RchiOBHm_Chr5g0000171

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017537
Physical Location & Seq
Reverse (-)
144255 .. 147103
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28174

Sequence Viewer

Length: 2097 bp
ATGATTCGGAAACAGAGAGAGAGAGGTCGGAAAGGGTCGCCAATCCACATTCGCGGCCATATTCGTTTGTTGGTGAGTTTGATGAAGAGACAGATTTTGTGTAGCCAATCCAAGGCCTTATTATTGTTGTACTTGTACAAGTACAAGTACAACAATGCTGCTGCTCTTCCTAGTGTTGGTATTCGGAAACTTCCATTATCGGCGCAGATGGGCAGCTCTGCCACTCCGGCTGACTCATACATTTCAGAAGGCGAAGACCATATCATCCAAGACAAGGACCTTCTCCGCCGCACAGATTCGGGAACAACAGGGTCCCTCCATGTTCTGGAGGATTTGGTTAATCGTGCTTCTTTGGAAGCTGACCGGACCCTGTGCAATAAGCTGCTTAACAAATGTACCCAGTCTGGCCAACTTAAACAGGCCAGAATTGTCCATGCTCACATCCTTACTTCCACGTTCAACGATGACCTTCCCATCCACAACACCATTCTCAACACGTACGTCAAGTGCGGCAGCTTGGACGACGCCCACAAGCTGTTCGATGAAATGCCTCACAGGGATTTGGTCACCTGGACAGCCTTGATCTCTGGCTATTCTCAACATGATCGACCTGAGGAAGCACTTGTTCTGTTTCCTCAAATGCTTCGCCATGGACTGCAACCCAACCAGTTCACGCTGTCTAGCTTGCTCAAGGCTGCTGGTGCTGGGCCTGACCCTGATGATAAGCACGGCAGGCAGCTTCATGCCCATTGCTTCAAGTGCGGTTTTGATTCCAATGTTTATGTGGGCACTTCTCTCGTGGACATGTATGCTAGGTGTGGCCGTATGGACGAATCCCAGATCATCTTTGACGCTCTCGACACCAAGAATGAGGTGTCTTGGAATGCTTTGATCGCCGGGCATGCTAGGAAGGGTCAAGGAGAGCATGCTCTGAGGTTGTTCTGGAAGATGCTGAGGGGAGGATTCAACCCCACTCATTTCACTTATTCTAGTGTGTTTACTGTTTGTGCCAGTGCAGGGTCTATGGAGCAAGGTAAGTGGGTTCACTCCCATATGATCAAATCGGGTGTTAACCTTGTTGCTTTTGTTGGGAATACTCTTCTCGACATGTATGCCAAGTCAGGCAGCATTGATGATGCTAAAAAGGTATTTGACCGGTTGGTTAGACGAGACATTGTTTCTTTTAATTCGATGCTTACTGGATACTCCCAGCATGGGCTTGGGAAGGAAACTGTGCAGCTGTTTGAACAAATGCTTAGGATTGGAATTCAACCTAATGATATAACATTCCTCTGTCTTCTTACTGCCTGTAGCCATGCTCGCCTCTTGGATGAAGGACAGTATTATTTTCACTTGATGAGGAAAAGGTTCAAAATAGAACCACAGGTTTGGCATTACGTTACAATGGTTGATCTTCTTGGCCGAGCAGGTCTTCTTGATAGAGCTGACAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTCTGGGGAGCCTTGCTAGGCGCTTGTAGGATGCACAACAACATCGACTTGGGTGCCTATGCTGCTGAGCGTGCTTTTGAGCTTGATCCTTATGATTCAGGACCCTATATTATACTCGCTAATATGTACGCATCTGCTGGAAGATTGAATGATGCTGCAAAAGTGAGAAAGATGATGAAAGAGAGTGGGGTGAAAAAGGAACCTGCCTGTAGTTGGGTGGAGATTGAGAATGCAGTCCACATGTTTGTGGCAAACGATGATGCACACCCGCAAAGAGCAGAGATATATAGGATGTGGGAGATGATTAGCAAGAAGATAAAGGAGGTCGGATACGTTCCAGACACTAGCCATGTACTCTTCTTTGTGGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTTTCACAGTGAGAAGCTTGCACTCGCATTTGCGCTTCTTAACACTTCTCCTGGATCCACCATCCGGATCAAGAAGAACATTAGGGTTTGTGGTGATTGTCATTCGGCAATCAAGTATGTCTCAAAGATGGAAAGGCGAGAAATCATTGTGAGAGACACCAATCGGTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG

Protein Analysis

698

Amino Acids

78.94

Weight (kDa)

8.86

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 187 - 232 5.2e-12 PPR repeat family
PPR PF01535 189 - 219 8.5e-08 PPR repeat
PPR_2 PF13041 290 - 337 1.5e-12 PPR repeat family
PPR PF01535 292 - 322 1.3e-06 PPR repeat
PPR_2 PF13041 390 - 438 1e-11 PPR repeat family
PPR PF01535 393 - 423 2.8e-06 PPR repeat
