Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Reverse (-)

2413027 .. 2415887

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G050500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGATAGTTCCGGTTACAAGGAGTACGTGGCAGGCTTGCTCGCCGGCGTTGCCACTGTCGCCATTGGCCATCCCTTTGACACCATCAAGGTGAAGATGCAAAAACACAACACTGTAGCACATGGGATTACGTACAGGAATAGTTTTCATTGTACTGCGAGGATACTAAAGACTGAAGGGATTAAAGGACTTTACAGAGGTGCAACATCATCTTTTGTGGGGATGGCTTTCGAGAGTTCACTTCTTTTTGGCATGTATTCGCAAATGAAACAGTCACTGCAGGGAAGCGCACAAGGTGCAGGGCCACAGCTCCAAGTCATAATTCCATCTGCAGCTTATAGTGGAGCAATCATCAGTTTTATATTATGCCCGTCAGAGCTGGTGAAGTGTAGGATGCAAGTTCAAGGCACAGACTCTTTGGTCCCAATGTCCAGAAGATACGACAGTTCTCTTGATTGTGCACTTAAAACTGTAAAAAATGATGGGGTTAGAGGAATTTTTCGAGGAGGTTTTACAACATTGTTAAGAGAATCTATTGGAAATGCAGTCTTCTTTAGCATTTACGAGCATGTCCGCTATCACATGCATTTACATCTGAAATCTGCTTCACCTGACCACAGAAACTTGATTGACGTGGGAGTTGGGATTGCTAGTGGTGGCCTTGGTGGTATAGCGTTTTGGTCTGCTGTTCTACCCTTGGATGTGGCAAAAACCATAATTCAGACTGCTCCAGATAATAGTTCTTCAAGAAACCCATTTCAAGTCTTGAGCTCGATTTACAGAAGGGCTGGATTGAAAGGATGCTATGTTGGCTTGGGTCCTACTATTGTTCGGGCTTTTCCTGCTAATGCAACGGCAATTGTCGCCTGGGAGGTAGCCGTAAAGCTATTAGGCATCAAACGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

32.56

Weight (kDa)

