Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017537

Physical Location & Seq

Genomic Coordinates Forward (+)

96473198 .. 96478117

Gene Structure 4920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGGGCAGCTCTGCCACTCCGGCTGACTTGACTACTGACTCAGACATTTCAGAAGGCGAAGACTGGTACGCCTCCCATTGCATCCAAGACAAGGACCTTCTCCGCAAGAGCCTCACAGATTCCGGAACAACAGGGCTCCATGTTCTGGACTTGGTTAATCGCGCTTCTTTGGAAGCTGACCGGACCCTCTACAATAAGCTGCTTAACAAATGTATCCAGACTGGGCAGCTTAAACAGGCCAGAATTGTCCGTGCCCACATCCTTACTTCCAAGTTCAATGATGACCTTCCCATCCACAACACCGTTCTCAACGCGTACGTCAAGTGCGGCAGTTTGGACGACGCCCACAAGCTGTTCGATGAAATGCCTCACAGGGATTTGGTCACCTGGACAGCCTTGATCTCTGGCTATTCTCAACATGATCGACCTGAGGAAGCACTTGTTCTGTTTCCTCAAATGCTTCGCCATGGACTTCAACCCAACCAGTTCACGCTGTCTAGCTTGCTCAAGGCTGCTGGTGCTGGGCCTGACCCTGATGATAAGCACGGCAGGCAGCTTCATGCCCATTGCTTCAAGTGCGGTTTTGATTCCAACGTTTATGTGGGCACTTCTCTCGTGGACATGTATGCTAGGTGTGGCCGTATGGACGAATCCCAGATCATCTTTGACGCTCTCGACACCAAGAATGAGGTGTCTTGGAATGCTTTGATCGCCGGGCATGCTAGGAAGGGTCAAGGACAGCATGCTCTGAGGTTGTTCTGGAAGATGCTGAGGGGAGGATTCAAGCCCACTCATTTCACTTATTCTAGTGTGTTTACTGTTTGTGCCAGTGCAGGGTCTATGGAGCAAGGTAAGTGGGTTCACTCCCATATGATCAAATCGGGTGTTAACCTTGTTGCTTTTGTTGGGAATACTCTTCTCGACATGTATGCCAAGTCAGGCAGCATTGATGATGCTAAAAAGGTATTTGACCGGTTGGTTAGACGAGACATTGTTTCTTGGAATTCGATGCTTACTGGATACTCCCAGCATGGGCTTGGGAAGGAAACTGTGCAGCTGTTTCAAGAAATGCTTAGGATTGGAATTCAACCTAATGATGTAACATTCCTCTGTGTTCTTACTGCCTGTAGCCATGCTCGCCTCTTGGATGAAGGACAGTATTATTTTCACTTGATGAGGAAAAGGTTCAAAATAGAACCACAGGTTTGGCATTACGTTACAATGGTTGATCTTCTTGGCCGAGCAGGTCTTCTTGATAGAGCTGACAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTCTGGGGAGCCTTGCTAGGTGCTTGTAGGATGCACAACAAGATTGACTTGGGTGCCTATGCTGCTGAGCGTACTTTTGAGCTTGATCCTTACGATTCAGGACCCTATATTATACTCGCTAATATGTACGCATCTGCTGGAAGATTGAATGATGCTGCAAAAGTGAGAAAGATGATGAAAGAGAGTGGGGTGAAAAAGGAACCTGCCTGTAGTTGGGTCGAGATTGAGAATGCAGTCCACATGTTTGTGGCAAACGATGATGCACACCCGCAAAGAGCAGAGATATATAGGATGTGGGAGATGATTAGCAAGAAGATAAAGGAGGTTGGATACGTTCCAGACACTAGCCATGTACTCTTCTTTGTGGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTTTCACAGTGAGAAGCTTGCACTCGCATTTGCACTTCTTAACACTTCTCCTGGATCCACCATCCGGATCAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCGGCAATCAAGTACGTCTCAAAGGTGGAAAGGCGAGAAATCATTGTGAGAGACACCAATCGGTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

637

Amino Acids

71.96

Weight (kDa)

7.87

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	126 - 171	4.6e-12	PPR repeat family
PPR	PF01535	128 - 158	7.6e-08	PPR repeat
PPR_2	PF13041	229 - 276	1.1e-12	PPR repeat family
PPR	PF01535	231 - 261	4.7e-06	PPR repeat
PPR_2	PF13041	329 - 377	3.3e-12	PPR repeat family
