Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037535.1

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Forward (+)

596 .. 1911

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037535.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgagggatagctccggctacaaggaatacgtggccggcttgctcgccggcgttgccactgttggcaccggccatcccttcgacaccgtcaaggtgaagatgcaaatgcacaacactgtagaacatgggattacataccggaacggtttgcattgtactgtaaggatactaaggactgaagggattaaaggactttacagaggggcaacttcatcttttatgggggtagcttttgagagttcacttctttttggcatgtattcccagatgaaacagtcgctgcagggaaatgtgcaaagtgctgtgccacaaccacaaatcataattccatctgcagcttttggtggagcaatgatcagttttatactatgcccctcagagctgttgaagtgtaggatgcaagttcaaggcacagactctttggtaccgatatcaagtagatatgctggccctcttgattgcgccctcaaaactgtaaaagaggatggggtaagaacatactgcaccttgttttacaaacataatttgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

177

Amino Acids

19.38

Weight (kDa)

9.15

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	65, 424
AcoI	YGGCCR	2 cut(s)	33, 70
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	157, 426
AgsI	TTSAA	2 cut(s)	388, 407
AluBI	AGCT	4 cut(s)	12, 230, 338, 382
AluI	AGCT	4 cut(s)	12, 230, 338, 382
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	3 cut(s)	33, 70, 448
ApeKI	GCWGC	2 cut(s)	280, 335
Asp718I	GGTACC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	65, 424
BbvI	GCAGC	2 cut(s)	267, 347
BccI	CCATC	3 cut(s)	81, 337, 479
BciVI	GTATCC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	354
BfmI	CTRYAG	3 cut(s)	117, 281, 333
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	281, 336
BlsI	GCNGC	2 cut(s)	282, 337
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	67, 426
BmsI	GCATC	2 cut(s)	90, 387
BsaAI	YACGTR	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	138
Bse118I	RCCGGY	3 cut(s)	35, 47, 68
Bse3DI	GCAATG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	73, 402, 490
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	267, 347
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	3 cut(s)	35, 72, 450
BshNI	GGYRCC	2 cut(s)	65, 424
BsiSI	CCGG	5 cut(s)	15, 36, 48, 69, 139
BsnI	GGCC	3 cut(s)	35, 72, 450
Bsp143I	GATC	1 cut(s)	354
BspANI	GGCC	3 cut(s)	35, 72, 450
BspCNI	CTCAG	1 cut(s)	389
BspLI	GGNNCC	2 cut(s)	67, 426
BspMAI	CTGCAG	2 cut(s)	285, 337
BspT107I	GGYRCC	2 cut(s)	65, 424
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	3 cut(s)	35, 47, 68
BssAI	RCCGGY	3 cut(s)	35, 47, 68
BssMI	GATC	1 cut(s)	354
Bst4CI	ACNGT	7 cut(s)	61, 88, 118, 146, 160, 276, 475
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	5 cut(s)	37, 41, 45, 49, 448
BstDEI	CTNAG	2 cut(s)	170, 376
BstF5I	GGATG	3 cut(s)	73, 402, 490
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	259
BstSFI	CTRYAG	3 cut(s)	117, 281, 333
BstV1I	GCAGC	2 cut(s)	267, 347
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	35, 72, 450
BtsCI	GGATG	3 cut(s)	73, 402, 490
BtsIMutI	CAGTG	2 cut(s)	57, 114
Cac8I	GCNNGC	5 cut(s)	37, 41, 45, 49, 448
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	3 cut(s)	35, 47, 68
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	156, 425
CviAII	CATG	2 cut(s)	125, 256
CviJI	RGCY	9 cut(s)	12, 18, 35, 39, 72, 230, 338, 382, 450
CviKI_1	RGCY	9 cut(s)	12, 18, 35, 39, 72, 230, 338, 382, 450
CviQI	GTAC	2 cut(s)	156, 425
DdeI	CTNAG	2 cut(s)	170, 376
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	33, 70
Eco32I	GATATC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	432
FaeI	CATG	2 cut(s)	128, 259
FatI	CATG	2 cut(s)	124, 255
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	281, 336
FokI	GGATG	3 cut(s)	60, 409, 497
Fsp4HI	GCNGC	2 cut(s)	281, 336
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	2 cut(s)	281, 336
HaeIII	GGCC	3 cut(s)	35, 72, 450
HapII	CCGG	5 cut(s)	15, 36, 48, 69, 139
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	128, 259
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	5 cut(s)	15, 36, 48, 69, 139
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	88, 173
HpyCH4III	ACNGT	7 cut(s)	61, 88, 118, 146, 160, 276, 475
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	8 cut(s)	103, 109, 151, 283, 295, 335, 400, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	170, 376
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	128, 259
HspAI	GCGC	1 cut(s)	462
KpnI	GGTACC	1 cut(s)	428
KroI	GCCGGC	2 cut(s)	35, 47
KroNI	GCCGGC	2 cut(s)	37, 49
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	17, 347
LpnPI	CCDG	8 cut(s)	28, 49, 61, 82, 152, 269, 278, 432
Lsp1109I	GCAGC	2 cut(s)	267, 347
LweI	GCATC	2 cut(s)	90, 387
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	2 cut(s)	324, 523
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	5 cut(s)	194, 385, 462, 475, 476
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	35, 47
MseI	TTAA	1 cut(s)	186
MspI	CCGG	5 cut(s)	15, 36, 48, 69, 139
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	2 cut(s)	37, 49
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	2 cut(s)	35, 47
NlaIII	CATG	2 cut(s)	128, 259
NlaIV	GGNNCC	2 cut(s)	67, 426
NspI	RCATGY	1 cut(s)	259
PdiI	GCCGGC	2 cut(s)	37, 49
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	282, 337
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	67, 426
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	2 cut(s)	285, 337
PstNI	CAGNNNCTG	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	157, 426
RsaNI	GTAC	2 cut(s)	156, 425
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	281, 336
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	410
SetI	ASST	7 cut(s)	14, 33, 96, 232, 340, 384, 509
SfaNI	GCATC	2 cut(s)	90, 387
SfcI	CTRYAG	3 cut(s)	117, 281, 333
SgrAI	CRCCGGYG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	324, 523
TaaI	ACNGT	7 cut(s)	61, 88, 118, 146, 160, 276, 475
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	324, 523
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	64, 121
TseI	GCWGC	2 cut(s)	280, 335
TspDTI	ATGAA	2 cut(s)	201, 284
TspRI	CASTG	2 cut(s)	64, 121
Tth111I	GACNNNGTC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.