E_motif PF20431 508 - 570 8.3e-21 E motif
DYW_deaminase PF14432 606 - 698 2.2e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24000
fragaria_vesca FvH4_3g00130
malus_domestica MD05G1044700.v1.1
prunus_persica Prupe.4G001500_v2.0.a1
pyrus_communis pycom05g03730
rosa_chinensis RchiOBHm_Chr5g0000171
rosa_laevigata RLG00000030847
rosa_multiflora Rmu_ssc0000243.1_g000013
rosa_roxburghii Rroxscaffold_1G00075920
rosa_rugosa Rorug04G0382100
rosa_samantha Rh5CG001500
rosa_wichuraiana Rw5G000160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1418, 1699
AccB1I GGYRCC 1 cut(s) 1541
AccB7I CCANNNNNTGG 1 cut(s) 325
AccII CGCG 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 1947
AciI CCGC 6 cut(s) 54, 286, 289, 510, 762, 1757
AclWI GGATC 4 cut(s) 1568, 1932, 1945, 1958
AcoI YGGCCR 4 cut(s) 55, 406, 820, 1420
AcsI RAATTY 1 cut(s) 1266
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 8 cut(s) 131, 137, 143, 149, 397, 500, 1616, 1842
AfiI CCNNNNNNNGG 8 cut(s) 112, 176, 274, 325, 1017, 1215, 1701, 1947
AflIII ACRYGT 4 cut(s) 495, 804, 1107, 1728
AgeI ACCGGT 1 cut(s) 1155
AgsI TTSAA 8 cut(s) 460, 757, 967, 1247, 1271, 1372, 1475, 1636
AjnI CCWGG 2 cut(s) 569, 1933
Alw26I GTCTC 4 cut(s) 82, 1164, 2008, 2031
AlwI GGATC 4 cut(s) 1568, 1932, 1945, 1958
Aor13HI TCCGGA 1 cut(s) 1947
AoxI GGCC 7 cut(s) 55, 114, 406, 420, 707, 820, 1420
ApoI RAATTY 1 cut(s) 1266
AsiGI ACCGGT 1 cut(s) 1155
Asp700I GAANNNNTTC 1 cut(s) 1367
AspLEI GCGC 3 cut(s) 205, 1511, 1918
AspS9I GGNCC 6 cut(s) 277, 312, 366, 707, 1589, 1855
AsuC2I CCSGG 1 cut(s) 898
AsuHPI GGTGA 4 cut(s) 85, 559, 1690, 1988
AvaII GGWCC 5 cut(s) 277, 312, 366, 1589, 1855
AxyI CCTNAGG 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BalI TGGCCA 1 cut(s) 408
BamHI GGATCC 1 cut(s) 1937
BanI GGYRCC 1 cut(s) 1541
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 3 cut(s) 261, 1289, 1424
BbvCI CCTCAGC 1 cut(s) 953
BccI CCATC 6 cut(s) 202, 482, 1952, 2005, 2060, 2061
BceAI ACGGC 2 cut(s) 745, 807
BcgI CGANNNNNNTGC 6 cut(s) 778, 812, 1094, 1128, 1523, 1557
BciT130I CCWGG 2 cut(s) 571, 1935
BciVI GTATCC 2 cut(s) 1196, 1811
BclI TGATCA 1 cut(s) 1056
BcnI CCSGG 1 cut(s) 898
BcoDI GTCTC 4 cut(s) 82, 1164, 2008, 2031
BfaI CTAG 7 cut(s) 171, 681, 813, 906, 990, 1505, 1833
BfmI CTRYAG 3 cut(s) 1309, 1482, 1696
BfoI RGCGCY 1 cut(s) 1512
BfuAI ACCTGC 2 cut(s) 1418, 1699
BfuI GTATCC 2 cut(s) 1196, 1811
BglI GCCNNNNNGGC 1 cut(s) 227
BlpI GCTNAGC 1 cut(s) 1554
Bme1390I CCNGG 3 cut(s) 571, 898, 1935
Bme18I GGWCC 5 cut(s) 277, 312, 366, 1589, 1855
BmgT120I GGNCC 6 cut(s) 277, 312, 366, 707, 1589, 1855
BmiI GGNNCC 9 cut(s) 313, 314, 368, 1498, 1543, 1591, 1689, 1939, 2051
BmrFI CCNGG 3 cut(s) 571, 898, 1935
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 7 cut(s) 939, 1126, 1182, 1509, 1628, 1630, 1738