PPR	PF01535	332 - 362	2.1e-07	PPR repeat
E_motif	PF20431	447 - 509	3.5e-20	E motif
DYW_deaminase	PF14432	545 - 637	1.5e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24000
fragaria_vesca	FvH4_3g00130
malus_domestica	MD05G1044700.v1.1
prunus_persica	Prupe.4G001500_v2.0.a1
pyrus_communis	pycom05g03730
rosa_chinensis	RchiOBHm_Chr5g0000171
rosa_laevigata	RLG00000030847
rosa_multiflora	Rmu_ssc0000243.1_g000013
rosa_roxburghii	Rroxscaffold_1G00075920
rosa_rugosa	Rorug04G0382100
rosa_samantha	Rh5CG001500
rosa_wichuraiana	Rw5G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1235, 1516
AccB1I	GGYRCC	1 cut(s)	1358
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccII	CGCG	2 cut(s)	162, 314
AccIII	TCCGGA	2 cut(s)	122, 1764
AciI	CCGC	4 cut(s)	103, 327, 579, 1574
AclI	AACGTT	1 cut(s)	594
AclWI	GGATC	4 cut(s)	1385, 1749, 1762, 1775
AcoI	YGGCCR	2 cut(s)	637, 1237
AcsI	RAATTY	2 cut(s)	1003, 1083
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	6 cut(s)	68, 317, 1378, 1433, 1659, 1817
AfiI	CCNNNNNNNGG	6 cut(s)	91, 145, 834, 1032, 1518, 1764
AflIII	ACRYGT	4 cut(s)	312, 621, 924, 1545
AgeI	ACCGGT	1 cut(s)	972
AgsI	TTSAA	9 cut(s)	277, 476, 574, 784, 1064, 1088, 1189, 1292, 1453
AjnI	CCWGG	2 cut(s)	386, 1750
Alw26I	GTCTC	3 cut(s)	981, 1825, 1848
AlwI	GGATC	4 cut(s)	1385, 1749, 1762, 1775
Aor13HI	TCCGGA	2 cut(s)	122, 1764
AoxI	GGCC	4 cut(s)	237, 524, 637, 1237
ApoI	RAATTY	2 cut(s)	1003, 1083
AsiGI	ACCGGT	1 cut(s)	972
Asp700I	GAANNNNTTC	1 cut(s)	1184
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	5 cut(s)	94, 183, 524, 1406, 1672
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	3 cut(s)	376, 1507, 1805
AvaII	GGWCC	4 cut(s)	94, 183, 1406, 1672
AxyI	CCTNAGG	1 cut(s)	429
BaeGI	GKGCMC	2 cut(s)	256, 608
BaeI	ACNNNNGTAYC	2 cut(s)	196, 229
BamHI	GGATCC	1 cut(s)	1754
BanI	GGYRCC	1 cut(s)	1358
BanII	GRGCYC	1 cut(s)	138
BauI	CACGAG	1 cut(s)	614
BbsI	GAAGAC	2 cut(s)	66, 1241
BbvCI	CCTCAGC	1 cut(s)	770
BccI	CCATC	4 cut(s)	299, 1769, 1877, 1878
BceAI	ACGGC	2 cut(s)	562, 624
BcgI	CGANNNNNNTGC	4 cut(s)	595, 629, 911, 945
BciT130I	CCWGG	2 cut(s)	388, 1752
BciVI	GTATCC	3 cut(s)	224, 1013, 1628
BclI	TGATCA	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	981, 1825, 1848
BfaI	CTAG	6 cut(s)	498, 630, 723, 807, 1322, 1650
BfmI	CTRYAG	3 cut(s)	1126, 1299, 1513
BfuAI	ACCTGC	2 cut(s)	1235, 1516
BfuI	GTATCC	3 cut(s)	224, 1013, 1628
BglI	GCCNNNNNGGC	1 cut(s)	20
BlpI	GCTNAGC	1 cut(s)	1371
Bme1390I	CCNGG	3 cut(s)	388, 715, 1752
Bme18I	GGWCC	4 cut(s)	94, 183, 1406, 1672
