Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007916

Physical Location & Seq

Genomic Coordinates Reverse (-)

9835081 .. 9838177

Gene Structure 3097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATTCGCTGCTGCTGGGATGCAATCGACTGGCTCGAGCCGGAGAGGGAGTCGTGGGCGTCTGGGAGGTCGAGGTCAGCTTGTACAAGTGAGATCGAGGTCGTCGTTGGCGGCGGTGTGCAGGTGGAGTCGTCGCTGGAGGAGTGCACTGCACAGATTGATGTTCCTGCATCTGCTGTTGCACTCCAATCTCTAATTGATGCTTCTATAAGCTCTCCAGAGCATGGATGGCAGGTTGGTTTGTCTTTAGCCTCACATAATAATCCTCAGCCAGTTATGGATGTTATTCAGACACAGGTAGATTTGGCAGTTAGAGAATTAGGGAACGCAAGTCTTACGGGAAAGTCAACTACAAAAATCGCAATTCTTGGAGTATCCTTGTTTTCTAAGAACTCAAAAGGAGCGGAAGGTGGTCCAATTTTGAGCGAGACTGCACAACTTATTGGTATGTTGATTAGACCATTGAGGCAGAAGACTAGCGGTGCTGAAGTTCAGCTGGTAATTTCGTGGAAAGCCATTGCAACTGCTTGTAGTGACTTGCTGCAGAAGGAGCCTCATTATGCAGAAAAAGGGATTTATTATGACAAAGGAAACTTAAATGCAGTAGGTCTGATACTCACAAATGCTCACCTCTTAGAACCATGGAGATTTGGTAAAAGGACGGCAAGTGACGGATCCATTTCTGAGGCTCCTCCCCTCCTATCTGACGGATCTCTATCTCCAGGGTATAAAGGAGTTGCTGGTGAGCAACAGATTCAAGGCTTGCTGCCAGGGCTTCACAAGAATGGAGATCCCTCAGTTGGGAATGAATATAGAGCATTGAACTCATCTTACAAAGGCCATAGAAACATTCGTGTCCGCCTGGATCATCCACCCTTGGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010467 GO:0016485 GO:0016787 GO:0017171 GO:0019538 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

297

Amino Acids

31.67

Weight (kDa)

