Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017537

Physical Location & Seq

Genomic Coordinates Reverse (-)

184940 .. 186952

Gene Structure 2013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGAAGAGACAGATTTTGTGTAGTCAATCCAAGGCCTTATTTTTATTGTTGTACAACAATGCTGCTGCTCTTCGGAAACTTCCATTATCGGCGCAGATGGGCAGCTCTGCCACTCCGGCTGACTTGACTACTGACCCCTCAGACATTTCAGAAGGCGAAGACTGGTACGCCTCCCATATCATCCAAGACGAGGACCTTCTCCGCAAGAGCCTCACAGATTCGGGAACAACAGGGCTCCATGTTCTGGACTTGGTTAATCGCGCTTCTTTGGAAGCTGACCGCACCCTGTACATTAAGCTGCTTAACAAATGTACCCAGACTGGCCAACTTAAACAGGCCAGAATTGTCCGTGCTCACATCCTTACTTCCAAGTTCAACGATGACCTTCCCATCCACAACACCATTCTCAACACGTATGTCAAGTGCGGCAGCTTGGACGACGCCCACAAGCTGTTCGATGAAATGCCTCACAGGGATTTGGTCACCTGGACGGCCTTGATCTCTGGCTATTCTCAACATGATCGACCTGAGGAAGCACTTGTTCTGTTTGTTCAAATGCTTCGCCATGGACTGCAACCCAACCAGTTCACGCTGTCTAGCTTGCTCAAGGCTGCTGGTGCTGGGCCTCACCCTGATGATAAGCACGGCAGGCAGCTTCATGCCCATTGCTTCAAGTGCGGTTTTGATTCCAATGTTTATGTGGGCACTTCTCTCGTGGACATGTATGCTAGGTGTGGCCGTATGGACGAATCCCAGATCGTCTTTGACGCTCTCGACACCAAGAATGAGGTGTCTTGGAATGCTTTGATCGCCGGGCATGCTAGGAAGGGTCAAGGAGAGCATGCTCTGAGGTTGTTCTGGAAGATGCTGAGGGGAGGCTTCAAGCCCACTCATTTCACTTATTCTAGTGTGTTTACTGTTTGTGCCAGTGCAGGGTCTATGGAGCAAGGTAAGTGGGTTCACTCCCATATGATTAAATCGGGTGTCAACCTTGTTGCTTTTGTTGGGAATACTCTTCTCGACATGTACGCCAAGTCAGGCAGCATTGATGATGCTAAAAAGGTTTTTGACCGGTTGGTTAGACGAGACATTGTTTCTTGGAATTCGATGCTTACTGGATACTCCCAGCATGGGCTTGGGAAGGAAACTGTGCAGCTGTTTGAAGAAATGCTTAGGATTGGAATTCAACCTAATGATATAACATTCCTCTGTGTTCTTACTGCCTGTAGCCATGCTCGCCTCTTGGATGAAGGACAGTATTATTTTCACTTGATGAGGAAAAGGTTCAAAATAGAACCACAGGTTTGGCATTACGTTACAATGGTTGATCTTCTTGGCCGAGCAGGTCTTCTTGACAGAGCTGACAACTTCATTAGAGAAATGCCAATTGAACCCACTGCAGCTGTCTGGGGAGCCTTGCTAGGTGCTTGTAGGATGCACAACAACATCGACTTGGGTGCCTATGCTGCTGAGCATGCTTTTGAGCTTGATCCTTATGACTCAGGACCCTATATTATACTCGCTAATATGTATGCATCTGCTGGACGATTGAATGATGCTGCAAAAGTAAGAAAGATGATGAAAGAGAGTGGGGTGAAAAAAGAACCTGCCTGTAGTTGGGTGGAGATTGAGAATGCAGTCCACATGTTTGTGGCAAACGATGATGCCCACCCGCAAAGAGCAGAGATATATAGGATGTGGGAGGTGATTAGCAAGAAGATAAAGGAGATCGGATATGTTCCAGACACTAGCCATGTACTCTTCTTTGTGGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTTTCACAGTGAGAAGCTTGCACTCGCATTTGCGCTTCTTAACACTTCTCCTGGATCCACCATCCGGATTAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCGGCAATCAAGTACGTCTCAAAGGTGGAAAGGCGAGAAATCATTGTGAGAGACACCAATCGGTTCCATCATTTCCGTGATGGCTCTTTTTCTTGTGGGGACTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

671

Amino Acids

75.66

Weight (kDa)

7.64

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	159 - 204	2.5e-12	PPR repeat family
PPR	PF01535	161 - 191	2.3e-08	PPR repeat
PPR_2	PF13041	262 - 309	5.1e-13	PPR repeat family
PPR	PF01535	264 - 294	1.2e-06	PPR repeat
PPR_2	PF13041	362 - 410	3.9e-12	PPR repeat family
PPR	PF01535	365 - 395	1.4e-07	PPR repeat
E_motif	PF20431	480 - 542	2e-20	E motif