BmgT120I	GGNCC	5 cut(s)	94, 183, 524, 1406, 1672
BmiI	GGNNCC	8 cut(s)	137, 185, 1315, 1360, 1408, 1506, 1756, 1868
BmrFI	CCNGG	3 cut(s)	388, 715, 1752
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	8 cut(s)	90, 756, 943, 999, 1326, 1445, 1447, 1555
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	66, 1241
Bpu10I	CCTNAGC	2 cut(s)	770, 1073
Bpu1102I	GCTNAGC	1 cut(s)	1371
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	715
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	4 cut(s)	122, 180, 972, 1764
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 145, 834, 1032, 1518, 1764
Bse118I	RCCGGY	1 cut(s)	972
Bse1I	ACTGG	5 cut(s)	68, 226, 484, 828, 1021
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	2 cut(s)	76, 565
BseAI	TCCGGA	2 cut(s)	122, 1764
BseBI	CCWGG	2 cut(s)	388, 1752
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	7 cut(s)	81, 258, 291, 1153, 1341, 1602, 1761
BseLI	CCNNNNNNNGG	6 cut(s)	91, 145, 834, 1032, 1518, 1764
BseMI	GCAATG	2 cut(s)	76, 565
BseMII	CTCAG	5 cut(s)	54, 420, 740, 761, 1362
BseNI	ACTGG	5 cut(s)	68, 226, 484, 828, 1021
BseSI	GKGCMC	2 cut(s)	256, 608
BseYI	CCCAGC	2 cut(s)	521, 1026
BsgI	GTGCAG	2 cut(s)	852, 1073
Bsh1236I	CGCG	2 cut(s)	162, 314
BshFI	GGCC	4 cut(s)	239, 526, 639, 1239
BshNI	GGYRCC	1 cut(s)	1358
BshTI	ACCGGT	1 cut(s)	972
BsiSI	CCGG	6 cut(s)	20, 123, 181, 714, 973, 1765
BsiWI	CGTACG	1 cut(s)	315
BslI	CCNNNNNNNGG	6 cut(s)	91, 145, 834, 1032, 1518, 1764
BsmAI	GTCTC	3 cut(s)	981, 1825, 1848
BsmBI	CGTCTC	1 cut(s)	1825
BsmI	GAATGC	2 cut(s)	706, 1540
BsnI	GGCC	4 cut(s)	239, 526, 639, 1239
Bsp1286I	GDGCHC	3 cut(s)	138, 256, 608
Bsp13I	TCCGGA	2 cut(s)	122, 1764
Bsp143I	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
Bsp1720I	GCTNAGC	1 cut(s)	1371
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	4 cut(s)	103, 327, 579, 1574
BspANI	GGCC	4 cut(s)	239, 526, 639, 1239
BspCNI	CTCAG	5 cut(s)	53, 421, 741, 762, 1363
BspEI	TCCGGA	2 cut(s)	122, 1764
BspFNI	CGCG	2 cut(s)	162, 314
BspLI	GGNNCC	8 cut(s)	137, 185, 1315, 1360, 1408, 1506, 1756, 1868
BspMAI	CTGCAG	1 cut(s)	1303
BspMI	ACCTGC	2 cut(s)	1235, 1516
BspPI	GGATC	4 cut(s)	1385, 1749, 1762, 1775
BspT107I	GGYRCC	1 cut(s)	1358
BsrDI	GCAATG	2 cut(s)	76, 565
BsrFI	RCCGGY	1 cut(s)	972
BsrI	ACTGG	5 cut(s)	68, 226, 484, 828, 1021
BssAI	RCCGGY	1 cut(s)	972
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
BssNI	GRCGYC	1 cut(s)	342
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	2 cut(s)	388, 1752
Bst4CI	ACNGT	5 cut(s)	304, 820, 1051, 1158, 1709
Bst6I	CTCTTC	2 cut(s)	921, 1667
