Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016753

Physical Location & Seq

Genomic Coordinates Reverse (-)

8894790 .. 8917768

Gene Structure 22979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAAGAGAATGAAGACGGCGGCGTCTACTATGACTGCTACAAGGTGTCACCGTCCCTGACATATTCTGTAAACATCTGTGAGGATGTTCACTGCAATGTCGATCAACTGAAATTACTGAATCTCGAACTTACTTCAGTGTTGCTACCGGCTTTTGCTGTTCATGGCCTTGTATGCAAATTGAAAGGGGAGCAACTGGAAGTTTCAATCGCTCCAAATACAAAGCCTCCGCAGTATTTTGTCTTCCAAAGGGCTGCGAATGCTCTTGTTGCTGTCTCAAATGGTTTCCCTGCAGACTTGGCATTGAAAGTACTGTCAGGCGATATGGAGATAGCCGCCCACCACATGAAACACAGGCGGGTTAATCAGGTACTACTCCAGTACGTACTCCATAACTGTAAGGAAATTTTCATCAATTGGTTTGGAATCGTGAGGACAGCGACGATGGAAGAGAATGAAGACGGCGGCGTCTACTATGACTGCTACAAGGTGTCACCGTCCCTGACATATTCTGTGGACATCTGTAAGGATGTTCTCTGCAATGTCGATCAACTGAAATTACTGAATCTCGAACTTACTTCAGTGTTGCTACCGGGTTTTGCTGTTCATGGCCTTGTATGCAAATTGAAAGGGGAGCAACTGGAAGTTTCAATCGCTCCAAATACAAAGCCTCCGCAGTATTTTGTCTTCCGAAGGGCTGCGAATGCTCTTGTTGCTGTCTCAAATGGTTTCCCTGCAGACTTGGCATTGAAAGTACTGTCAGGCGATATGGAGATAGCCGCCCACCACATGAAACACAGTCGGGTTAATCAGGAAGTATTGCATAAACGGCACATCAATTTTATTCGCCTACATCGTGAGTATGAACTTGGTCGCAAGTTGCCCTGTGATGTACTCGAACATTATGAACACTGTATTTTTCTTGTGGCAAATCCAATAGTACGTCGACTAATGGGCCAACTCATAATGCGATACATTTTTGGCGGCTCTGATTTTGAACCCGTGGCCAATGAGAAGGTGCAATATTATGAGCGGTACAAGGATCGCCCGTGTCGCTTCTTGAGTATGACCCCGGTTTACACGTTCAGAGATGATGCTACGATGGAAGCACCAAATGATGAAATGTGCAATCTTAATCTGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

43.4

Weight (kDa)