5.68

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28320
fragaria_vesca	FvH4_3g08860 FvH4_3g08860 FvH4_3g08860
malus_domestica	MD10G1291600.v1.1
prunus_persica	Prupe.4G050600_v2.0.a1 Prupe.4G050600_v2.0.a1 Prupe.4G050600_v2.0.a1
pyrus_communis	pycom10g24380
rosa_chinensis	RchiOBHm_Chr5g0008891 RchiOBHm_Chr5g0008901
rosa_laevigata	RLG00000022692 RLG00000031614
rosa_multiflora	Rmu_co8519179.1_g000001 Rmu_sc0004677.1_g000010
rosa_roxburghii	Rroxscaffold_1G00067110 Rroxscaffold_1G00067730
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068700 Rh5BG065400 Rh5CG076600 Rh5DG064400
rosa_wichuraiana	Rw5G006430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	2 cut(s)	112, 223
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	404
AciI	CCGC	5 cut(s)	111, 114, 404, 480, 859
AclWI	GGATC	5 cut(s)	669, 682, 718, 785, 873
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	3 cut(s)	224, 800, 801
AgsI	TTSAA	2 cut(s)	758, 823
AjnI	CCWGG	3 cut(s)	721, 769, 861
AluBI	AGCT	3 cut(s)	80, 213, 496
AluI	AGCT	3 cut(s)	80, 213, 496
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	422
Alw44I	GTGCAC	1 cut(s)	145
AlwI	GGATC	5 cut(s)	669, 682, 718, 785, 873
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	838
ApaLI	GTGCAC	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	9, 12, 541, 766
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	620, 755
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	528, 753
BccI	CCATC	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	3 cut(s)	723, 771, 863
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	542
BfuAI	ACCTGC	2 cut(s)	112, 223
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	5 cut(s)	10, 13, 112, 542, 767
BlsI	GCNGC	5 cut(s)	11, 14, 113, 543, 768
Bme1390I	CCNGG	3 cut(s)	723, 771, 863
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	552, 676, 690
BmrFI	CCNGG	3 cut(s)	723, 771, 863
BmsI	GCATC	3 cut(s)	10, 179, 190
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	3 cut(s)	158, 201, 705
Bpu10I	CCTNAGC	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	715
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	641, 722, 770, 876
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 637, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 800, 801
Bse1I	ACTGG	2 cut(s)	35, 272
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	715
BseBI	CCWGG	3 cut(s)	723, 771, 863
BseDI	CCNNGG	4 cut(s)	641, 722, 770, 876
BseGI	GGATG	4 cut(s)	25, 233, 286, 868
BseJI	GATNNNNATC	1 cut(s)	715
BseLI	CCNNNNNNNGG	3 cut(s)	224, 800, 801
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	281, 675, 810
BseNI	ACTGG	2 cut(s)	35, 272
BseRI	GAGGAG	2 cut(s)	155, 681
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	528, 753
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	3 cut(s)	135, 140, 417
BshFI	GGCC	1 cut(s)	840
BsiHKAI	GWGCWC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	3 cut(s)	224, 800, 801
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	840
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	5 cut(s)	93, 674, 710, 790, 865
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	5 cut(s)	111, 114, 404, 480, 859
BspANI	GGCC	1 cut(s)	840
BspCNI	CTCAG	3 cut(s)	280, 676, 809
BspLI	GGNNCC	3 cut(s)	552, 676, 690
BspMAI	CTGCAG	1 cut(s)	546
BspMI	ACCTGC	2 cut(s)	112, 223
BspPI	GGATC	5 cut(s)	669, 682, 718, 785, 873
BsrBI	CCGCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	35, 272
BssECI	CCNNGG	4 cut(s)	641, 722, 770, 876
BssMI	GATC	5 cut(s)	93, 674, 710, 790, 865
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	641, 876
Bst2UI	CCWGG	3 cut(s)	723, 771, 863
BstACI	GRCGYC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	764
BstDEI	CTNAG	5 cut(s)	267, 387, 634, 684, 796
BstDSI	CCRYGG	1 cut(s)	641
BstF5I	GGATG	4 cut(s)	25, 233, 286, 868
BstKTI	GATC	5 cut(s)	96, 677, 713, 793, 868
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	5 cut(s)	93, 674, 710, 790, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 550, 772
BstNI	CCWGG	3 cut(s)	723, 771, 863
BstSCI	CCNGG	3 cut(s)	721, 769, 861
BstSFI	CTRYAG	1 cut(s)	542
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	528, 753
