RchiOBHm_Chr5g0008901

Glyoxysomal processing protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007916
Physical Location & Seq
Reverse (-)
5837578 .. 5840292
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28983

Sequence Viewer

Length: 945 bp
ATGGGCTTACCGGAAATCGTCGGTTTTGCTCGGAATTTCGCCGTCATGGTCAGAGTCAAAGGCCCTGACCCCAAAGGCCTCAAAATGCGAAACCATGCTTTCCACCAGTACAACTCTGGGACGACGACTATATCAGCTTCCGGAATGTTATTGCCGGAAACTCTTTACGACGGTGAGGTCGCGAACCAGCTATGCGGCGGCGGAAGTGACCGGTCACCGGCTCTGGTTGTGACTGTTGCTTCAGTTGTTGAGCCGTTTCTGTCTTTGCAACACAGAGAGAGCCTCGCCCAGGGCAGGCCTGAGTTGATTCCTGGGGTTGAGATTGATGTTATGGCAGAGGATGACATGTCGTTGGAGAAAGGCTCGGAGAAAGGACCTCCATGCTGGTTTGCAGCGCAGCTTTTGACCCTGATTGACGTTCCTGCATCTGCTATTGCACTCCAATCTCTTATTGATGCTTCTATAAGCTCTCCAGAGCATGGATGGGAGGTTGGTTGGTCTTTAGCATCACATTATAATCCTCAGCCAGTTATGGATGTTATTCAGACGCAGGTAAATTTGGCAGTTAGAGAATTGAGGAACGCAAGTCTTACAGGAAAGTCAACTACAAGAATCGCAATTCTTGGAGTATCCTTGCTTTCTAAGGATGTGCCAAATATAACTATATCACCCTCCAATAAAAGGGGACACTTTCTTGTAGCAGTGGGTTCTCCTTTTGGTATCCTGTCACCTGTGCACTTCTTTAACAGCATATCAGTGGGGTCCATTGCCAACTGCTATCCTCCTAATTCATCTTATAGTCCATTGCTGATGGCAGACATACGGTGTCTTCCTGGAGCGGAAGGTGGTCCAGTTTTGAGCGAGAATGCACAACTTATTGGTATGTTGATTAGACCATTGAGGCAGAAGACTAGCGGTGCTGAAGTTCAGGGAAAGCATTTTTAG

Protein Analysis

314

Amino Acids

33.47

Weight (kDa)