DYW_deaminase	PF14432	578 - 670	1e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24000
fragaria_vesca	FvH4_3g00130
malus_domestica	MD05G1044700.v1.1
prunus_persica	Prupe.4G001500_v2.0.a1
pyrus_communis	pycom05g03730
rosa_chinensis	RchiOBHm_Chr5g0000171
rosa_laevigata	RLG00000030847
rosa_multiflora	Rmu_ssc0000243.1_g000013
rosa_roxburghii	Rroxscaffold_1G00075920
rosa_rugosa	Rorug04G0382100
rosa_samantha	Rh5CG001500
rosa_wichuraiana	Rw5G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1334, 1615
AccB1I	GGYRCC	1 cut(s)	1457
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccII	CGCG	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	1863
AciI	CCGC	5 cut(s)	202, 280, 426, 678, 1673
AclWI	GGATC	3 cut(s)	1484, 1848, 1861
AcoI	YGGCCR	3 cut(s)	322, 736, 1336
AcsI	RAATTY	2 cut(s)	1102, 1182
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	7 cut(s)	53, 167, 290, 313, 1028, 1758, 1916
AfiI	CCNNNNNNNGG	6 cut(s)	190, 244, 933, 1131, 1617, 1863
AflIII	ACRYGT	4 cut(s)	411, 720, 1023, 1644
AgeI	ACCGGT	1 cut(s)	1071
AgsI	TTSAA	9 cut(s)	376, 554, 673, 883, 1163, 1187, 1288, 1391, 1552
AjnI	CCWGG	2 cut(s)	485, 1849
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	3 cut(s)	1080, 1924, 1947
AlwI	GGATC	3 cut(s)	1484, 1848, 1861
Aor13HI	TCCGGA	1 cut(s)	1863
AoxI	GGCC	7 cut(s)	33, 322, 336, 492, 623, 736, 1336
ApoI	RAATTY	2 cut(s)	1102, 1182
AsiGI	ACCGGT	1 cut(s)	1071
Asp700I	GAANNNNTTC	1 cut(s)	1283
AspLEI	GCGC	3 cut(s)	94, 263, 1834
AspS9I	GGNCC	4 cut(s)	193, 623, 1505, 1771
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	5 cut(s)	475, 620, 1606, 1717, 1904
AvaII	GGWCC	3 cut(s)	193, 1505, 1771
AxyI	CCTNAGG	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	707
BaeI	ACNNNNGTAYC	2 cut(s)	295, 328
BalI	TGGCCA	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	1853
BanI	GGYRCC	1 cut(s)	1457
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	713
BbsI	GAAGAC	2 cut(s)	165, 1340
Bbv12I	GWGCWC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	869
BccI	CCATC	5 cut(s)	91, 398, 1868, 1976, 1977
BceAI	ACGGC	3 cut(s)	507, 661, 723
BcgI	CGANNNNNNTGC	4 cut(s)	694, 728, 1439, 1473
BciT130I	CCWGG	2 cut(s)	487, 1851
BciVI	GTATCC	1 cut(s)	1112
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	3 cut(s)	1080, 1924, 1947
BfaI	CTAG	6 cut(s)	597, 729, 822, 906, 1421, 1749
BfmI	CTRYAG	3 cut(s)	1225, 1398, 1612
BfuAI	ACCTGC	2 cut(s)	1334, 1615
BfuI	GTATCC	1 cut(s)	1112
BglI	GCCNNNNNGGC	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	1470
Bme1390I	CCNGG	3 cut(s)	487, 814, 1851
Bme18I	GGWCC	3 cut(s)	193, 1505, 1771
BmgT120I	GGNCC	4 cut(s)	193, 623, 1505, 1771
BmiI	GGNNCC	6 cut(s)	236, 1414, 1459, 1507, 1855, 1967