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	3 cut(s)	674, 710, 790
BstYI	RGATCY	3 cut(s)	674, 710, 790
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	840
BtgI	CCRYGG	1 cut(s)	641
BtsCI	GGATG	4 cut(s)	25, 233, 286, 868
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	2 cut(s)	112, 223
Cac8I	GCNNGC	1 cut(s)	764
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	2 cut(s)	224, 642
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	5 cut(s)	267, 387, 634, 684, 796
DpnI	GATC	5 cut(s)	95, 676, 712, 792, 867
DpnII	GATC	5 cut(s)	93, 674, 710, 790, 865
EciI	GGCGGA	1 cut(s)	848
Eco130I	CCWWGG	2 cut(s)	641, 876
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	721, 769, 861
EcoT14I	CCWWGG	2 cut(s)	641, 876
ErhI	CCWWGG	2 cut(s)	641, 876
FaeI	CATG	2 cut(s)	227, 645
FatI	CATG	2 cut(s)	223, 641
Fnu4HI	GCNGC	5 cut(s)	10, 13, 112, 542, 767
FokI	GGATG	4 cut(s)	32, 240, 293, 855
Fsp4HI	GCNGC	5 cut(s)	10, 13, 112, 542, 767
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	5 cut(s)	10, 13, 112, 542, 767
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	3 cut(s)	158, 201, 705
HaeIII	GGCC	1 cut(s)	840
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	227, 645
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	4 cut(s)	4, 50, 128, 754
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	620, 755
Hpy166II	GTNNAC	2 cut(s)	147, 348
Hpy188I	TCNGA	4 cut(s)	291, 612, 685, 706
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	147, 348
Hpy99I	CGWCG	2 cut(s)	107, 136
HpyAV	CCTTC	2 cut(s)	401, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 550, 772
HpyF3I	CTNAG	5 cut(s)	267, 387, 634, 684, 796
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	227, 645
Kzo9I	GATC	5 cut(s)	93, 674, 710, 790, 865
LmnI	GCTCC	3 cut(s)	401, 550, 694
Lsp1109I	GCAGC	2 cut(s)	528, 753
LweI	GCATC	3 cut(s)	10, 179, 190
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	533, 668
MalI	GATC	5 cut(s)	95, 676, 712, 792, 867
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	5 cut(s)	93, 674, 710, 790, 865
MboII	GAAGA	1 cut(s)	484
MflI	RGATCY	3 cut(s)	674, 710, 790
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	5 cut(s)	195, 317, 363, 417, 501
MlyI	GAGTC	2 cut(s)	59, 137
MseI	TTAA	1 cut(s)	596
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	3 cut(s)	723, 771, 863
MvaI	CCWGG	3 cut(s)	723, 771, 863
MwoI	GCNNNNNNNGC	3 cut(s)	229, 550, 772
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	5 cut(s)	93, 674, 710, 790, 865
NlaIII	CATG	2 cut(s)	227, 645
NlaIV	GGNNCC	3 cut(s)	552, 676, 690
NmuCI	GTSAC	2 cut(s)	533, 668
PaeR7I	CTCGAG	1 cut(s)	35
PaqCI	CACCTGC	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 102
PfeI	GAWTC	2 cut(s)	4, 754
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	11, 14, 113, 543, 768
PleI	GAGTC	2 cut(s)	58, 136
PpsI	GAGTC	2 cut(s)	58, 136
Psp6I	CCWGG	3 cut(s)	721, 769, 861
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	721, 769, 861
PspN4I	GGNNCC	3 cut(s)	552, 676, 690
PspPI	GGNCC	1 cut(s)	413
PspXI	VCTCGAGB	1 cut(s)	35
PsrI	GAACNNNNNNTAC	2 cut(s)	815, 847
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	3 cut(s)	674, 710, 790
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	5 cut(s)	10, 13, 112, 542, 767
Sau3AI	GATC	5 cut(s)	93, 674, 710, 790, 865
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	2 cut(s)	59, 137
ScrFI	CCNGG	3 cut(s)	723, 771, 863
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	3 cut(s)	10, 179, 190
SfcI	CTRYAG	1 cut(s)	542
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	195, 317, 363, 417, 501
SsiI	CCGC	5 cut(s)	111, 114, 404, 480, 859
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	3 cut(s)	721, 769, 861
StyI	CCWWGG	2 cut(s)	641, 876
TaqI	TCGA	4 cut(s)	27, 36, 71, 96
TasI	AATT	5 cut(s)	195, 317, 363, 417, 501
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	4, 754
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	533, 668
TseI	GCWGC	4 cut(s)	9, 12, 541, 766
Tsp45I	GTSAC	2 cut(s)	533, 668
TspDTI	ATGAA	1 cut(s)	822
TspGWI	ACGGA	2 cut(s)	687, 723
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XhoI	CTCGAG	1 cut(s)	35
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.