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	6 cut(s)	503, 551, 720, 744, 1138, 1719
BstDEI	CTNAG	6 cut(s)	40, 429, 749, 770, 1073, 1371
BstDSI	CCRYGG	1 cut(s)	466
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	7 cut(s)	81, 258, 291, 1153, 1341, 1602, 1761
BstFNI	CGCG	2 cut(s)	162, 314
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	9 cut(s)	402, 424, 660, 711, 876, 1231, 1393, 1757, 1770
BstMAI	GTCTC	3 cut(s)	981, 1825, 1848
BstMBI	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 518, 550, 576, 710, 719, 1137, 1367
BstNI	CCWGG	2 cut(s)	388, 1752
BstNSI	RCATGY	5 cut(s)	625, 722, 746, 928, 1549
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	3 cut(s)	386, 713, 1750
BstSFI	CTRYAG	3 cut(s)	1126, 1299, 1513
BstSLI	GKGCMC	2 cut(s)	256, 608
BstUI	CGCG	2 cut(s)	162, 314
BstV2I	GAAGAC	2 cut(s)	66, 1241
BstX2I	RGATCY	1 cut(s)	1754
BstXI	CCANNNNNNTGG	1 cut(s)	1206
BstYI	RGATCY	1 cut(s)	1754
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	3 cut(s)	224, 1013, 1628
BsuRI	GGCC	4 cut(s)	239, 526, 639, 1239
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	7 cut(s)	81, 258, 291, 1153, 1341, 1602, 1761
BtsI	GCAGTG	1 cut(s)	1296
BtsIMutI	CAGTG	3 cut(s)	835, 1296, 1714
BveI	ACCTGC	2 cut(s)	1235, 1516
Cac8I	GCNNGC	6 cut(s)	503, 551, 720, 744, 1138, 1719
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	972
Cfr13I	GGNCC	5 cut(s)	94, 183, 524, 1406, 1672
CseI	GACGC	2 cut(s)	350, 677
Csp6I	GTAC	6 cut(s)	67, 316, 1377, 1432, 1658, 1816
CspAI	ACCGGT	1 cut(s)	972
CspCI	CAANNNNNGTGG	2 cut(s)	836, 871
CviQI	GTAC	6 cut(s)	67, 316, 1377, 1432, 1658, 1816
DdeI	CTNAG	6 cut(s)	40, 429, 749, 770, 1073, 1371
DpnI	GATC	9 cut(s)	401, 423, 659, 710, 875, 1230, 1392, 1756, 1769
DpnII	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
EaeI	YGGCCR	2 cut(s)	637, 1237
Eam1104I	CTCTTC	2 cut(s)	921, 1667
EarI	CTCTTC	2 cut(s)	921, 1667
Eco130I	CCWWGG	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	4 cut(s)	94, 183, 1406, 1672
Eco81I	CCTNAGG	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	382
EcoO109I	RGGNCCY	2 cut(s)	94, 1406
EcoO65I	GGTNACC	1 cut(s)	382
EcoRI	GAATTC	2 cut(s)	1003, 1083
EcoRII	CCWGG	2 cut(s)	386, 1750
EcoT14I	CCWWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	1825
FalI	AAGNNNNNCTT	4 cut(s)	1056, 1088, 1337, 1369
FauI	CCCGC	1 cut(s)	1581
FauNDI	CATATG	1 cut(s)	870
FbaI	TGATCA	1 cut(s)	873
FokI	GGATG	7 cut(s)	68, 245, 278, 1160, 1348, 1609, 1748
FriOI	GRGCYC	1 cut(s)	138
FspBI	CTAG	6 cut(s)	498, 630, 723, 807, 1322, 1650