BmrFI	CCNGG	3 cut(s)	487, 814, 1851
BmsI	GCATC	7 cut(s)	855, 1042, 1098, 1425, 1544, 1546, 1654
BpiI	GAAGAC	2 cut(s)	165, 1340
Bpu10I	CCTNAGC	2 cut(s)	869, 1172
Bpu1102I	GCTNAGC	1 cut(s)	1470
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	814
BsaAI	YACGTR	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	30, 565
BsaWI	WCCGGW	2 cut(s)	1071, 1863
Bsc4I	CCNNNNNNNGG	6 cut(s)	190, 244, 933, 1131, 1617, 1863
Bse118I	RCCGGY	1 cut(s)	1071
Bse1I	ACTGG	5 cut(s)	167, 325, 583, 927, 1120
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	664
BseAI	TCCGGA	1 cut(s)	1863
BseBI	CCWGG	2 cut(s)	487, 1851
BseDI	CCNNGG	2 cut(s)	30, 565
BseGI	GGATG	7 cut(s)	180, 357, 390, 1252, 1440, 1701, 1860
BseLI	CCNNNNNNNGG	6 cut(s)	190, 244, 933, 1131, 1617, 1863
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	6 cut(s)	153, 519, 839, 860, 1461, 1515
BseNI	ACTGG	5 cut(s)	167, 325, 583, 927, 1120
BseSI	GKGCMC	1 cut(s)	707
BseYI	CCCAGC	2 cut(s)	620, 1125
BsgI	GTGCAG	2 cut(s)	951, 1172
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	7 cut(s)	35, 324, 338, 494, 625, 738, 1338
BshNI	GGYRCC	1 cut(s)	1457
BshTI	ACCGGT	1 cut(s)	1071
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	4 cut(s)	116, 813, 1072, 1864
BslI	CCNNNNNNNGG	6 cut(s)	190, 244, 933, 1131, 1617, 1863
BsmAI	GTCTC	3 cut(s)	1080, 1924, 1947
BsmBI	CGTCTC	1 cut(s)	1924
BsmI	GAATGC	2 cut(s)	805, 1639
BsnI	GGCC	7 cut(s)	35, 324, 338, 494, 625, 738, 1338
Bsp1286I	GDGCHC	3 cut(s)	237, 355, 707
Bsp13I	TCCGGA	1 cut(s)	1863
Bsp1407I	TGTACA	2 cut(s)	51, 288
Bsp143I	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
Bsp1720I	GCTNAGC	1 cut(s)	1470
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	5 cut(s)	202, 280, 426, 678, 1673
BspANI	GGCC	7 cut(s)	35, 324, 338, 494, 625, 738, 1338
BspCNI	CTCAG	6 cut(s)	152, 520, 840, 861, 1462, 1514
BspEI	TCCGGA	1 cut(s)	1863
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	6 cut(s)	236, 1414, 1459, 1507, 1855, 1967
BspMAI	CTGCAG	1 cut(s)	1402
BspMI	ACCTGC	2 cut(s)	1334, 1615
BspPI	GGATC	3 cut(s)	1484, 1848, 1861
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	1457
BsrDI	GCAATG	1 cut(s)	664
BsrFI	RCCGGY	1 cut(s)	1071
BsrGI	TGTACA	2 cut(s)	51, 288
BsrI	ACTGG	5 cut(s)	167, 325, 583, 927, 1120
BssAI	RCCGGY	1 cut(s)	1071
BssECI	CCNNGG	2 cut(s)	30, 565
BssMI	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	713
BssT1I	CCWWGG	2 cut(s)	30, 565
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	487, 1851
Bst4CI	ACNGT	4 cut(s)	919, 1150, 1257, 1808
Bst6I	CTCTTC	3 cut(s)	75, 1020, 1766
BstACI	GRCGYC	1 cut(s)	441
BstAUI	TGTACA	2 cut(s)	51, 288
BstBAI	YACGTR	1 cut(s)	414
BstC8I	GCNNGC	7 cut(s)	602, 650, 819, 843, 1237, 1476, 1818
