Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Reverse (-)

59697291 .. 59700360

Gene Structure 3070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0440000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAAGCGGGAACGAGAACCCTTCTCCTCAGTCCCACTCCAATTCAACGGAGCCCAAAACGCCCGCTCCGACGTCGTTTTGGCCCCACTTTCCCGCGCTTCAATATTAGGGCTCAGAATTCCGGTAGTGATTACAGAGGCCCGAAGCCGAAGACGAATTTGGTCGCCGATTGGGTCTCTAACAACGACGACGCCGCTCGGAGCTTGCCGATTTACGCCGGCGGCGTCTCCCTCTTGGCCGTTCTCTTCAACCGCACCGTTTCCGACATCGCTCTCGTTGCTGACGCCAGCAGTTCACAGTCTAGAGCTGATTTGTTGACATTGGGATTGGCTGTGACCAACATACTAGCAGGTCTGGTATGGCTGTCAATCAGACCAAAATCTATATCAAAGGTGAATCCCAAAGGGGTCGAATGCCGGAGGATGCATTCTGATCTCCCCACAACTCTAGTTTCCGAGTTATTGTGGGCATGGGAATCTCTGTCAAATGCGACATGTTGCAGGTCTCTTGTTATAGTTTATGGTGGCAGAAATATACTTCAGATTGGTTTTGCAGCTGCGTCTTCCAATGGTGATGGCGAAGCTGTGGCTGTGGATGCTGATAAACTGATTCAAGGATCCCTCTATCGAGGTGTTATGAAATCAGGAGTTCAGAGCTATTTGGCCAACCTAGCTCTCTATCCTGGCAGTAATATTGCAGCCACTTGGAGACAAAGGAATTGCAATAATTGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

245

Amino Acids

26.63

Weight (kDa)

