9.25

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 149, 255
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 430
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 3 cut(s) 103, 126, 226
AjiI CACGTC 2 cut(s) 469, 482
Alw26I GTCTC 2 cut(s) 199, 413
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 173
AsuC2I CCSGG 2 cut(s) 69, 278
AsuHPI GGTGA 1 cut(s) 484
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 298
BcnI CCSGG 2 cut(s) 69, 278
BcoDI GTCTC 2 cut(s) 199, 413
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 413
BglII AGATCT 1 cut(s) 350
BisI GCNGC 2 cut(s) 174, 255
BlsI GCNGC 2 cut(s) 175, 256
BmcAI AGTACT 1 cut(s) 231
Bme1390I CCNGG 2 cut(s) 69, 278
BmgBI CACGTC 2 cut(s) 469, 482
BmrFI CCNGG 2 cut(s) 69, 278
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 69, 278
BsaI GGTCTC 1 cut(s) 413
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 1 cut(s) 87
BsiSI CCGG 3 cut(s) 68, 277, 374
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 199, 413
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 22, 350
BspACI CCGC 2 cut(s) 149, 255
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 413
BsrI ACTGG 1 cut(s) 120
BssMI GATC 2 cut(s) 22, 350
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 413
BstDEI CTNAG 1 cut(s) 326
BstEII GGTNACC 1 cut(s) 490
BstF5I GGATG 1 cut(s) 290
BstKTI GATC 2 cut(s) 25, 353
BstMAI GTCTC 2 cut(s) 199, 413
BstMBI GATC 2 cut(s) 22, 350
BstMWI GCNNNNNNNGC 5 cut(s) 93, 179, 188, 218, 407
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 67, 276
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 1 cut(s) 87
BtrI CACGTC 2 cut(s) 469, 482
BtsCI GGATG 1 cut(s) 290
BtsIMutI CAGTG 2 cut(s) 63, 323
Csp6I GTAC 1 cut(s) 230
CviAII CATG 4 cut(s) 83, 265, 297, 472
CviJI RGCY 9 cut(s) 87, 145, 173, 254, 276, 289, 383, 401, 438
CviKI_1 RGCY 9 cut(s) 87, 145, 173, 254, 276, 289, 383, 401, 438
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 24, 352
DpnII GATC 2 cut(s) 22, 350
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 490
FaeI CATG 4 cut(s) 86, 268, 300, 475
FaiI YATR 7 cut(s) 15, 84, 94, 245, 266, 298, 473
FatI CATG 4 cut(s) 82, 264, 296, 471
Fnu4HI GCNGC 2 cut(s) 174, 255
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 174, 255
FspBI CTAG 1 cut(s) 185
GluI GCNGC 2 cut(s) 174, 255
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 87
HapII CCGG 3 cut(s) 68, 277, 374
Hin1II CATG 4 cut(s) 86, 268, 300, 475
HinfI GANTC 3 cut(s) 40, 328, 341
HpaII CCGG 3 cut(s) 68, 277, 374
HphI GGTGA 1 cut(s) 484
Hpy188I TCNGA 4 cut(s) 167, 340, 359, 397
Hpy188III TCNNGA 1 cut(s) 44
Hpy99I CGWCG 2 cut(s) 307, 310
HpyAV CCTTC 2 cut(s) 162, 481
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 2 cut(s) 468, 481
HpyCH4V TGCA 3 cut(s) 96, 212, 462
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 179, 188, 218, 407
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 468, 481
Hsp92II CATG 4 cut(s) 86, 268, 300, 475
Kzo9I GATC 2 cut(s) 22, 350
LmnI GCTCC 2 cut(s) 109, 136
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 185
MaeII ACGT 2 cut(s) 468, 481
MaeIII GTNAC 3 cut(s) 329, 464, 490
MalI GATC 2 cut(s) 24, 352
MboI GATC 2 cut(s) 22, 350
MboII GAAGA 2 cut(s) 154, 327
MflI RGATCY 1 cut(s) 350
MluCI AATT 2 cut(s) 32, 98
MlyI GAGTC 2 cut(s) 337, 350
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 3 cut(s) 156, 304, 353
MseI TTAA 2 cut(s) 282, 414
MslI CAYNNNNRTG 1 cut(s) 295
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 3 cut(s) 68, 277, 374
MspR9I CCNGG 2 cut(s) 69, 278
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 5 cut(s) 93, 179, 188, 218, 407
NciI CCSGG 2 cut(s) 69, 278
NdeII GATC 2 cut(s) 22, 350
NlaIII CATG 4 cut(s) 86, 268, 300, 475
NmuCI GTSAC 3 cut(s) 329, 464, 490
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 175, 256
PleI GAGTC 2 cut(s) 336, 349
PpsI GAGTC 2 cut(s) 336, 349
PspEI GGTNACC 1 cut(s) 490
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 295
SaqAI TTAA 2 cut(s) 282, 414
SatI GCNGC 2 cut(s) 174, 255
Sau3AI GATC 2 cut(s) 22, 350
ScaI AGTACT 1 cut(s) 231
SchI GAGTC 2 cut(s) 337, 350
ScrFI CCNGG 2 cut(s) 69, 278
SetI ASST 5 cut(s) 435, 460, 471, 484, 492
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 32, 98
SsiI CCGC 2 cut(s) 149, 255
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 67, 276
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 2 cut(s) 471, 484
TaqI TCGA 2 cut(s) 21, 45
TasI AATT 2 cut(s) 32, 98
TatI WGTACW 1 cut(s) 229
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 282, 414
Tru9I TTAA 2 cut(s) 282, 414
TscAI CASTG 2 cut(s) 63, 330
TseFI GTSAC 3 cut(s) 329, 464, 490
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 3 cut(s) 329, 464, 490
TspDTI ATGAA 2 cut(s) 71, 281
TspRI CASTG 2 cut(s) 63, 330
Vha464I CTTAAG 1 cut(s) 413
XspI CTAG 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.