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 3 cut(s) 261, 1289, 1424
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 2 cut(s) 953, 1256
Bpu1102I GCTNAGC 1 cut(s) 1554
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 898
BsaAI YACGTR 1 cut(s) 498
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 111, 649
BsaWI WCCGGW 3 cut(s) 363, 1155, 1947
Bsc4I CCNNNNNNNGG 8 cut(s) 112, 176, 274, 325, 1017, 1215, 1701, 1947
Bse118I RCCGGY 1 cut(s) 1155
Bse1I ACTGG 4 cut(s) 400, 667, 1011, 1204
Bse21I CCTNAGG 1 cut(s) 612
Bse3DI GCAATG 1 cut(s) 748
BseAI TCCGGA 1 cut(s) 1947
BseBI CCWGG 2 cut(s) 571, 1935
BseDI CCNNGG 2 cut(s) 111, 649
BseGI GGATG 7 cut(s) 264, 441, 474, 1336, 1524, 1785, 1944
BseLI CCNNNNNNNGG 8 cut(s) 112, 176, 274, 325, 1017, 1215, 1701, 1947
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 4 cut(s) 603, 923, 944, 1545
BseNI ACTGG 4 cut(s) 400, 667, 1011, 1204
BseSI GKGCMC 1 cut(s) 791
BseYI CCCAGC 2 cut(s) 704, 1209
BsgI GTGCAG 2 cut(s) 1035, 1256
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 7 cut(s) 57, 116, 408, 422, 709, 822, 1422
BshNI GGYRCC 1 cut(s) 1541
BshTI ACCGGT 1 cut(s) 1155
BsiSI CCGG 5 cut(s) 227, 364, 897, 1156, 1948
BsiWI CGTACG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 8 cut(s) 112, 176, 274, 325, 1017, 1215, 1701, 1947
BsmAI GTCTC 4 cut(s) 82, 1164, 2008, 2031
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 2 cut(s) 889, 1723
BsnI GGCC 7 cut(s) 57, 116, 408, 422, 709, 822, 1422
Bsp1286I GDGCHC 1 cut(s) 791
Bsp13I TCCGGA 1 cut(s) 1947
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
Bsp1720I GCTNAGC 1 cut(s) 1554
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 6 cut(s) 54, 286, 289, 510, 762, 1757
BspANI GGCC 7 cut(s) 57, 116, 408, 422, 709, 822, 1422
BspCNI CTCAG 4 cut(s) 604, 924, 945, 1546
BspEI TCCGGA 1 cut(s) 1947
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 9 cut(s) 313, 314, 368, 1498, 1543, 1591, 1689, 1939, 2051
BspMAI CTGCAG 1 cut(s) 1486
BspMI ACCTGC 2 cut(s) 1418, 1699
BspPI GGATC 4 cut(s) 1568, 1932, 1945, 1958
BspQI GCTCTTC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 1541
BsrDI GCAATG 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 1155
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 4 cut(s) 400, 667, 1011, 1204
BssAI RCCGGY 1 cut(s) 1155
BssECI CCNNGG 2 cut(s) 111, 649
BssMI GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 2 cut(s) 111, 649
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 2 cut(s) 571, 1935
Bst4CI ACNGT 4 cut(s) 1003, 1234, 1341, 1892
Bst6I CTCTTC 4 cut(s) 80, 171, 1104, 1850
BstACI GRCGYC 1 cut(s) 525
BstAUI TGTACA 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 498