10.02

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB2_CCB4	PF11152	69 - 231	5.8e-36	Cofactor assembly of complex C subunit B, CCB2/CCB4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	76
Acc36I	ACCTGC	2 cut(s)	341, 492
AccBSI	CCGCTC	2 cut(s)	67, 197
AccII	CGCG	1 cut(s)	97
AciI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
AclWI	GGATC	2 cut(s)	612, 625
AcoI	YGGCCR	2 cut(s)	237, 663
AcsI	RAATTY	2 cut(s)	118, 157
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	4 cut(s)	73, 192, 225, 285
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	4 cut(s)	47, 103, 250, 614
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	6 cut(s)	204, 308, 557, 584, 657, 674
AluI	AGCT	6 cut(s)	204, 308, 557, 584, 657, 674
Alw26I	GTCTC	4 cut(s)	181, 232, 510, 703
AlwI	GGATC	2 cut(s)	612, 625
AoxI	GGCC	4 cut(s)	82, 139, 237, 663
ApeKI	GCWGC	3 cut(s)	554, 557, 698
ApoI	RAATTY	2 cut(s)	118, 157
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	83, 140
AsuHPI	GGTGA	2 cut(s)	406, 584
BalI	TGGCCA	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	56, 115
BbsI	GAAGAC	2 cut(s)	158, 555
BbvI	GCAGC	3 cut(s)	544, 566, 710
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	684
BcoDI	GTCTC	4 cut(s)	181, 232, 510, 703
BfaI	CTAG	4 cut(s)	303, 347, 449, 671
BfuAI	ACCTGC	2 cut(s)	341, 492
BisI	GCNGC	5 cut(s)	195, 223, 555, 558, 699
BlsI	GCNGC	5 cut(s)	196, 224, 556, 559, 700
Bme1390I	CCNGG	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	83, 140
BmiI	GGNNCC	3 cut(s)	53, 85, 619
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	414, 586
BpiI	GAAGAC	2 cut(s)	158, 555
BsaHI	GRCGYC	4 cut(s)	73, 192, 225, 285
BsaI	GGTCTC	2 cut(s)	181, 510
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse118I	RCCGGY	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	684
BseGI	GGATG	2 cut(s)	429, 601
BseMII	CTCAG	2 cut(s)	43, 128
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	3 cut(s)	544, 566, 710
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	4 cut(s)	84, 141, 239, 665
BsiSI	CCGG	3 cut(s)	123, 219, 418
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	4 cut(s)	181, 232, 510, 703
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	2 cut(s)	419, 427
BsnI	GGCC	4 cut(s)	84, 141, 239, 665
Bso31I	GGTCTC	2 cut(s)	181, 510
Bsp1286I	GDGCHC	2 cut(s)	56, 115
Bsp143I	GATC	2 cut(s)	433, 617
BspACI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
BspANI	GGCC	4 cut(s)	84, 141, 239, 665
BspCNI	CTCAG	2 cut(s)	42, 127
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	53, 85, 619
BspMI	ACCTGC	2 cut(s)	341, 492
BspPI	GGATC	2 cut(s)	612, 625
BspTNI	GGTCTC	2 cut(s)	181, 510
BsrBI	CCGCTC	2 cut(s)	67, 197
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssMI	GATC	2 cut(s)	433, 617
BssNI	GRCGYC	4 cut(s)	73, 192, 225, 285
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	259, 300
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	4 cut(s)	73, 192, 225, 285
BstC8I	GCNNGC	4 cut(s)	65, 206, 220, 289
BstDEI	CTNAG	2 cut(s)	29, 114
BstF5I	GGATG	2 cut(s)	429, 601
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	436, 620
BstMAI	GTCTC	4 cut(s)	181, 232, 510, 703
BstMBI	GATC	2 cut(s)	433, 617
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 278, 596, 671
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	544, 566, 710
BstV2I	GAAGAC	2 cut(s)	158, 555
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BsuRI	GGCC	4 cut(s)	84, 141, 239, 665
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	429, 601
BveI	ACCTGC	2 cut(s)	341, 492
Cac8I	GCNNGC	4 cut(s)	65, 206, 220, 289
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	83, 140
CseI	GACGC	4 cut(s)	200, 214, 293, 549
CviAII	CATG	2 cut(s)	471, 495
DdeI	CTNAG	2 cut(s)	29, 114
DpnI	GATC	2 cut(s)	435, 619
DpnII	GATC	2 cut(s)	433, 617
EaeI	YGGCCR	2 cut(s)	237, 663
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco24I	GRGCYC	2 cut(s)	56, 115
Eco31I	GGTCTC	2 cut(s)	181, 510
Eco57I	CTGAAG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	682
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	56, 115
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	474, 498
FaiI	YATR	9 cut(s)	344, 361, 386, 472, 496, 515, 522, 536, 638
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	470, 494
FauI	CCCGC	2 cut(s)	72, 102
Fnu4HI	GCNGC	5 cut(s)	195, 223, 555, 558, 699
FokI	GGATG	2 cut(s)	436, 608
FriOI	GRGCYC	2 cut(s)	56, 115
Fsp4HI	GCNGC	5 cut(s)	195, 223, 555, 558, 699
FspBI	CTAG	4 cut(s)	303, 347, 449, 671
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	5 cut(s)	195, 223, 555, 558, 699
HaeIII	GGCC	4 cut(s)	84, 141, 239, 665
HapII	CCGG	3 cut(s)	123, 219, 418
HgaI	GACGC	4 cut(s)	200, 214, 293, 549
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	4 cut(s)	73, 192, 225, 285
Hin1II	CATG	2 cut(s)	474, 498
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	397, 476, 610
HpaII	CCGG	3 cut(s)	123, 219, 418
HphI	GGTGA	2 cut(s)	406, 584
Hpy166II	GTNNAC	2 cut(s)	296, 318
Hpy188I	TCNGA	9 cut(s)	71, 117, 201, 265, 374, 433, 457, 543, 654
Hpy188III	TCNNGA	2 cut(s)	303, 645
Hpy8I	GTNNAC	2 cut(s)	296, 318
Hpy99I	CGWCG	4 cut(s)	75, 78, 191, 194
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	259, 300
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	5 cut(s)	427, 501, 554, 698, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 278, 596, 671
HpyF3I	CTNAG	2 cut(s)	29, 114
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	4 cut(s)	73, 192, 225, 285
Hsp92II	CATG	2 cut(s)	474, 498
HspAI	GCGC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	433, 617
LmnI	GCTCC	3 cut(s)	51, 72, 201
Lsp1109I	GCAGC	3 cut(s)	544, 566, 710
LweI	GCATC	2 cut(s)	414, 586
MaeI	CTAG	4 cut(s)	303, 347, 449, 671
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	435, 619
MbiI	CCGCTC	2 cut(s)	67, 197
MboI	GATC	2 cut(s)	433, 617
MboII	GAAGA	3 cut(s)	163, 238, 555
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	56, 115
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	5 cut(s)	42, 118, 157, 718, 727
MluNI	TGGCCA	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	94, 288
MnlI	CCTC	6 cut(s)	38, 131, 242, 414, 623, 632
Mox20I	TGGCCA	1 cut(s)	665
Mph1103I	ATGCAT	1 cut(s)	429
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	665
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	123, 219, 418
MspR9I	CCNGG	1 cut(s)	684
Mva1269I	GAATGC	2 cut(s)	419, 427
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	60, 278, 596, 671
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	2 cut(s)	433, 617
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	474, 498
NlaIV	GGNNCC	3 cut(s)	53, 85, 619
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	1 cut(s)	498
PciI	ACATGT	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	2 cut(s)	67, 222
PctI	GAATGC	2 cut(s)	419, 427
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	397, 476, 610
PkrI	GCNGC	5 cut(s)	196, 224, 556, 559, 700
PscI	ACATGT	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	53, 85, 619
PspPI	GGNCC	2 cut(s)	83, 140
PsuI	RGATCY	1 cut(s)	617
PvuII	CAGCTG	1 cut(s)	557
SatI	GCNGC	5 cut(s)	195, 223, 555, 558, 699
Sau3AI	GATC	2 cut(s)	433, 617
Sau96I	GGNCC	2 cut(s)	83, 140
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	2 cut(s)	56, 115
SfaNI	GCATC	2 cut(s)	414, 586
SgrAI	CRCCGGYG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	42, 118, 157, 718, 727
SsiI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
SspI	AATATT	2 cut(s)	106, 694
SspMI	CTAG	4 cut(s)	303, 347, 449, 671
StyD4I	CCNGG	1 cut(s)	682
TaaI	ACNGT	2 cut(s)	259, 300
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	411, 628
TasI	AATT	5 cut(s)	42, 118, 157, 718, 727
TauI	GCSGC	2 cut(s)	197, 225
TfiI	GAWTC	3 cut(s)	397, 476, 610
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	554, 557, 698
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	653
TspGWI	ACGGA	1 cut(s)	64
XapI	RAATTY	2 cut(s)	118, 157
XbaI	TCTAGA	1 cut(s)	302
XceI	RCATGY	1 cut(s)	498
XspI	CTAG	4 cut(s)	303, 347, 449, 671
ZraI	GACGTC	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.