6.21

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10700
rosa_chinensis	RchiOBHm_Chr4g0438801
rosa_laevigata	RLG00000015020
rosa_multiflora	Rmu_sc0005439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211900 Rroxscaffold_7G00211910
rosa_rugosa	Rorug05G0544100 Rorug05G0544200
rosa_samantha	Rh4AG364200 Rh4DG369900 Rh6AG059100 Rh6BG052600 Rh6CG050300 Rh6DG047000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 467
AccBSI	CCGCTC	1 cut(s)	1033
AccI	GTMKAC	3 cut(s)	27, 471, 946
AciI	CCGC	9 cut(s)	21, 230, 336, 358, 465, 674, 780, 984, 1033
AclWI	GGATC	1 cut(s)	1050
AcoI	YGGCCR	1 cut(s)	1005
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	2 cut(s)	120, 564
AcyI	GRCGYC	2 cut(s)	24, 468
AfaI	GTAC	8 cut(s)	312, 372, 383, 387, 756, 894, 942, 1037
AflIII	ACRYGT	1 cut(s)	1080
AgsI	TTSAA	7 cut(s)	184, 207, 307, 628, 651, 751, 998
Alw26I	GTCTC	2 cut(s)	280, 724
AlwI	GGATC	1 cut(s)	1050
AoxI	GGCC	4 cut(s)	166, 610, 955, 1005
ApeKI	GCWGC	2 cut(s)	254, 698
ApoI	RAATTY	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	955
AsuC2I	CCSGG	2 cut(s)	594, 1073
AsuHPI	GGTGA	2 cut(s)	42, 486
BalI	TGGCCA	1 cut(s)	1007
BarI	GAAGNNNNNNTAC	4 cut(s)	227, 259, 671, 703
BbsI	GAAGAC	4 cut(s)	21, 235, 465, 679
BbvI	GCAGC	2 cut(s)	241, 685
BccI	CCATC	2 cut(s)	439, 1096
BceAI	ACGGC	3 cut(s)	34, 478, 845
BcnI	CCSGG	2 cut(s)	594, 1073
BcoDI	GTCTC	2 cut(s)	280, 724
BfmI	CTRYAG	2 cut(s)	291, 735
BisI	GCNGC	7 cut(s)	22, 255, 336, 466, 699, 780, 985
BlsI	GCNGC	7 cut(s)	23, 256, 337, 467, 700, 781, 986
BmcAI	AGTACT	2 cut(s)	312, 756
Bme1390I	CCNGG	2 cut(s)	594, 1073
BmgT120I	GGNCC	1 cut(s)	955
BmrFI	CCNGG	2 cut(s)	594, 1073
BmsI	GCATC	1 cut(s)	1084
BpiI	GAAGAC	4 cut(s)	21, 235, 465, 679
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	1081
BpuMI	CCSGG	2 cut(s)	594, 1073
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	24, 468
BsaJI	CCNNGG	2 cut(s)	1002, 1071
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 655, 685
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	201, 379, 645
Bse3DI	GCAATG	2 cut(s)	103, 547
BseDI	CCNNGG	2 cut(s)	1002, 1071
BseGI	GGATG	2 cut(s)	91, 535
BseMI	GCAATG	2 cut(s)	103, 547
BseNI	ACTGG	3 cut(s)	201, 379, 645
BseXI	GCAGC	2 cut(s)	241, 685
BshFI	GGCC	4 cut(s)	168, 612, 957, 1007
BsiSI	CCGG	3 cut(s)	149, 593, 1073
BslFI	GGGAC	2 cut(s)	40, 484
BsmAI	GTCTC	2 cut(s)	280, 724
BsmFI	GGGAC	2 cut(s)	40, 484
BsmI	GAATGC	2 cut(s)	265, 709
BsnI	GGCC	4 cut(s)	168, 612, 957, 1007
Bsp143I	GATC	3 cut(s)	103, 547, 1042
BspACI	CCGC	9 cut(s)	21, 230, 336, 358, 465, 674, 780, 984, 1033
BspANI	GGCC	4 cut(s)	168, 612, 957, 1007
BspMAI	CTGCAG	2 cut(s)	295, 739
BspPI	GGATC	1 cut(s)	1050
BsrBI	CCGCTC	1 cut(s)	1033
BsrDI	GCAATG	2 cut(s)	103, 547