BstC8I GCNNGC 7 cut(s) 686, 734, 903, 927, 1321, 1560, 1902
BstDEI CTNAG 5 cut(s) 612, 932, 953, 1256, 1554
BstDSI CCRYGG 1 cut(s) 649
BstEII GGTNACC 1 cut(s) 565
BstF5I GGATG 7 cut(s) 264, 441, 474, 1336, 1524, 1785, 1944
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 1512
BstHHI GCGC 3 cut(s) 205, 1511, 1918
BstKTI GATC 9 cut(s) 585, 607, 843, 894, 1059, 1414, 1576, 1940, 1953
BstMAI GTCTC 4 cut(s) 82, 1164, 2008, 2031
BstMBI GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
BstMWI GCNNNNNNNGC 9 cut(s) 227, 701, 733, 759, 893, 902, 1320, 1550, 1559
BstNI CCWGG 2 cut(s) 571, 1935
BstNSI RCATGY 5 cut(s) 808, 905, 929, 1111, 1732
BstPI GGTNACC 1 cut(s) 565
BstSCI CCNGG 3 cut(s) 569, 896, 1933
BstSFI CTRYAG 3 cut(s) 1309, 1482, 1696
BstSLI GKGCMC 1 cut(s) 791
BstUI CGCG 1 cut(s) 54
BstV2I GAAGAC 3 cut(s) 261, 1289, 1424
BstX2I RGATCY 1 cut(s) 1937
BstXI CCANNNNNNTGG 1 cut(s) 1389
BstYI RGATCY 1 cut(s) 1937
Bsu36I CCTNAGG 1 cut(s) 612
BsuI GTATCC 2 cut(s) 1196, 1811
BsuRI GGCC 7 cut(s) 57, 116, 408, 422, 709, 822, 1422
BtgI CCRYGG 1 cut(s) 649
BtsCI GGATG 7 cut(s) 264, 441, 474, 1336, 1524, 1785, 1944
BtsI GCAGTG 1 cut(s) 1479
BtsIMutI CAGTG 3 cut(s) 1018, 1479, 1897
BveI ACCTGC 2 cut(s) 1418, 1699
Cac8I GCNNGC 7 cut(s) 686, 734, 903, 927, 1321, 1560, 1902
CfoI GCGC 3 cut(s) 205, 1511, 1918
Cfr10I RCCGGY 1 cut(s) 1155
Cfr13I GGNCC 6 cut(s) 277, 312, 366, 707, 1589, 1855
CseI GACGC 2 cut(s) 533, 860
Csp6I GTAC 8 cut(s) 130, 136, 142, 148, 396, 499, 1615, 1841
CspAI ACCGGT 1 cut(s) 1155
CspCI CAANNNNNGTGG 2 cut(s) 1019, 1054
CviQI GTAC 8 cut(s) 130, 136, 142, 148, 396, 499, 1615, 1841
DdeI CTNAG 5 cut(s) 612, 932, 953, 1256, 1554
DpnI GATC 9 cut(s) 584, 606, 842, 893, 1058, 1413, 1575, 1939, 1952
DpnII GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
EaeI YGGCCR 4 cut(s) 55, 406, 820, 1420
Eam1104I CTCTTC 4 cut(s) 80, 171, 1104, 1850
EarI CTCTTC 4 cut(s) 80, 171, 1104, 1850
EciI GGCGGA 1 cut(s) 275
Eco130I CCWWGG 2 cut(s) 111, 649
Eco147I AGGCCT 1 cut(s) 116
Eco47I GGWCC 5 cut(s) 277, 312, 366, 1589, 1855
Eco81I CCTNAGG 1 cut(s) 612
Eco91I GGTNACC 1 cut(s) 565
EcoO109I RGGNCCY 3 cut(s) 277, 312, 1589
EcoO65I GGTNACC 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 1266
EcoRII CCWGG 2 cut(s) 569, 1933
EcoT14I CCWWGG 2 cut(s) 111, 649
ErhI CCWWGG 2 cut(s) 111, 649
FaqI GGGAC 1 cut(s) 298
FauI CCCGC 1 cut(s) 1764
FauNDI CATATG 1 cut(s) 1053
FbaI TGATCA 1 cut(s) 1056
FokI GGATG 7 cut(s) 251, 428, 461, 1343, 1531, 1792, 1931
FspBI CTAG 7 cut(s) 171, 681, 813, 906, 990, 1505, 1833
GlaI GCGC 3 cut(s) 204, 1510, 1917
GsaI CCCAGC 2 cut(s) 708, 1213
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 1512
HaeIII GGCC 7 cut(s) 57, 116, 408, 422, 709, 822, 1422
HapII CCGG 5 cut(s) 227, 364, 897, 1156, 1948