6.06

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin_2 PF13365 187 - 295 2.9e-09 Trypsin-like peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AasI GACNNNNNNGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 541
AccB7I CCANNNNNTGG 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 839
AccII CGCG 1 cut(s) 182
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 5 cut(s) 195, 198, 201, 839, 915
AcsI RAATTY 2 cut(s) 34, 556
AcuI CTGAAG 2 cut(s) 225, 942
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 5 cut(s) 217, 289, 294, 479, 681
AflIII ACRYGT 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 210
AjnI CCWGG 3 cut(s) 288, 310, 832
AluBI AGCT 4 cut(s) 137, 190, 400, 468
AluI AGCT 4 cut(s) 137, 190, 400, 468
Alw21I GWGCWC 1 cut(s) 738
Alw44I GTGCAC 1 cut(s) 734
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 3 cut(s) 61, 76, 296
ApaLI GTGCAC 1 cut(s) 734
ApeKI GCWGC 2 cut(s) 392, 397
ApoI RAATTY 2 cut(s) 34, 556
AsiGI ACCGGT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 4 cut(s) 62, 374, 762, 848
AsuHPI GGTGA 4 cut(s) 185, 207, 660, 720
AvaII GGWCC 3 cut(s) 374, 762, 848
BaeGI GKGCMC 1 cut(s) 738
BbsI GAAGAC 2 cut(s) 821, 914
Bbv12I GWGCWC 1 cut(s) 738
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 2 cut(s) 404, 409
BccI CCATC 2 cut(s) 477, 805
BceAI ACGGC 2 cut(s) 26, 238
BciT130I CCWGG 3 cut(s) 290, 312, 834
BciVI GTATCC 2 cut(s) 640, 731
BfaI CTAG 1 cut(s) 912
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 2 cut(s) 640, 731
BisI GCNGC 4 cut(s) 196, 199, 393, 398
BlsI GCNGC 4 cut(s) 197, 200, 394, 399
Bme1390I CCNGG 3 cut(s) 290, 312, 834
Bme18I GGWCC 3 cut(s) 374, 762, 848
BmgT120I GGNCC 4 cut(s) 62, 374, 762, 848
BmiI GGNNCC 1 cut(s) 763
BmrFI CCNGG 3 cut(s) 290, 312, 834
BmsI GCATC 3 cut(s) 434, 445, 515
BpiI GAAGAC 2 cut(s) 821, 914
BplI GAGNNNNNCTC 4 cut(s) 267, 299, 347, 379
BpmI CTGGAG 2 cut(s) 456, 855
Bpu10I CCTNAGC 1 cut(s) 522
BsaJI CCNNGG 3 cut(s) 288, 289, 311
BsaWI WCCGGW 3 cut(s) 10, 140, 210
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 289, 294, 479, 681
Bse118I RCCGGY 2 cut(s) 210, 217
Bse1I ACTGG 3 cut(s) 106, 527, 851
Bse3DI GCAATG 2 cut(s) 765, 803
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 3 cut(s) 290, 312, 834
BseDI CCNNGG 3 cut(s) 288, 289, 311
BseGI GGATG 4 cut(s) 346, 488, 541, 652
BseLI CCNNNNNNNGG 5 cut(s) 217, 289, 294, 479, 681
BseMI GCAATG 2 cut(s) 765, 803
BseMII CTCAG 2 cut(s) 291, 536
BseNI ACTGG 3 cut(s) 106, 527, 851
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 2 cut(s) 404, 409
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 3 cut(s) 63, 78, 298
BshTI ACCGGT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 5 cut(s) 11, 141, 155, 211, 218
BslFI GGGAC 2 cut(s) 133, 699
BslI CCNNNNNNNGG 5 cut(s) 217, 289, 294, 479, 681
BsmFI GGGAC 2 cut(s) 133, 699
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 3 cut(s) 63, 78, 298
Bsp1286I GDGCHC 1 cut(s) 738
Bsp13I TCCGGA 1 cut(s) 140
Bsp68I TCGCGA 1 cut(s) 182
BspACI CCGC 5 cut(s) 195, 198, 201, 839, 915
BspANI GGCC 3 cut(s) 63, 78, 298
BspCNI CTCAG 2 cut(s) 292, 535
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 763
BspMI ACCTGC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 839
BsrDI GCAATG 2 cut(s) 765, 803
BsrFI RCCGGY 2 cut(s) 210, 217
BsrI ACTGG 3 cut(s) 106, 527, 851
BssAI RCCGGY 2 cut(s) 210, 217
BssECI CCNNGG 3 cut(s) 288, 289, 311
Bst2UI CCWGG 3 cut(s) 290, 312, 834
Bst4CI ACNGT 3 cut(s) 173, 235, 825
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 300, 522, 642
BstEII GGTNACC 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 4 cut(s) 346, 488, 541, 652
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 397
BstNI CCWGG 3 cut(s) 290, 312, 834
BstNSI RCATGY 1 cut(s) 349
BstPI GGTNACC 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 288, 310, 832
BstSLI GKGCMC 1 cut(s) 738
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 404, 409
BstV2I GAAGAC 2 cut(s) 821, 914
BsuI GTATCC 2 cut(s) 640, 731
BsuRI GGCC 3 cut(s) 63, 78, 298
BtsCI GGATG 4 cut(s) 346, 488, 541, 652
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 762
BtuMI TCGCGA 1 cut(s) 182
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 1 cut(s) 397
Cfr10I RCCGGY 2 cut(s) 210, 217
Cfr13I GGNCC 4 cut(s) 62, 374, 762, 848
CseI GACGC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 210