GlaI	GCGC	1 cut(s)	163
GsaI	CCCAGC	2 cut(s)	525, 1030
HaeIII	GGCC	4 cut(s)	239, 526, 639, 1239
HapII	CCGG	6 cut(s)	20, 123, 181, 714, 973, 1765
HgaI	GACGC	2 cut(s)	350, 677
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	1715
HinfI	GANTC	6 cut(s)	38, 119, 587, 650, 780, 1400
HpaI	GTTAAC	1 cut(s)	889
HpaII	CCGG	6 cut(s)	20, 123, 181, 714, 973, 1765
HphI	GGTGA	3 cut(s)	376, 1507, 1805
Hpy166II	GTNNAC	7 cut(s)	489, 619, 816, 862, 889, 1543, 1672
Hpy188I	TCNGA	3 cut(s)	43, 52, 750
Hpy8I	GTNNAC	7 cut(s)	489, 619, 816, 862, 889, 1543, 1672
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	6 cut(s)	47, 107, 296, 721, 1036, 1145
HpyCH4III	ACNGT	5 cut(s)	304, 820, 1051, 1158, 1709
HpyCH4IV	ACGT	5 cut(s)	318, 594, 1215, 1638, 1818
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 518, 550, 576, 710, 719, 1137, 1367
HpyF3I	CTNAG	6 cut(s)	40, 429, 749, 770, 1073, 1371
HpySE526I	ACGT	5 cut(s)	318, 594, 1215, 1638, 1818
Hsp92I	GRCGYC	1 cut(s)	342
HspAI	GCGC	1 cut(s)	162
Kpn2I	TCCGGA	2 cut(s)	122, 1764
Ksp22I	TGATCA	1 cut(s)	873
KspAI	GTTAAC	1 cut(s)	889
Kzo9I	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
LmnI	GCTCC	3 cut(s)	141, 844, 1313
LweI	GCATC	8 cut(s)	90, 756, 943, 999, 1326, 1445, 1447, 1555
MaeI	CTAG	6 cut(s)	498, 630, 723, 807, 1322, 1650
MaeII	ACGT	5 cut(s)	318, 594, 1215, 1638, 1818
MaeIII	GTNAC	3 cut(s)	382, 1099, 1216
MalI	GATC	9 cut(s)	401, 423, 659, 710, 875, 1230, 1392, 1756, 1769
MboI	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
MboII	GAAGA	9 cut(s)	71, 775, 908, 1223, 1241, 1458, 1630, 1654, 1786
MflI	RGATCY	1 cut(s)	1754
MhlI	GDGCHC	3 cut(s)	138, 256, 608
MluCI	AATT	3 cut(s)	243, 1003, 1083
MluI	ACGCGT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	615, 1612
MroI	TCCGGA	2 cut(s)	122, 1764
MroXI	GAANNNNTTC	1 cut(s)	1184
MseI	TTAA	5 cut(s)	156, 204, 231, 888, 1740
MslI	CAYNNNNRTG	2 cut(s)	1550, 1878
MspA1I	CMGCKG	2 cut(s)	1057, 1304
MspI	CCGG	6 cut(s)	20, 123, 181, 714, 973, 1765
MspR9I	CCNGG	3 cut(s)	388, 715, 1752
Mva1269I	GAATGC	2 cut(s)	706, 1540
MvaI	CCWGG	2 cut(s)	388, 1752
MvnI	CGCG	2 cut(s)	162, 314
MwoI	GCNNNNNNNGC	8 cut(s)	20, 518, 550, 576, 710, 719, 1137, 1367
NciI	CCSGG	1 cut(s)	715
NcoI	CCATGG	1 cut(s)	466
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
NlaIV	GGNNCC	8 cut(s)	137, 185, 1315, 1360, 1408, 1506, 1756, 1868
NmeAIII	GCCGAG	1 cut(s)	1265
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	5 cut(s)	625, 722, 746, 928, 1549
PaeI	GCATGC	2 cut(s)	722, 746
PciI	ACATGT	3 cut(s)	621, 924, 1545