HgaI GACGC 2 cut(s) 533, 860
HhaI GCGC 3 cut(s) 205, 1511, 1918
Hin1I GRCGYC 1 cut(s) 525
Hin6I GCGC 3 cut(s) 203, 1509, 1916
HinP1I GCGC 3 cut(s) 203, 1509, 1916
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HindIII AAGCTT 1 cut(s) 1898
HinfI GANTC 7 cut(s) 4, 233, 296, 770, 833, 963, 1583
HpaI GTTAAC 1 cut(s) 1072
HpaII CCGG 5 cut(s) 227, 364, 897, 1156, 1948
HphI GGTGA 4 cut(s) 85, 559, 1690, 1988
Hpy166II GTNNAC 7 cut(s) 672, 802, 999, 1045, 1072, 1726, 1855
Hpy188I TCNGA 6 cut(s) 9, 30, 186, 247, 933, 1817
Hpy8I GTNNAC 7 cut(s) 672, 802, 999, 1045, 1072, 1726, 1855
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 6 cut(s) 242, 290, 479, 904, 1219, 1328
HpyCH4III ACNGT 4 cut(s) 1003, 1234, 1341, 1892
HpyCH4IV ACGT 5 cut(s) 455, 497, 501, 1398, 1821
HpyF10VI GCNNNNNNNGC 9 cut(s) 227, 701, 733, 759, 893, 902, 1320, 1550, 1559
HpyF3I CTNAG 5 cut(s) 612, 932, 953, 1256, 1554
HpySE526I ACGT 5 cut(s) 455, 497, 501, 1398, 1821
Hsp92I GRCGYC 1 cut(s) 525
HspAI GCGC 3 cut(s) 203, 1509, 1916
KflI GGGWCCC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 1947
Ksp22I TGATCA 1 cut(s) 1056
KspAI GTTAAC 1 cut(s) 1072
Kzo9I GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 1027, 1496
LweI GCATC 7 cut(s) 939, 1126, 1182, 1509, 1628, 1630, 1738
MaeI CTAG 7 cut(s) 171, 681, 813, 906, 990, 1505, 1833
MaeII ACGT 5 cut(s) 455, 497, 501, 1398, 1821
MaeIII GTNAC 2 cut(s) 565, 1399
MalI GATC 9 cut(s) 584, 606, 842, 893, 1058, 1413, 1575, 1939, 1952
MboI GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
MflI RGATCY 1 cut(s) 1937
MhlI GDGCHC 1 cut(s) 791
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 3 cut(s) 426, 1186, 1266
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 8, 1795
Mox20I TGGCCA 1 cut(s) 408
MroI TCCGGA 1 cut(s) 1947
MroXI GAANNNNTTC 1 cut(s) 1367
MscI TGGCCA 1 cut(s) 408
MseI TTAA 6 cut(s) 339, 387, 414, 1071, 1185, 1923
MslI CAYNNNNRTG 2 cut(s) 1733, 2061
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 1240, 1487
MspI CCGG 5 cut(s) 227, 364, 897, 1156, 1948
MspR9I CCNGG 3 cut(s) 571, 898, 1935
Mva1269I GAATGC 2 cut(s) 889, 1723
MvaI CCWGG 2 cut(s) 571, 1935
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 9 cut(s) 227, 701, 733, 759, 893, 902, 1320, 1550, 1559
NciI CCSGG 1 cut(s) 898
NcoI CCATGG 1 cut(s) 649
NdeI CATATG 1 cut(s) 1053
NdeII GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
NlaIV GGNNCC 9 cut(s) 313, 314, 368, 1498, 1543, 1591, 1689, 1939, 2051
NmeAIII GCCGAG 1 cut(s) 1448
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 5 cut(s) 808, 905, 929, 1111, 1732
PaeI GCATGC 2 cut(s) 905, 929
PceI AGGCCT 1 cut(s) 116
PciI ACATGT 3 cut(s) 804, 1107, 1728
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 2 cut(s) 889, 1723
PdmI GAANNNNTTC 1 cut(s) 1367