CviAII CATG 5 cut(s) 46, 95, 346, 381, 479
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 3 cut(s) 300, 522, 642
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 216
Eco147I AGGCCT 2 cut(s) 78, 298
Eco47I GGWCC 3 cut(s) 374, 762, 848
Eco57I CTGAAG 2 cut(s) 225, 942
Eco91I GGTNACC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 2 cut(s) 62, 374
EcoO65I GGTNACC 1 cut(s) 213
EcoRII CCWGG 3 cut(s) 288, 310, 832
FaeI CATG 5 cut(s) 49, 98, 349, 384, 482
FaqI GGGAC 2 cut(s) 133, 699
FatI CATG 5 cut(s) 45, 94, 345, 380, 478
Fnu4HI GCNGC 4 cut(s) 196, 199, 393, 398
FokI GGATG 4 cut(s) 353, 495, 548, 659
Fsp4HI GCNGC 4 cut(s) 196, 199, 393, 398
FspBI CTAG 1 cut(s) 912
GlaI GCGC 1 cut(s) 396
GluI GCNGC 4 cut(s) 196, 199, 393, 398
GsuI CTGGAG 2 cut(s) 456, 855
HaeIII GGCC 3 cut(s) 63, 78, 298
HapII CCGG 5 cut(s) 11, 141, 155, 211, 218
HgaI GACGC 1 cut(s) 556
HhaI GCGC 1 cut(s) 397
Hin1II CATG 5 cut(s) 49, 98, 349, 384, 482
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 3 cut(s) 54, 307, 612
HpaII CCGG 5 cut(s) 11, 141, 155, 211, 218
HphI GGTGA 4 cut(s) 185, 207, 660, 720
Hpy166II GTNNAC 2 cut(s) 603, 736
Hpy188I TCNGA 4 cut(s) 33, 53, 367, 546
Hpy188III TCNNGA 3 cut(s) 141, 181, 473
Hpy8I GTNNAC 2 cut(s) 603, 736
Hpy99I CGWCG 3 cut(s) 23, 127, 173
HpyAV CCTTC 1 cut(s) 836
HpyCH4III ACNGT 3 cut(s) 173, 235, 825
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 6 cut(s) 268, 392, 425, 437, 736, 869
HpyF3I CTNAG 3 cut(s) 300, 522, 642
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 5 cut(s) 49, 98, 349, 384, 482
HspAI GCGC 1 cut(s) 395
Kpn2I TCCGGA 1 cut(s) 140
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 2 cut(s) 404, 409
LweI GCATC 3 cut(s) 434, 445, 515
MaeI CTAG 1 cut(s) 912
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 4 cut(s) 206, 213, 229, 726
MbiI CCGCTC 1 cut(s) 839
MboII GAAGA 2 cut(s) 821, 919
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 5 cut(s) 34, 556, 572, 618, 787
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 333
MroI TCCGGA 1 cut(s) 140
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 755
MspI CCGG 5 cut(s) 11, 141, 155, 211, 218
MspR9I CCNGG 3 cut(s) 290, 312, 834
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 3 cut(s) 290, 312, 834
MvnI CGCG 1 cut(s) 182
NlaIII CATG 5 cut(s) 49, 98, 349, 384, 482
NlaIV GGNNCC 1 cut(s) 763
NmuCI GTSAC 4 cut(s) 206, 213, 229, 726
NruI TCGCGA 1 cut(s) 182
NspI RCATGY 1 cut(s) 349
PasI CCCWGGG 1 cut(s) 289
PceI AGGCCT 2 cut(s) 78, 298
PciI ACATGT 1 cut(s) 345
PctI GAATGC 1 cut(s) 871
PfeI GAWTC 2 cut(s) 307, 612
PflMI CCANNNNNTGG 1 cut(s) 479
PfoI TCCNGGA 1 cut(s) 832
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 4 cut(s) 197, 200, 394, 399
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 374
PscI ACATGT 1 cut(s) 345
PsiI TTATAA 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 3 cut(s) 288, 310, 832
PspEI GGTNACC 1 cut(s) 213
PspGI CCWGG 3 cut(s) 288, 310, 832
PspN4I GGNNCC 1 cut(s) 763
PspPI GGNCC 4 cut(s) 62, 374, 762, 848
PspPPI RGGWCCY 1 cut(s) 374
RruI TCGCGA 1 cut(s) 182
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 4 cut(s) 196, 199, 393, 398
Sau96I GGNCC 4 cut(s) 62, 374, 762, 848
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 3 cut(s) 290, 312, 834
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 3 cut(s) 434, 445, 515
SinI GGWCC 3 cut(s) 374, 762, 848
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 5 cut(s) 34, 556, 572, 618, 787
SseBI AGGCCT 2 cut(s) 78, 298
SsiI CCGC 5 cut(s) 195, 198, 201, 839, 915
SspMI CTAG 1 cut(s) 912
StuI AGGCCT 2 cut(s) 78, 298
StyD4I CCNGG 3 cut(s) 288, 310, 832
TaaI ACNGT 3 cut(s) 173, 235, 825
TaiI ACGT 1 cut(s) 420
TasI AATT 5 cut(s) 34, 556, 572, 618, 787
TatI WGTACW 1 cut(s) 108
TauI GCSGC 2 cut(s) 198, 201
TfiI GAWTC 2 cut(s) 307, 612
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 2 cut(s) 708, 762
TseFI GTSAC 4 cut(s) 206, 213, 229, 726
TseI GCWGC 2 cut(s) 392, 397
Tsp45I GTSAC 4 cut(s) 206, 213, 229, 726
TspDTI ATGAA 1 cut(s) 780
TspRI CASTG 2 cut(s) 708, 762
Van91I CCANNNNNTGG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 734
VpaK11BI GGWCC 3 cut(s) 374, 762, 848
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 2 cut(s) 34, 556
XceI RCATGY 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 2 cut(s) 113, 480
XspI CTAG 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.