Rroxscaffold_7G00211910

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
62322320 .. 62323612
1293 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00211910.1

Sequence Viewer

Length: 207 bp
ATGGACGACGACGATAACTACTCCAGCACTGAGTCCCTCTTCCGAGTCCAGCAGATCTATCAGAGGCAAAGTTCTGCCGGAGGAGCTATTGCCGGTATTGTTTCTGAAAAAGATCTTCTAGCCTGTGTCTTATACAGCCTTGCTCTCAAACCACAAATAGATGAGTGCATATTTTGCTCCCGCATTTTTCAGCCATCTTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.55

Weight (kDa)

4.34

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
BccI CCATC 1 cut(s) 202
BfaI CTAG 1 cut(s) 119
BglII AGATCT 2 cut(s) 54, 112
BpmI CTGGAG 1 cut(s) 7
Bse118I RCCGGY 1 cut(s) 92
BseMII CTCAG 2 cut(s) 21, 192
BseRI GAGGAG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 78, 93
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 54, 112
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 22, 193
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 2 cut(s) 54, 112
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 30, 201
BstKTI GATC 2 cut(s) 57, 115
BstMBI GATC 2 cut(s) 54, 112
BstMWI GCNNNNNNNGC 2 cut(s) 83, 174
BstX2I RGATCY 2 cut(s) 54, 112
BstYI RGATCY 2 cut(s) 54, 112
BtsIMutI CAGTG 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 92
CviJI RGCY 4 cut(s) 86, 122, 138, 193
CviKI_1 RGCY 4 cut(s) 86, 122, 138, 193
DdeI CTNAG 2 cut(s) 30, 201
DpnI GATC 2 cut(s) 56, 114
DpnII GATC 2 cut(s) 54, 112
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
FaiI YATR 2 cut(s) 133, 170
FaqI GGGAC 1 cut(s) 19
FauI CCCGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 7
HapII CCGG 2 cut(s) 78, 93
HinfI GANTC 2 cut(s) 32, 45
HpaII CCGG 2 cut(s) 78, 93
Hpy188I TCNGA 4 cut(s) 44, 63, 106, 202
Hpy99I CGWCG 2 cut(s) 11, 14
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 174
HpyF3I CTNAG 2 cut(s) 30, 201
Kzo9I GATC 2 cut(s) 54, 112
LmnI GCTCC 2 cut(s) 83, 182
LpnPI CCDG 5 cut(s) 37, 62, 91, 106, 136
MaeI CTAG 1 cut(s) 119
MalI GATC 2 cut(s) 56, 114
MboI GATC 2 cut(s) 54, 112
MboII GAAGA 3 cut(s) 31, 107, 189
MflI RGATCY 2 cut(s) 54, 112
MlyI GAGTC 2 cut(s) 41, 54
MnlI CCTC 3 cut(s) 47, 57, 74
MspI CCGG 2 cut(s) 78, 93
MwoI GCNNNNNNNGC 2 cut(s) 83, 174
NdeII GATC 2 cut(s) 54, 112
PleI GAGTC 2 cut(s) 40, 53
PpsI GAGTC 2 cut(s) 40, 53
PsuI RGATCY 2 cut(s) 54, 112
Sau3AI GATC 2 cut(s) 54, 112
SchI GAGTC 2 cut(s) 41, 54
SetI ASST 1 cut(s) 88
SgeI CNNG 9 cut(s) 36, 56, 61, 90, 105, 131, 135, 152, 192
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 119
TscAI CASTG 1 cut(s) 34
TspRI CASTG 1 cut(s) 34
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.