PfeI GAWTC 6 cut(s) 4, 296, 770, 833, 963, 1583
Pfl23II CGTACG 1 cut(s) 498
PflMI CCANNNNNTGG 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 1933
PinAI ACCGGT 1 cut(s) 1155
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Ppu21I YACGTR 1 cut(s) 498
PpuMI RGGWCCY 3 cut(s) 277, 312, 1589
PscI ACATGT 3 cut(s) 804, 1107, 1728
Psp5II RGGWCCY 3 cut(s) 277, 312, 1589
Psp6I CCWGG 2 cut(s) 569, 1933
PspEI GGTNACC 1 cut(s) 565
PspFI CCCAGC 2 cut(s) 704, 1209
PspGI CCWGG 2 cut(s) 569, 1933
PspLI CGTACG 1 cut(s) 498
PspN4I GGNNCC 9 cut(s) 313, 314, 368, 1498, 1543, 1591, 1689, 1939, 2051
PspPI GGNCC 6 cut(s) 277, 312, 366, 707, 1589, 1855
PspPPI RGGWCCY 3 cut(s) 277, 312, 1589
PstI CTGCAG 1 cut(s) 1486
PsuI RGATCY 1 cut(s) 1937
PvuII CAGCTG 2 cut(s) 1240, 1487
RsaI GTAC 8 cut(s) 131, 137, 143, 149, 397, 500, 1616, 1842
RsaNI GTAC 8 cut(s) 130, 136, 142, 148, 396, 499, 1615, 1841
RseI CAYNNNNRTG 2 cut(s) 1733, 2061
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 6 cut(s) 339, 387, 414, 1071, 1185, 1923
Sau3AI GATC 9 cut(s) 582, 604, 840, 891, 1056, 1411, 1573, 1937, 1950
Sau96I GGNCC 6 cut(s) 277, 312, 366, 707, 1589, 1855
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 571, 898, 1935
SduI GDGCHC 1 cut(s) 791
SfaNI GCATC 7 cut(s) 939, 1126, 1182, 1509, 1628, 1630, 1738
SfcI CTRYAG 3 cut(s) 1309, 1482, 1696
SinI GGWCC 5 cut(s) 277, 312, 366, 1589, 1855
SmiMI CAYNNNNRTG 2 cut(s) 1733, 2061
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SphI GCATGC 2 cut(s) 905, 929
Sse9I AATT 3 cut(s) 426, 1186, 1266
SseBI AGGCCT 1 cut(s) 116
SsiI CCGC 6 cut(s) 54, 286, 289, 510, 762, 1757
SspMI CTAG 7 cut(s) 171, 681, 813, 906, 990, 1505, 1833
StuI AGGCCT 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 569, 896, 1933
StyI CCWWGG 2 cut(s) 111, 649
TaaI ACNGT 4 cut(s) 1003, 1234, 1341, 1892
TaiI ACGT 5 cut(s) 458, 500, 504, 1401, 1824
TaqI TCGA 6 cut(s) 540, 607, 858, 1104, 1190, 1533
TasI AATT 3 cut(s) 426, 1186, 1266
TatI WGTACW 5 cut(s) 129, 135, 141, 147, 1840
TauI GCSGC 3 cut(s) 57, 291, 513
TfiI GAWTC 6 cut(s) 4, 296, 770, 833, 963, 1583
Tru1I TTAA 6 cut(s) 339, 387, 414, 1071, 1185, 1923
Tru9I TTAA 6 cut(s) 339, 387, 414, 1071, 1185, 1923
TscAI CASTG 3 cut(s) 1018, 1486, 1897
TseFI GTSAC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 6 cut(s) 98, 558, 731, 1347, 1444, 1679
TspGWI ACGGA 1 cut(s) 2051
TspRI CASTG 3 cut(s) 1018, 1486, 1897
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 5 cut(s) 277, 312, 366, 1589, 1855
XapI RAATTY 1 cut(s) 1266
XceI RCATGY 5 cut(s) 808, 905, 929, 1111, 1732
XcmI CCANNNNNNNNNTGG 2 cut(s) 781, 1217
XmnI GAANNNNTTC 1 cut(s) 1367
XspI CTAG 7 cut(s) 171, 681, 813, 906, 990, 1505, 1833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.