9.64

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AciI	CCGC	2 cut(s)	5, 577
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	29, 137, 157
AgsI	TTSAA	4 cut(s)	407, 750, 764, 799
AjiI	CACGTC	1 cut(s)	637
AjnI	CCWGG	1 cut(s)	869
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	5 cut(s)	313, 338, 382, 774, 889
AluI	AGCT	5 cut(s)	313, 338, 382, 774, 889
Alw21I	GWGCWC	2 cut(s)	466, 776
Alw44I	GTGCAC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	3 cut(s)	70, 305, 661
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	305, 424, 821
AsuHPI	GGTGA	3 cut(s)	106, 397, 603
AvaII	GGWCC	2 cut(s)	424, 821
BaeGI	GKGCMC	1 cut(s)	466
BaeI	ACNNNNGTAYC	2 cut(s)	433, 466
BalI	TGGCCA	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	2 cut(s)	466, 776
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	5 cut(s)	81, 95, 220, 337, 479
BceAI	ACGGC	2 cut(s)	866, 873
BciT130I	CCWGG	1 cut(s)	871
BciVI	GTATCC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	3 cut(s)	117, 281, 333
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	871
Bme18I	GGWCC	2 cut(s)	424, 821
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	305, 424, 821
BmiI	GGNNCC	2 cut(s)	426, 822
BmrFI	CCNGG	1 cut(s)	871
BmsI	GCATC	4 cut(s)	90, 387, 794, 906
BpiI	GAAGAC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	790
BsaAI	YACGTR	2 cut(s)	31, 135
BsaJI	CCNNGG	3 cut(s)	664, 699, 870
BsaWI	WCCGGW	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	3 cut(s)	664, 699, 870
BseGI	GGATG	5 cut(s)	73, 231, 402, 709, 809
BseRI	GAGGAG	1 cut(s)	522
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	72, 307, 663
BsiHKAI	GWGCWC	2 cut(s)	466, 776
BsiSI	CCGG	2 cut(s)	15, 48
BslFI	GGGAC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	72, 307, 663
Bsp1286I	GDGCHC	2 cut(s)	466, 776
BspACI	CCGC	2 cut(s)	5, 577
BspANI	GGCC	3 cut(s)	72, 307, 663
BspLI	GGNNCC	2 cut(s)	426, 822
BspMAI	CTGCAG	2 cut(s)	285, 337
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	664, 699, 870
BssT1I	CCWWGG	2 cut(s)	664, 699
Bst2UI	CCWGG	1 cut(s)	871
Bst4CI	ACNGT	5 cut(s)	61, 118, 276, 449, 475
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBAI	YACGTR	2 cut(s)	31, 135
BstC8I	GCNNGC	4 cut(s)	37, 41, 45, 49
BstF5I	GGATG	5 cut(s)	73, 231, 402, 709, 809
BstHHI	GCGC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 62, 299, 813, 845, 866
BstNI	CCWGG	1 cut(s)	871
BstNSI	RCATGY	3 cut(s)	259, 575, 589
BstSCI	CCNGG	1 cut(s)	869
BstSFI	CTRYAG	3 cut(s)	117, 281, 333
BstSLI	GKGCMC	1 cut(s)	466
BstSNI	TACGTA	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	72, 307, 663
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	5 cut(s)	73, 231, 402, 709, 809
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	57, 114, 278
Cac8I	GCNNGC	4 cut(s)	37, 41, 45, 49
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	305, 424, 821
Csp6I	GTAC	3 cut(s)	28, 136, 156
CviAII	CATG	4 cut(s)	125, 256, 572, 586
CviQI	GTAC	3 cut(s)	28, 136, 156
DraIII	CACNNNGTG	1 cut(s)	299
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	774
Eco105I	TACGTA	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	664, 699
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	2 cut(s)	424, 821
Eco53kI	GAGCTC	1 cut(s)	774
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	869
EcoT14I	CCWWGG	2 cut(s)	664, 699
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	2 cut(s)	664, 699
FaeI	CATG	4 cut(s)	128, 259, 575, 589
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	124, 255, 571, 585
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	5 cut(s)	60, 238, 409, 716, 816
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	3 cut(s)	72, 307, 663
HapII	CCGG	2 cut(s)	15, 48
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	128, 259, 575, 589
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	416, 533
HpaII	CCGG	2 cut(s)	15, 48
HphI	GGTGA	3 cut(s)	106, 397, 603
Hpy166II	GTNNAC	2 cut(s)	242, 464
Hpy188I	TCNGA	3 cut(s)	379, 600, 726
Hpy188III	TCNNGA	6 cut(s)	235, 435, 455, 734, 750, 769
Hpy8I	GTNNAC	2 cut(s)	242, 464
HpyAV	CCTTC	2 cut(s)	173, 780
HpyCH4III	ACNGT	5 cut(s)	61, 118, 276, 449, 475
HpyCH4IV	ACGT	4 cut(s)	30, 134, 636, 904
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 62, 299, 813, 845, 866
HpySE526I	ACGT	4 cut(s)	30, 134, 636, 904
Hsp92II	CATG	4 cut(s)	128, 259, 575, 589
HspAI	GCGC	1 cut(s)	291
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	318, 347, 736
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	4 cut(s)	90, 387, 794, 906
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	4 cut(s)	30, 134, 636, 904
MaeIII	GTNAC	3 cut(s)	17, 276, 905
MboII	GAAGA	4 cut(s)	109, 450, 544, 738
MfeI	CAATTG	1 cut(s)	861
MhlI	GDGCHC	2 cut(s)	466, 776
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	4 cut(s)	324, 498, 720, 861
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	6 cut(s)	156, 194, 488, 500, 503, 868
Mox20I	TGGCCA	1 cut(s)	72
Mph1103I	ATGCAT	1 cut(s)	591
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	3 cut(s)	186, 468, 527
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	2 cut(s)	15, 48
MspR9I	CCNGG	1 cut(s)	871
MunI	CAATTG	1 cut(s)	861
MvaI	CCWGG	1 cut(s)	871
MwoI	GCNNNNNNNGC	6 cut(s)	53, 62, 299, 813, 845, 866
NaeI	GCCGGC	1 cut(s)	49
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	128, 259, 575, 589
NlaIV	GGNNCC	2 cut(s)	426, 822
NmuCI	GTSAC	2 cut(s)	276, 905
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	3 cut(s)	259, 575, 589
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	2 cut(s)	31, 135
PpuMI	RGGWCCY	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	2 cut(s)	426, 822
PspPI	GGNCC	3 cut(s)	305, 424, 821
PspPPI	RGGWCCY	1 cut(s)	821
PstI	CTGCAG	2 cut(s)	285, 337
PstNI	CAGNNNCTG	1 cut(s)	280
RsaI	GTAC	3 cut(s)	29, 137, 157
RsaNI	GTAC	3 cut(s)	28, 136, 156
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	776
SaqAI	TTAA	3 cut(s)	186, 468, 527
SatI	GCNGC	1 cut(s)	336
Sau96I	GGNCC	3 cut(s)	305, 424, 821
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	871
SduI	GDGCHC	2 cut(s)	466, 776
SfaNI	GCATC	4 cut(s)	90, 387, 794, 906
SfcI	CTRYAG	3 cut(s)	117, 281, 333
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	424, 821
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SnaBI	TACGTA	1 cut(s)	135
Sse9I	AATT	4 cut(s)	324, 498, 720, 861
SsiI	CCGC	2 cut(s)	5, 577
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	869
StyI	CCWWGG	2 cut(s)	664, 699
TaaI	ACNGT	5 cut(s)	61, 118, 276, 449, 475
TaiI	ACGT	4 cut(s)	33, 137, 639, 907
TaqI	TCGA	3 cut(s)	234, 505, 776
TasI	AATT	4 cut(s)	324, 498, 720, 861
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	3 cut(s)	186, 468, 527
Tru9I	TTAA	3 cut(s)	186, 468, 527
TscAI	CASTG	3 cut(s)	64, 121, 285
TseFI	GTSAC	2 cut(s)	276, 905
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	2 cut(s)	276, 905
TspDTI	ATGAA	2 cut(s)	140, 284
TspRI	CASTG	3 cut(s)	64, 121, 285
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	424, 821
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	3 cut(s)	259, 575, 589
XspI	CTAG	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.