BstDEI	CTNAG	7 cut(s)	139, 528, 848, 869, 1172, 1470, 1501
BstDSI	CCRYGG	1 cut(s)	565
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	7 cut(s)	180, 357, 390, 1252, 1440, 1701, 1860
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	3 cut(s)	94, 263, 1834
BstKTI	GATC	8 cut(s)	501, 523, 759, 810, 1330, 1492, 1731, 1856
BstMAI	GTCTC	3 cut(s)	1080, 1924, 1947
BstMBI	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 617, 649, 675, 809, 818, 1236, 1466, 1475
BstNI	CCWGG	2 cut(s)	487, 1851
BstNSI	RCATGY	6 cut(s)	724, 821, 845, 1027, 1478, 1648
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	3 cut(s)	485, 812, 1849
BstSFI	CTRYAG	3 cut(s)	1225, 1398, 1612
BstSLI	GKGCMC	1 cut(s)	707
BstUI	CGCG	1 cut(s)	261
BstV2I	GAAGAC	2 cut(s)	165, 1340
BstX2I	RGATCY	1 cut(s)	1853
BstXI	CCANNNNNNTGG	1 cut(s)	1305
BstYI	RGATCY	1 cut(s)	1853
Bsu36I	CCTNAGG	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	1112
BsuRI	GGCC	7 cut(s)	35, 324, 338, 494, 625, 738, 1338
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	7 cut(s)	180, 357, 390, 1252, 1440, 1701, 1860
BtsI	GCAGTG	1 cut(s)	1395
BtsIMutI	CAGTG	3 cut(s)	934, 1395, 1813
BveI	ACCTGC	2 cut(s)	1334, 1615
Cac8I	GCNNGC	7 cut(s)	602, 650, 819, 843, 1237, 1476, 1818
CfoI	GCGC	3 cut(s)	94, 263, 1834
Cfr10I	RCCGGY	1 cut(s)	1071
Cfr13I	GGNCC	4 cut(s)	193, 623, 1505, 1771
CseI	GACGC	2 cut(s)	449, 776
Csp6I	GTAC	7 cut(s)	52, 166, 289, 312, 1027, 1757, 1915
CspAI	ACCGGT	1 cut(s)	1071
CspCI	CAANNNNNGTGG	2 cut(s)	935, 970
CviQI	GTAC	7 cut(s)	52, 166, 289, 312, 1027, 1757, 1915
DdeI	CTNAG	7 cut(s)	139, 528, 848, 869, 1172, 1470, 1501
DpnI	GATC	8 cut(s)	500, 522, 758, 809, 1329, 1491, 1730, 1855
DpnII	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
EaeI	YGGCCR	3 cut(s)	322, 736, 1336
Eam1104I	CTCTTC	3 cut(s)	75, 1020, 1766
EarI	CTCTTC	3 cut(s)	75, 1020, 1766
Eco130I	CCWWGG	2 cut(s)	30, 565
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	3 cut(s)	193, 1505, 1771
Eco81I	CCTNAGG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	481
EcoO109I	RGGNCCY	2 cut(s)	193, 1505
EcoO65I	GGTNACC	1 cut(s)	481
EcoRI	GAATTC	2 cut(s)	1102, 1182
EcoRII	CCWGG	2 cut(s)	485, 1849
EcoT14I	CCWWGG	2 cut(s)	30, 565
EcoT22I	ATGCAT	1 cut(s)	1537
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	30, 565
Esp3I	CGTCTC	1 cut(s)	1924
FalI	AAGNNNNNCTT	2 cut(s)	1155, 1187
FauI	CCCGC	1 cut(s)	1680
FauNDI	CATATG	1 cut(s)	969
FokI	GGATG	7 cut(s)	167, 344, 377, 1259, 1447, 1708, 1847
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	6 cut(s)	597, 729, 822, 906, 1421, 1749
GlaI	GCGC	3 cut(s)	93, 262, 1833
GsaI	CCCAGC	2 cut(s)	624, 1129
HaeIII	GGCC	7 cut(s)	35, 324, 338, 494, 625, 738, 1338
HapII	CCGG	4 cut(s)	116, 813, 1072, 1864
HgaI	GACGC	2 cut(s)	449, 776