PctI	GAATGC	2 cut(s)	706, 1540
PdmI	GAANNNNTTC	1 cut(s)	1184
PfeI	GAWTC	5 cut(s)	119, 587, 650, 780, 1400
Pfl23II	CGTACG	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	1750
PinAI	ACCGGT	1 cut(s)	972
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	2 cut(s)	94, 1406
PscI	ACATGT	3 cut(s)	621, 924, 1545
Psp1406I	AACGTT	1 cut(s)	594
Psp5II	RGGWCCY	2 cut(s)	94, 1406
Psp6I	CCWGG	2 cut(s)	386, 1750
PspEI	GGTNACC	1 cut(s)	382
PspFI	CCCAGC	2 cut(s)	521, 1026
PspGI	CCWGG	2 cut(s)	386, 1750
PspLI	CGTACG	1 cut(s)	315
PspN4I	GGNNCC	8 cut(s)	137, 185, 1315, 1360, 1408, 1506, 1756, 1868
PspPI	GGNCC	5 cut(s)	94, 183, 524, 1406, 1672
PspPPI	RGGWCCY	2 cut(s)	94, 1406
PstI	CTGCAG	1 cut(s)	1303
PsuI	RGATCY	1 cut(s)	1754
PvuII	CAGCTG	2 cut(s)	1057, 1304
RsaI	GTAC	6 cut(s)	68, 317, 1378, 1433, 1659, 1817
RsaNI	GTAC	6 cut(s)	67, 316, 1377, 1432, 1658, 1816
RseI	CAYNNNNRTG	2 cut(s)	1550, 1878
SaqAI	TTAA	5 cut(s)	156, 204, 231, 888, 1740
Sau3AI	GATC	9 cut(s)	399, 421, 657, 708, 873, 1228, 1390, 1754, 1767
Sau96I	GGNCC	5 cut(s)	94, 183, 524, 1406, 1672
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	388, 715, 1752
SduI	GDGCHC	3 cut(s)	138, 256, 608
SfaNI	GCATC	8 cut(s)	90, 756, 943, 999, 1326, 1445, 1447, 1555
SfcI	CTRYAG	3 cut(s)	1126, 1299, 1513
SinI	GGWCC	4 cut(s)	94, 183, 1406, 1672
SmiMI	CAYNNNNRTG	2 cut(s)	1550, 1878
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	2 cut(s)	722, 746
Sse9I	AATT	3 cut(s)	243, 1003, 1083
SsiI	CCGC	4 cut(s)	103, 327, 579, 1574
SspMI	CTAG	6 cut(s)	498, 630, 723, 807, 1322, 1650
StyD4I	CCNGG	3 cut(s)	386, 713, 1750
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	5 cut(s)	304, 820, 1051, 1158, 1709
TaiI	ACGT	5 cut(s)	321, 597, 1218, 1641, 1821
TaqI	TCGA	6 cut(s)	357, 424, 675, 921, 1007, 1524
TasI	AATT	3 cut(s)	243, 1003, 1083
TatI	WGTACW	1 cut(s)	1657
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	5 cut(s)	119, 587, 650, 780, 1400
Tru1I	TTAA	5 cut(s)	156, 204, 231, 888, 1740
Tru9I	TTAA	5 cut(s)	156, 204, 231, 888, 1740
TscAI	CASTG	3 cut(s)	835, 1303, 1714
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	5 cut(s)	375, 548, 1164, 1261, 1496
TspGWI	ACGGA	2 cut(s)	239, 1868
TspRI	CASTG	3 cut(s)	835, 1303, 1714
Van91I	CCANNNNNTGG	1 cut(s)	145
VpaK11BI	GGWCC	4 cut(s)	94, 183, 1406, 1672
XapI	RAATTY	2 cut(s)	1003, 1083
XceI	RCATGY	5 cut(s)	625, 722, 746, 928, 1549
XcmI	CCANNNNNNNNNTGG	2 cut(s)	598, 1034
XmnI	GAANNNNTTC	1 cut(s)	1184
XspI	CTAG	6 cut(s)	498, 630, 723, 807, 1322, 1650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.