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	201, 379, 645
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	1002, 1071
BssMI	GATC	3 cut(s)	103, 547, 1042
BssNI	GRCGYC	2 cut(s)	24, 468
Bst4CI	ACNGT	7 cut(s)	54, 315, 398, 498, 759, 800, 914
Bst6I	CTCTTC	2 cut(s)	444, 1136
BstACI	GRCGYC	2 cut(s)	24, 468
BstBAI	YACGTR	1 cut(s)	385
BstDSI	CCRYGG	1 cut(s)	1002
BstF5I	GGATG	2 cut(s)	91, 535
BstKTI	GATC	3 cut(s)	106, 550, 1045
BstMAI	GTCTC	2 cut(s)	280, 724
BstMBI	GATC	3 cut(s)	103, 547, 1042
BstSCI	CCNGG	2 cut(s)	592, 1071
BstSFI	CTRYAG	2 cut(s)	291, 735
BstSNI	TACGTA	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	241, 685
BstV2I	GAAGAC	4 cut(s)	21, 235, 465, 679
BsuRI	GGCC	4 cut(s)	168, 612, 957, 1007
BtgI	CCRYGG	1 cut(s)	1002
BtsCI	GGATG	2 cut(s)	91, 535
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	4 cut(s)	91, 144, 588, 910
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	955
CseI	GACGC	2 cut(s)	13, 457
Csp6I	GTAC	8 cut(s)	311, 371, 382, 386, 755, 893, 941, 1036
CviAII	CATG	4 cut(s)	164, 346, 608, 790
CviQI	GTAC	8 cut(s)	311, 371, 382, 386, 755, 893, 941, 1036
DpnI	GATC	3 cut(s)	105, 549, 1044
DpnII	GATC	3 cut(s)	103, 547, 1042
DrdI	GACNNNNNNGTC	2 cut(s)	23, 467
DseDI	GACNNNNNNGTC	2 cut(s)	23, 467
EaeI	YGGCCR	1 cut(s)	1005
Eam1104I	CTCTTC	2 cut(s)	444, 1136
EarI	CTCTTC	2 cut(s)	444, 1136
Eco105I	TACGTA	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	120, 564
FaeI	CATG	4 cut(s)	167, 349, 611, 793
FaqI	GGGAC	2 cut(s)	40, 484
FatI	CATG	4 cut(s)	163, 345, 607, 789
FauI	CCCGC	1 cut(s)	351
FblI	GTMKAC	3 cut(s)	27, 471, 946
Fnu4HI	GCNGC	7 cut(s)	22, 255, 336, 466, 699, 780, 985
FokI	GGATG	2 cut(s)	98, 542
Fsp4HI	GCNGC	7 cut(s)	22, 255, 336, 466, 699, 780, 985
GluI	GCNGC	7 cut(s)	22, 255, 336, 466, 699, 780, 985
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	4 cut(s)	168, 612, 957, 1007
HapII	CCGG	3 cut(s)	149, 593, 1073
HgaI	GACGC	2 cut(s)	13, 457
Hin1I	GRCGYC	2 cut(s)	24, 468
Hin1II	CATG	4 cut(s)	167, 349, 611, 793
HincII	GTYRAC	1 cut(s)	947
HindII	GTYRAC	1 cut(s)	947
HinfI	GANTC	3 cut(s)	121, 426, 565
HpaII	CCGG	3 cut(s)	149, 593, 1073
HphI	GGTGA	2 cut(s)	42, 486
Hpy166II	GTNNAC	7 cut(s)	28, 73, 91, 472, 517, 947, 1078
Hpy188I	TCNGA	4 cut(s)	692, 991, 1088, 1140
Hpy188III	TCNNGA	6 cut(s)	125, 430, 569, 812, 857, 1060
Hpy8I	GTNNAC	7 cut(s)	28, 73, 91, 472, 517, 947, 1078
Hpy99I	CGWCG	2 cut(s)	445, 948
HpyAV	CCTTC	2 cut(s)	687, 1009
HpyCH4III	ACNGT	7 cut(s)	54, 315, 398, 498, 759, 800, 914
HpyCH4IV	ACGT	3 cut(s)	384, 943, 1082
HpyCH4V	TGCA	9 cut(s)	96, 177, 293, 540, 621, 737, 823, 1021, 1128
HpySE526I	ACGT	3 cut(s)	384, 943, 1082
Hsp92I	GRCGYC	2 cut(s)	24, 468