HhaI	GCGC	3 cut(s)	94, 263, 1834
Hin1I	GRCGYC	1 cut(s)	441
Hin6I	GCGC	3 cut(s)	92, 261, 1832
HinP1I	GCGC	3 cut(s)	92, 261, 1832
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	1814
HinfI	GANTC	4 cut(s)	218, 686, 749, 1499
HpaII	CCGG	4 cut(s)	116, 813, 1072, 1864
HphI	GGTGA	5 cut(s)	475, 620, 1606, 1717, 1904
Hpy166II	GTNNAC	7 cut(s)	588, 718, 915, 961, 988, 1642, 1771
Hpy188I	TCNGA	5 cut(s)	75, 142, 151, 849, 1733
Hpy188III	TCNNGA	9 cut(s)	222, 245, 773, 859, 1019, 1352, 1503, 1742, 1864
Hpy8I	GTNNAC	7 cut(s)	588, 718, 915, 961, 988, 1642, 1771
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	6 cut(s)	146, 206, 395, 820, 1135, 1244
HpyCH4III	ACNGT	4 cut(s)	919, 1150, 1257, 1808
HpyCH4IV	ACGT	3 cut(s)	413, 1314, 1917
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 617, 649, 675, 809, 818, 1236, 1466, 1475
HpyF3I	CTNAG	7 cut(s)	139, 528, 848, 869, 1172, 1470, 1501
HpySE526I	ACGT	3 cut(s)	413, 1314, 1917
Hsp92I	GRCGYC	1 cut(s)	441
HspAI	GCGC	3 cut(s)	92, 261, 1832
Kpn2I	TCCGGA	1 cut(s)	1863
Kzo9I	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	240, 943, 1412
LweI	GCATC	7 cut(s)	855, 1042, 1098, 1425, 1544, 1546, 1654
MaeI	CTAG	6 cut(s)	597, 729, 822, 906, 1421, 1749
MaeII	ACGT	3 cut(s)	413, 1314, 1917
MaeIII	GTNAC	2 cut(s)	481, 1315
MalI	GATC	8 cut(s)	500, 522, 758, 809, 1329, 1491, 1730, 1855
MboI	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
MfeI	CAATTG	1 cut(s)	1386
MflI	RGATCY	1 cut(s)	1853
MhlI	GDGCHC	3 cut(s)	237, 355, 707
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	4 cut(s)	342, 1102, 1182, 1386
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	1493
Mox20I	TGGCCA	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	1537
MroI	TCCGGA	1 cut(s)	1863
MroXI	GAANNNNTTC	1 cut(s)	1283
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	7 cut(s)	255, 294, 303, 330, 975, 1839, 1869
MslI	CAYNNNNRTG	3 cut(s)	633, 1649, 1977
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	1156, 1403
MspI	CCGG	4 cut(s)	116, 813, 1072, 1864
MspR9I	CCNGG	3 cut(s)	487, 814, 1851
MunI	CAATTG	1 cut(s)	1386
Mva1269I	GAATGC	2 cut(s)	805, 1639
MvaI	CCWGG	2 cut(s)	487, 1851
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	9 cut(s)	116, 617, 649, 675, 809, 818, 1236, 1466, 1475
NciI	CCSGG	1 cut(s)	814
NcoI	CCATGG	1 cut(s)	565
NdeI	CATATG	1 cut(s)	969
NdeII	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
NlaIV	GGNNCC	6 cut(s)	236, 1414, 1459, 1507, 1855, 1967
NmeAIII	GCCGAG	1 cut(s)	1364
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	1537
NspI	RCATGY	6 cut(s)	724, 821, 845, 1027, 1478, 1648
PaeI	GCATGC	3 cut(s)	821, 845, 1478
PceI	AGGCCT	1 cut(s)	35
PciI	ACATGT	3 cut(s)	720, 1023, 1644
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	2 cut(s)	805, 1639
PdmI	GAANNNNTTC	1 cut(s)	1283
PfeI	GAWTC	3 cut(s)	218, 686, 749
PflMI	CCANNNNNTGG	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	1849
PinAI	ACCGGT	1 cut(s)	1071
PleI	GAGTC	1 cut(s)	1493
PpsI	GAGTC	1 cut(s)	1493
Ppu21I	YACGTR	1 cut(s)	414
PpuMI	RGGWCCY	2 cut(s)	193, 1505
PscI	ACATGT	3 cut(s)	720, 1023, 1644
Psp5II	RGGWCCY	2 cut(s)	193, 1505
Psp6I	CCWGG	2 cut(s)	485, 1849
PspEI	GGTNACC	1 cut(s)	481
PspFI	CCCAGC	2 cut(s)	620, 1125
PspGI	CCWGG	2 cut(s)	485, 1849
PspN4I	GGNNCC	6 cut(s)	236, 1414, 1459, 1507, 1855, 1967
PspPI	GGNCC	4 cut(s)	193, 623, 1505, 1771
PspPPI	RGGWCCY	2 cut(s)	193, 1505
PstI	CTGCAG	1 cut(s)	1402
PsuI	RGATCY	1 cut(s)	1853
PvuII	CAGCTG	2 cut(s)	1156, 1403
RsaI	GTAC	7 cut(s)	53, 167, 290, 313, 1028, 1758, 1916
RsaNI	GTAC	7 cut(s)	52, 166, 289, 312, 1027, 1757, 1915
RseI	CAYNNNNRTG	3 cut(s)	633, 1649, 1977
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	7 cut(s)	255, 294, 303, 330, 975, 1839, 1869
Sau3AI	GATC	8 cut(s)	498, 520, 756, 807, 1327, 1489, 1728, 1853
Sau96I	GGNCC	4 cut(s)	193, 623, 1505, 1771
SchI	GAGTC	1 cut(s)	1493
ScrFI	CCNGG	3 cut(s)	487, 814, 1851
SduI	GDGCHC	3 cut(s)	237, 355, 707
SfaNI	GCATC	7 cut(s)	855, 1042, 1098, 1425, 1544, 1546, 1654
SfcI	CTRYAG	3 cut(s)	1225, 1398, 1612
SinI	GGWCC	3 cut(s)	193, 1505, 1771
SmiMI	CAYNNNNRTG	3 cut(s)	633, 1649, 1977
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SphI	GCATGC	3 cut(s)	821, 845, 1478
Sse9I	AATT	4 cut(s)	342, 1102, 1182, 1386
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	5 cut(s)	202, 280, 426, 678, 1673
SspMI	CTAG	6 cut(s)	597, 729, 822, 906, 1421, 1749
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	485, 812, 1849
StyI	CCWWGG	2 cut(s)	30, 565
TaaI	ACNGT	4 cut(s)	919, 1150, 1257, 1808
TaiI	ACGT	3 cut(s)	416, 1317, 1920
TaqI	TCGA	6 cut(s)	456, 523, 774, 1020, 1106, 1449
TasI	AATT	4 cut(s)	342, 1102, 1182, 1386
TatI	WGTACW	3 cut(s)	51, 288, 1756
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	218, 686, 749
Tru1I	TTAA	7 cut(s)	255, 294, 303, 330, 975, 1839, 1869
Tru9I	TTAA	7 cut(s)	255, 294, 303, 330, 975, 1839, 1869
TscAI	CASTG	3 cut(s)	934, 1402, 1813
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	6 cut(s)	17, 474, 647, 1263, 1360, 1595
TspGWI	ACGGA	2 cut(s)	338, 1967
TspRI	CASTG	3 cut(s)	934, 1402, 1813
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	3 cut(s)	193, 1505, 1771
XapI	RAATTY	2 cut(s)	1102, 1182
XceI	RCATGY	6 cut(s)	724, 821, 845, 1027, 1478, 1648
XcmI	CCANNNNNNNNNTGG	2 cut(s)	697, 1133
XmnI	GAANNNNTTC	1 cut(s)	1283
XspI	CTAG	6 cut(s)	597, 729, 822, 906, 1421, 1749
Zsp2I	ATGCAT	1 cut(s)	1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.