Hsp92II	CATG	4 cut(s)	167, 349, 611, 793
Kzo9I	GATC	3 cut(s)	103, 547, 1042
LmnI	GCTCC	4 cut(s)	190, 217, 634, 661
Lsp1109I	GCAGC	2 cut(s)	241, 685
LweI	GCATC	1 cut(s)	1084
MaeII	ACGT	3 cut(s)	384, 943, 1082
MaeIII	GTNAC	2 cut(s)	48, 492
MalI	GATC	3 cut(s)	105, 549, 1044
MbiI	CCGCTC	1 cut(s)	1033
MboI	GATC	3 cut(s)	103, 547, 1042
MboII	GAAGA	6 cut(s)	17, 26, 235, 461, 470, 679
MfeI	CAATTG	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	1007
MluCI	AATT	7 cut(s)	113, 179, 405, 415, 557, 623, 838
MluNI	TGGCCA	1 cut(s)	1007
MnlI	CCTC	4 cut(s)	76, 237, 426, 681
Mox20I	TGGCCA	1 cut(s)	1007
MscI	TGGCCA	1 cut(s)	1007
MseI	TTAA	3 cut(s)	363, 807, 1134
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	1007
MspI	CCGG	3 cut(s)	149, 593, 1073
MspR9I	CCNGG	2 cut(s)	594, 1073
MunI	CAATTG	1 cut(s)	415
Mva1269I	GAATGC	2 cut(s)	265, 709
NciI	CCSGG	2 cut(s)	594, 1073
NdeII	GATC	3 cut(s)	103, 547, 1042
NlaIII	CATG	4 cut(s)	167, 349, 611, 793
NmuCI	GTSAC	2 cut(s)	48, 492
PcsI	WCGNNNNNNNCGW	1 cut(s)	853
PctI	GAATGC	2 cut(s)	265, 709
PfeI	GAWTC	3 cut(s)	121, 426, 565
PkrI	GCNGC	7 cut(s)	23, 256, 337, 467, 700, 781, 986
Ppu21I	YACGTR	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	955
PstI	CTGCAG	2 cut(s)	295, 739
RsaI	GTAC	8 cut(s)	312, 372, 383, 387, 756, 894, 942, 1037
RsaNI	GTAC	8 cut(s)	311, 371, 382, 386, 755, 893, 941, 1036
RseI	CAYNNNNRTG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	945
SaqAI	TTAA	3 cut(s)	363, 807, 1134
SatI	GCNGC	7 cut(s)	22, 255, 336, 466, 699, 780, 985
Sau3AI	GATC	3 cut(s)	103, 547, 1042
Sau96I	GGNCC	1 cut(s)	955
ScaI	AGTACT	2 cut(s)	312, 756
ScrFI	CCNGG	2 cut(s)	594, 1073
SetI	ASST	7 cut(s)	48, 372, 387, 492, 946, 1020, 1085
SfaNI	GCATC	1 cut(s)	1084
SfcI	CTRYAG	2 cut(s)	291, 735
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	1060
SmoI	CTYRAG	1 cut(s)	1060
SnaBI	TACGTA	1 cut(s)	385
Sse9I	AATT	7 cut(s)	113, 179, 405, 415, 557, 623, 838
SsiI	CCGC	9 cut(s)	21, 230, 336, 358, 465, 674, 780, 984, 1033
SspI	AATATT	1 cut(s)	1025
StyD4I	CCNGG	2 cut(s)	592, 1071
TaaI	ACNGT	7 cut(s)	54, 315, 398, 498, 759, 800, 914
TaiI	ACGT	3 cut(s)	387, 946, 1085
TaqI	TCGA	6 cut(s)	102, 126, 546, 570, 897, 946
TasI	AATT	7 cut(s)	113, 179, 405, 415, 557, 623, 838
TatI	WGTACW	3 cut(s)	310, 754, 892
TauI	GCSGC	5 cut(s)	24, 338, 468, 782, 987
TfiI	GAWTC	3 cut(s)	121, 426, 565
Tru1I	TTAA	3 cut(s)	363, 807, 1134
Tru9I	TTAA	3 cut(s)	363, 807, 1134
TscAI	CASTG	4 cut(s)	98, 144, 588, 917
TseFI	GTSAC	2 cut(s)	48, 492
TseI	GCWGC	2 cut(s)	254, 698
Tsp45I	GTSAC	2 cut(s)	48, 492
TspRI	CASTG	4 cut(s)	98, 144, 588, 917
XapI	RAATTY	1 cut(s)	405
XmiI	GTMKAC	3 cut(s)	27, 471, 946
ZrmI	AGTACT	2 cut(s)	312, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.